mRNA_F-serratus_M_contig1051.552.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1051.552.1
Unique NamemRNA_F-serratus_M_contig1051.552.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig1051.552.1 vs. uniprot
Match: A0A7N0R894_KALFE (Mitogen-activated protein kinase n=2 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0R894_KALFE)

HSP 1 Score: 52.0 bits (123), Expect = 5.930e-5
Identity = 27/76 (35.53%), Postives = 44/76 (57.89%), Query Frame = 1 
Query:   13 PGINSDAASLMTNLLLFDPDKRCTASEALLHSFFEDFRNDDPLKGDTPTGLHFEFEHRSVSTTTLRDLIAKEVDYF 240
            P +++ A  L+  +L+FDP+KR TA EAL H +   F +D  ++   P    F+FE  S++   +++LI KE   F
Sbjct:  297 PSMSAQAIDLLEKMLVFDPEKRVTAEEALSHPYLAPF-HDLSVEPVCPRAFVFDFEQSSLTEEDIKELIWKESILF 371
[Close]
BLAST of mRNA_F-serratus_M_contig1051.552.1 vs. uniprot
Match: A0A6I9SKB3_ELAGV (Mitogen-activated protein kinase n=6 Tax=commelinids TaxID=4734 RepID=A0A6I9SKB3_ELAGV)

HSP 1 Score: 52.0 bits (123), Expect = 6.080e-5
Identity = 26/78 (33.33%), Postives = 43/78 (55.13%), Query Frame = 1 
Query:   13 PGINSDAASLMTNLLLFDPDKRCTASEALLHSFFEDFR--NDDPLKGDTPTGLHFEFEHRSVSTTTLRDLIAKEVDYF 240
            P ++S A  L+  +L+FDP KR T +EAL H +   +   ND+P+    P    F+FE  S +   +++L+ +E   F
Sbjct:  332 PNVSSGAVDLLEKMLVFDPSKRITVTEALCHPYLASYHDINDEPV---CPAPFSFDFEQPSFTEEDVKELVWRETLKF 406
[Close]
BLAST of mRNA_F-serratus_M_contig1051.552.1 vs. uniprot
Match: A0A0L8RMQ4_SACEU (Mitogen-activated protein kinase n=1 Tax=Saccharomyces eubayanus TaxID=1080349 RepID=A0A0L8RMQ4_SACEU)

HSP 1 Score: 52.0 bits (123), Expect = 6.230e-5
Identity = 32/82 (39.02%), Postives = 46/82 (56.10%), Query Frame = 1 
Query:    7 LLPGINSDAASLMTNLLLFDPDKRCTASEALLHSFFEDFRNDDPLKGDTPTG-----LHFEFEHRSVSTTT--LRDLIAKEV 231
            LLP +N+    L+  +L+FDP+KR TA EAL H + + +   DP  GD P G       FEF++   + TT  L+ LI  E+
Sbjct:  375 LLPSVNAQGVDLLQRMLVFDPEKRITAKEALEHPYLQTYH--DP--GDEPEGECIPPSFFEFDNYKEALTTKDLKKLIWNEI 452
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1051.552.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7N0R894_KALFE5.930e-535.53Mitogen-activated protein kinase n=2 Tax=Kalanchoe... [more]
A0A6I9SKB3_ELAGV6.080e-533.33Mitogen-activated protein kinase n=6 Tax=commelini... [more]
A0A0L8RMQ4_SACEU6.230e-539.02Mitogen-activated protein kinase n=1 Tax=Saccharom... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1051contigF-serratus_M_contig1051:279328..280082 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size446
Cds size444
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928885.0810585-CDS-F-serratus_M_contig1051:279327..2796461622928885.0810585-CDS-F-serratus_M_contig1051:279327..279646Fucus serratus maleCDSF-serratus_M_contig1051 279328..279646 -
1690962614.9749632-CDS-F-serratus_M_contig1051:279327..2796461690962614.9749632-CDS-F-serratus_M_contig1051:279327..279646Fucus serratus maleCDSF-serratus_M_contig1051 279328..279646 -
1622928885.0955489-CDS-F-serratus_M_contig1051:279957..2800821622928885.0955489-CDS-F-serratus_M_contig1051:279957..280082Fucus serratus maleCDSF-serratus_M_contig1051 279958..280082 -
1690962614.9937923-CDS-F-serratus_M_contig1051:279957..2800821690962614.9937923-CDS-F-serratus_M_contig1051:279957..280082Fucus serratus maleCDSF-serratus_M_contig1051 279958..280082 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1051.552.1prot_F-serratus_M_contig1051.552.1Fucus serratus malepolypeptideF-serratus_M_contig1051 279328..280082 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1051.552.1

>prot_F-serratus_M_contig1051.552.1 ID=prot_F-serratus_M_contig1051.552.1|Name=mRNA_F-serratus_M_contig1051.552.1|organism=Fucus serratus male|type=polypeptide|length=148bp
MDLLPGINSDAASLMTNLLLFDPDKRCTASEALLHSFFEDFRNDDPLKGD
TPTGLHFEFEHRSVSTTTLRDLIAKEVDYFQSGANLKIHKRREAHAVDSG
RLCVPAVTVATTAAAAAAAATSAAFSTREDAAPANRYYSESPNGLGDS
back to top

mRNA from alignment at F-serratus_M_contig1051:279328..280082-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1051.552.1 ID=mRNA_F-serratus_M_contig1051.552.1|Name=mRNA_F-serratus_M_contig1051.552.1|organism=Fucus serratus male|type=mRNA|length=755bp|location=Sequence derived from alignment at F-serratus_M_contig1051:279328..280082- (Fucus serratus male)
ATGGATCTTCTGCCCGGCATCAACAGCGACGCCGCTTCCCTAATGACCAA
CCTCCTCCTGTTTGATCCGGACAAGCGCTGCACGGCCTCGGAGGCTCTCC
TCCACAGTTTCTTCGAAGATTTCAGGTGGCGTTTTTTTTCCGACCGAGAG
GCCGCGGTGAAGGTGGCTCGAGGCAGGGGGGTGGGGTTGGAGAAATGTTG
TCGAAAGACGTCTTTATAAACGGGGCGCGTTTTGGTTAGCGCTGACGAAA
TCGGGACGCCCCTCATACATTTCGCACATTGGACCGCCGCGCTTCTATGA
GAGATCTCTGCTTTTCACTGGAATAAATTATTCAGATTCGCGCAACACCT
TGGGTACTCGTCCCAGCAAATCTCCCTCCACAACGCCCTCGTGACGGTAG
TTTTTCCTATACCCGTAATGCTCCGCGAAATGTCAGGAATGACGACCCGC
TAAAAGGTGATACCCCGACCGGCCTCCACTTCGAGTTCGAGCACAGGAGC
GTGTCGACGACCACCTTGAGAGATCTTATCGCGAAAGAGGTGGACTACTT
CCAATCGGGCGCTAACCTTAAGATACACAAGCGGCGGGAGGCGCACGCCG
TCGACTCCGGACGCCTTTGTGTTCCGGCCGTTACCGTTGCCACCACCGCC
GCCGCTGCCGCCGCCGCTGCCACCTCGGCGGCGTTTTCGACTCGAGAAGA
CGCGGCGCCTGCCAACCGATACTACAGCGAAAGTCCCAATGGCCTCGGCG
ACAGC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1051:279328..280082-

>mRNA_F-serratus_M_contig1051.552.1 ID=mRNA_F-serratus_M_contig1051.552.1|Name=mRNA_F-serratus_M_contig1051.552.1|organism=Fucus serratus male|type=CDS|length=888bp|location=Sequence derived from alignment at F-serratus_M_contig1051:279328..280082- (Fucus serratus male)
ATGGATCTTCTGCCCGGCATCAACAGCGACGCCGCTTCCCTAATGACCAA
CCTCCTCCTGTTTGATCCGGACAAGCGCTGCACGGCCTCGGAGGCTCTCC
TCCACAGTTTCTTCGAAGATTTCAGATGGATCTTCTGCCCGGCATCAACA
GCGACGCCGCTTCCCTAATGACCAACCTCCTCCTGTTTGATCCGGACAAG
CGCTGCACGGCCTCGGAGGCTCTCCTCCACAGTTTCTTCGAAGATTTCAG
GAATGACGACCCGCTAAAAGGTGATACCCCGACCGGCCTCCACTTCGAGT
TCGAGCACAGGAGCGTGTCGACGACCACCTTGAGAGATCTTATCGCGAAA
GAGGTGGACTACTTCCAATCGGGCGCTAACCTTAAGATACACAAGCGGCG
GGAGGCGCACGCCGTCGACTCCGGACGCCTTTGTGTTCCGGCCGTTACCG
TTGCCACCACCGCCGCCGCTGCCGCCGCCGCTGCCACCTCGGCGGCGTTT
TCGACTCGAGAAGACGCGGCGCCTGCCAACCGATACTACAGCGAAAGTCC
CAATGGCCTCGGCGACAGCGAATGACGACCCGCTAAAAGGTGATACCCCG
ACCGGCCTCCACTTCGAGTTCGAGCACAGGAGCGTGTCGACGACCACCTT
GAGAGATCTTATCGCGAAAGAGGTGGACTACTTCCAATCGGGCGCTAACC
TTAAGATACACAAGCGGCGGGAGGCGCACGCCGTCGACTCCGGACGCCTT
TGTGTTCCGGCCGTTACCGTTGCCACCACCGCCGCCGCTGCCGCCGCCGC
TGCCACCTCGGCGGCGTTTTCGACTCGAGAAGACGCGGCGCCTGCCAACC
GATACTACAGCGAAAGTCCCAATGGCCTCGGCGACAGC
back to top