mRNA_F-serratus_M_contig1051.550.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1051.550.1
Unique NamemRNA_F-serratus_M_contig1051.550.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1051.550.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1051contigF-serratus_M_contig1051:276767..277249 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size483
Cds size483
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928882.1159346-CDS-F-serratus_M_contig1051:276766..2772491622928882.1159346-CDS-F-serratus_M_contig1051:276766..277249Fucus serratus maleCDSF-serratus_M_contig1051 276767..277249 +
1690962613.7494578-CDS-F-serratus_M_contig1051:276766..2772491690962613.7494578-CDS-F-serratus_M_contig1051:276766..277249Fucus serratus maleCDSF-serratus_M_contig1051 276767..277249 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1051.550.1prot_F-serratus_M_contig1051.550.1Fucus serratus malepolypeptideF-serratus_M_contig1051 276767..277249 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1051.550.1

>prot_F-serratus_M_contig1051.550.1 ID=prot_F-serratus_M_contig1051.550.1|Name=mRNA_F-serratus_M_contig1051.550.1|organism=Fucus serratus male|type=polypeptide|length=161bp
MVVVGPSSTGGGVTRSTASTSEERPVGRDVAGAPALISFSRDPTSSTFPA
SSPKLQGHADARGLSSLSSLDFASSSRGHIRGFCSDSRRRSQRDSRIREG
SLNTMGVYWPLPPAVDVSSRDASGSASMGVSGRRISLPHKSSSLLASVDV
EVGIEGDRRRE
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mRNA from alignment at F-serratus_M_contig1051:276767..277249+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1051.550.1 ID=mRNA_F-serratus_M_contig1051.550.1|Name=mRNA_F-serratus_M_contig1051.550.1|organism=Fucus serratus male|type=mRNA|length=483bp|location=Sequence derived from alignment at F-serratus_M_contig1051:276767..277249+ (Fucus serratus male)
ATGGTTGTGGTAGGGCCATCGTCGACTGGCGGCGGGGTGACTCGGTCCAC
GGCGAGCACTTCGGAAGAGAGGCCCGTTGGCCGAGATGTTGCCGGCGCCC
CGGCGTTGATCTCGTTCTCCCGCGACCCCACTTCATCAACCTTCCCTGCC
TCTTCCCCCAAGCTCCAGGGCCACGCTGACGCAAGAGGGTTGTCATCGTT
GTCGTCGCTCGATTTCGCCAGCTCGTCGAGGGGGCATATCCGGGGCTTTT
GCTCCGACTCGCGACGTCGCTCACAAAGAGATTCACGAATTCGGGAAGGA
AGCCTTAACACAATGGGTGTATACTGGCCTCTGCCGCCCGCCGTCGATGT
ATCTTCTAGGGACGCCTCCGGCTCCGCGTCGATGGGCGTCAGCGGGAGAA
GGATATCGTTGCCGCACAAGTCGTCGTCGCTGCTTGCTTCCGTTGATGTC
GAGGTGGGTATCGAAGGCGACAGGAGGCGGGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1051:276767..277249+

>mRNA_F-serratus_M_contig1051.550.1 ID=mRNA_F-serratus_M_contig1051.550.1|Name=mRNA_F-serratus_M_contig1051.550.1|organism=Fucus serratus male|type=CDS|length=966bp|location=Sequence derived from alignment at F-serratus_M_contig1051:276767..277249+ (Fucus serratus male)
ATGGTTGTGGTAGGGCCATCGTCGACTGGCGGCGGGGTGACTCGGTCCAC
GGCGAGCACTTCGGAAGAGAGGCCCGTTGGCCGAGATGTTGCCGGCGCCC
CGGCGTTGATCTCGTTCTCCCGCGACCCCACTTCATCAACCTTCCCTGCC
TCTTCCCCCAAGCTCCAGGGCCACGCTGACGCAAGAGGGTTGTCATCGTT
GTCGTCGCTCGATTTCGCCAGCTCGTCGAGGGGGCATATCCGGGGCTTTT
GCTCCGACTCGCGACGTCGCTCACAAAGAGATTCACGAATTCGGGAAGGA
AGCCTTAACACAATGGGTGTATACTGGCCTCTGCCGCCCGCCGTCGATGT
ATCTTCTAGGGACGCCTCCGGCTCCGCGTCGATGGGCGTCAGCGGGAGAA
GGATATCGTTGCCGCACAAGTCGTCGTCGCTGCTTGCTTCCGTTGATGTC
GAGGTGGGTATCGAAGGCGACAGGAGGCGGGAGATGGTTGTGGTAGGGCC
ATCGTCGACTGGCGGCGGGGTGACTCGGTCCACGGCGAGCACTTCGGAAG
AGAGGCCCGTTGGCCGAGATGTTGCCGGCGCCCCGGCGTTGATCTCGTTC
TCCCGCGACCCCACTTCATCAACCTTCCCTGCCTCTTCCCCCAAGCTCCA
GGGCCACGCTGACGCAAGAGGGTTGTCATCGTTGTCGTCGCTCGATTTCG
CCAGCTCGTCGAGGGGGCATATCCGGGGCTTTTGCTCCGACTCGCGACGT
CGCTCACAAAGAGATTCACGAATTCGGGAAGGAAGCCTTAACACAATGGG
TGTATACTGGCCTCTGCCGCCCGCCGTCGATGTATCTTCTAGGGACGCCT
CCGGCTCCGCGTCGATGGGCGTCAGCGGGAGAAGGATATCGTTGCCGCAC
AAGTCGTCGTCGCTGCTTGCTTCCGTTGATGTCGAGGTGGGTATCGAAGG
CGACAGGAGGCGGGAG
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