mRNA_F-serratus_M_contig1051.551.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1051.551.1
Unique NamemRNA_F-serratus_M_contig1051.551.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1051.551.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1051contigF-serratus_M_contig1051:277342..278058 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size559
Cds size558
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928881.9618528-CDS-F-serratus_M_contig1051:277341..2777091622928881.9618528-CDS-F-serratus_M_contig1051:277341..277709Fucus serratus maleCDSF-serratus_M_contig1051 277342..277709 -
1690962613.7028844-CDS-F-serratus_M_contig1051:277341..2777091690962613.7028844-CDS-F-serratus_M_contig1051:277341..277709Fucus serratus maleCDSF-serratus_M_contig1051 277342..277709 -
1622928881.9755888-CDS-F-serratus_M_contig1051:277868..2780581622928881.9755888-CDS-F-serratus_M_contig1051:277868..278058Fucus serratus maleCDSF-serratus_M_contig1051 277869..278058 -
1690962613.7126017-CDS-F-serratus_M_contig1051:277868..2780581690962613.7126017-CDS-F-serratus_M_contig1051:277868..278058Fucus serratus maleCDSF-serratus_M_contig1051 277869..278058 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1051.551.1prot_F-serratus_M_contig1051.551.1Fucus serratus malepolypeptideF-serratus_M_contig1051 277342..278058 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1051.551.1

>prot_F-serratus_M_contig1051.551.1 ID=prot_F-serratus_M_contig1051.551.1|Name=mRNA_F-serratus_M_contig1051.551.1|organism=Fucus serratus male|type=polypeptide|length=186bp
MCSRTCHGKAAAASEAADSLRFRPKEVVASLERVPARESNEGDFGGASWR
TVNVSGDTGRLIPGGHDSIESSRCSPPPVPPPLGHRWARHEQTCYKRPAD
QGHSGCPRDDNGVVVKTIEEDSTPPPPRQRLKEKAPLEITALKFPIRAGP
SAGSDAVERNRALASLINSTEDPGDVTDLVPSTSTT
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mRNA from alignment at F-serratus_M_contig1051:277342..278058-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1051.551.1 ID=mRNA_F-serratus_M_contig1051.551.1|Name=mRNA_F-serratus_M_contig1051.551.1|organism=Fucus serratus male|type=mRNA|length=717bp|location=Sequence derived from alignment at F-serratus_M_contig1051:277342..278058- (Fucus serratus male)
ATGTGCAGCAGAACTTGCCACGGTAAGGCGGCGGCGGCATCGGAAGCGGC
CGACTCTCTGCGTTTCCGTCCCAAAGAGGTGGTCGCATCTCTCGAGAGGG
TACCAGCGCGGGAGAGCAATGAGGGGGATTTCGGCGGGGCGTCTTGGCGA
ACGGTCAATGTTTCCGGCGACACAGGGAGGCTCATCCCAGGTAATGTGTG
GAGGGGCGAGGTGGTCGGTGCGCAATGTGAGGACGGAGTTGGGCTCGGCA
ACTGCATGATCCCGCCGCGCGCATGTTTAGCACCTGTTGACTCCAACACT
GTCACCGGTCTGATGGCGCCCATGACTTGCGCCGGAAATCCATCCGCAGG
TGGTCATGATTCGATAGAGTCCTCCAGATGCAGCCCTCCGCCCGTGCCCC
CACCCCTTGGGCATCGCTGGGCCCGTCACGAACAAACTTGCTACAAGAGG
CCCGCGGATCAAGGGCATTCGGGATGCCCCCGCGATGACAATGGAGTCGT
CGTCAAAACTATCGAAGAGGACTCTACTCCGCCACCCCCGAGACAGAGGC
TCAAGGAAAAAGCACCGCTAGAAATAACGGCACTAAAGTTCCCAATCAGG
GCTGGGCCCTCGGCGGGGTCTGACGCTGTCGAAAGGAACCGCGCGCTTGC
CTCGCTGATAAATTCCACTGAAGATCCGGGTGATGTTACTGATCTTGTTC
CGTCGACATCGACAACG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1051:277342..278058-

>mRNA_F-serratus_M_contig1051.551.1 ID=mRNA_F-serratus_M_contig1051.551.1|Name=mRNA_F-serratus_M_contig1051.551.1|organism=Fucus serratus male|type=CDS|length=1116bp|location=Sequence derived from alignment at F-serratus_M_contig1051:277342..278058- (Fucus serratus male)
ATGTGCAGCAGAACTTGCCACGGTAAGGCGGCGGCGGCATCGGAAGCGGC
CGACTCTCTGCGTTTCCGTCCCAAAGAGGTGGTCGCATCTCTCGAGAGGG
TACCAGCGCGGGAGAGCAATGAGGGGGATTTCGGCGGGGCGTCTTGGCGA
ACGGTCAATGTTTCCGGCGACACAGGGAGGCTCATCCCAGATGTGCAGCA
GAACTTGCCACGGTAAGGCGGCGGCGGCATCGGAAGCGGCCGACTCTCTG
CGTTTCCGTCCCAAAGAGGTGGTCGCATCTCTCGAGAGGGTACCAGCGCG
GGAGAGCAATGAGGGGGATTTCGGCGGGGCGTCTTGGCGAACGGTCAATG
TTTCCGGCGACACAGGGAGGCTCATCCCAGGTGGTCATGATTCGATAGAG
TCCTCCAGATGCAGCCCTCCGCCCGTGCCCCCACCCCTTGGGCATCGCTG
GGCCCGTCACGAACAAACTTGCTACAAGAGGCCCGCGGATCAAGGGCATT
CGGGATGCCCCCGCGATGACAATGGAGTCGTCGTCAAAACTATCGAAGAG
GACTCTACTCCGCCACCCCCGAGACAGAGGCTCAAGGAAAAAGCACCGCT
AGAAATAACGGCACTAAAGTTCCCAATCAGGGCTGGGCCCTCGGCGGGGT
CTGACGCTGTCGAAAGGAACCGCGCGCTTGCCTCGCTGATAAATTCCACT
GAAGATCCGGGTGATGTTACTGATCTTGTTCCGTCGACATCGACAACGGT
GGTCATGATTCGATAGAGTCCTCCAGATGCAGCCCTCCGCCCGTGCCCCC
ACCCCTTGGGCATCGCTGGGCCCGTCACGAACAAACTTGCTACAAGAGGC
CCGCGGATCAAGGGCATTCGGGATGCCCCCGCGATGACAATGGAGTCGTC
GTCAAAACTATCGAAGAGGACTCTACTCCGCCACCCCCGAGACAGAGGCT
CAAGGAAAAAGCACCGCTAGAAATAACGGCACTAAAGTTCCCAATCAGGG
CTGGGCCCTCGGCGGGGTCTGACGCTGTCGAAAGGAACCGCGCGCTTGCC
TCGCTGATAAATTCCACTGAAGATCCGGGTGATGTTACTGATCTTGTTCC
GTCGACATCGACAACG
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