mRNA_F-serratus_M_contig1051.549.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1051.549.1
Unique NamemRNA_F-serratus_M_contig1051.549.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1051.549.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1051contigF-serratus_M_contig1051:275793..276738 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size508
Cds size507
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928881.906111-CDS-F-serratus_M_contig1051:275792..2758761622928881.906111-CDS-F-serratus_M_contig1051:275792..275876Fucus serratus maleCDSF-serratus_M_contig1051 275793..275876 -
1690962613.681935-CDS-F-serratus_M_contig1051:275792..2758761690962613.681935-CDS-F-serratus_M_contig1051:275792..275876Fucus serratus maleCDSF-serratus_M_contig1051 275793..275876 -
1622928881.9173567-CDS-F-serratus_M_contig1051:276315..2767381622928881.9173567-CDS-F-serratus_M_contig1051:276315..276738Fucus serratus maleCDSF-serratus_M_contig1051 276316..276738 -
1690962613.6919947-CDS-F-serratus_M_contig1051:276315..2767381690962613.6919947-CDS-F-serratus_M_contig1051:276315..276738Fucus serratus maleCDSF-serratus_M_contig1051 276316..276738 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1051.549.1prot_F-serratus_M_contig1051.549.1Fucus serratus malepolypeptideF-serratus_M_contig1051 275793..276738 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1051.549.1

>prot_F-serratus_M_contig1051.549.1 ID=prot_F-serratus_M_contig1051.549.1|Name=mRNA_F-serratus_M_contig1051.549.1|organism=Fucus serratus male|type=polypeptide|length=169bp
TSLGSELPDADQQEAISARRDLPPPRRAVAKPWEVSIGEAVSVWPVYGIS
ESTDEDGSESSVGSVEHKFNLLQRLWKRSSAGKRAGELGALSTHTSGPSV
FDGTTAKGAGNEPSVTDGKASRTWIIQAAASIPMSQKAEFKEALTTASQN
RMASNTTSSLSPASSAASR
back to top

mRNA from alignment at F-serratus_M_contig1051:275793..276738-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1051.549.1 ID=mRNA_F-serratus_M_contig1051.549.1|Name=mRNA_F-serratus_M_contig1051.549.1|organism=Fucus serratus male|type=mRNA|length=946bp|location=Sequence derived from alignment at F-serratus_M_contig1051:275793..276738- (Fucus serratus male)
ACTTCTTTGGGGTCCGAACTTCCTGACGCGGACCAACAAGAGGCGATATC
GGCCCGGAGAGACCTGCCTCCGCCTCGCCGAGCCGTAGCGAAGCCGTGGG
AGGTTTCTATCGGCGAGGCGGTCTCGGTATGGCCGGTGTACGGAATCAGC
GAGTCGACCGACGAGGACGGGAGCGAGTCGTCGGTCGGTTCTGTGGAGCA
TAAGTTCAACTTGCTGCAGCGGCTCTGGAAACGCTCTAGTGCGGGGAAGA
GGGCTGGAGAGTTGGGTGCGCTTTCCACCCACACCTCTGGACCTTCTGTA
TTCGACGGCACCACGGCGAAAGGTGCCGGAAACGAGCCTTCGGTGACAGA
CGGGAAGGCGTCACGAACGTGGATCATCCAGGCCGCCGCCTCCATACCGA
TGTCTCAGAAGGCAGAGTTCAAGGTAAGCTTTTTAGCTTTCCGCTTGTGG
CTTTTCCCCAAGCGACCCCCCCCCCCCCCGCCAACATCCAGGAAGTCTAG
GCAGTTTGAACCATGGGCCCTTTCCTCCGCTATCGCCTTGGAATCCCTGT
CTTTTGCTGGTGTTATATTTCGCATCCCCATTAATTTTTCTCGAGTACCG
AGGTGAGCCCCTCGCGTGGTCCTATCCTGTCATGGAGAAGTTCTTGCGTT
GGTACCTAGCAAGAGTTAACAAGTGTGTAGCCTTCCTCATCCTCATGAAA
CGAAAACTGATGTTCTAATATTGGCTCCACAACGCGCTATCCGCTCAGCG
CCCCAGTAAGTAGGGAAGACTTGTCGAAGCCCCGCGGCACCATGTGCTCG
AGTTCAGTTCCGTCGTGCATGCTAACCCATTTTCTTGTGTGCTCTTGGTC
GCGCCGCCTCAGGAAGCGCTCACGACCGCGTCCCAGAACCGTATGGCGAG
CAACACCACGAGCAGTCTAAGCCCTGCCAGTAGCGCCGCCAGCCGG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1051:275793..276738-

>mRNA_F-serratus_M_contig1051.549.1 ID=mRNA_F-serratus_M_contig1051.549.1|Name=mRNA_F-serratus_M_contig1051.549.1|organism=Fucus serratus male|type=CDS|length=1014bp|location=Sequence derived from alignment at F-serratus_M_contig1051:275793..276738- (Fucus serratus male)
ACTTCTTTGGGGTCCGAACTTCCTGACGCGGACCAACAAGAGGCGATATC
GGCCCGGAGAGACCTGCCTCCGCCTCGCCGAGCCGTAGCGAAGCCGTGGG
AGGTTTCTATCGGCGAGGCGGTCTCGGTATGGCCGGTGTACGGAATCAGC
GAGTCGACCGACGAGGACGGGAGCGAGTCGTCGGTCGGTTCTGTGGAGCA
TAAGTTCAACTTGCTGCAGCGGCTCTGGAAACGCTCTAGTGCGGGGAAGA
GGGCTGGAGAGTTGGGTGCGCTTTCCACCCACACCTCTGGACCTTCTGTA
TTCGACGGCACCACGGCGAAAGGTGCCGGAAACGAGCCTTCGGTGACAGA
CGGGAAGGCGTCACGAACGTGGATCATCCAGGCCGCCGCCTCCATACCGA
TGTCTCAGAAGGCAGAGTTCAAGACTTCTTTGGGGTCCGAACTTCCTGAC
GCGGACCAACAAGAGGCGATATCGGCCCGGAGAGACCTGCCTCCGCCTCG
CCGAGCCGTAGCGAAGCCGTGGGAGGTTTCTATCGGCGAGGCGGTCTCGG
TATGGCCGGTGTACGGAATCAGCGAGTCGACCGACGAGGACGGGAGCGAG
TCGTCGGTCGGTTCTGTGGAGCATAAGTTCAACTTGCTGCAGCGGCTCTG
GAAACGCTCTAGTGCGGGGAAGAGGGCTGGAGAGTTGGGTGCGCTTTCCA
CCCACACCTCTGGACCTTCTGTATTCGACGGCACCACGGCGAAAGGTGCC
GGAAACGAGCCTTCGGTGACAGACGGGAAGGCGTCACGAACGTGGATCAT
CCAGGCCGCCGCCTCCATACCGATGTCTCAGAAGGCAGAGTTCAAGGAAG
CGCTCACGACCGCGTCCCAGAACCGTATGGCGAGCAACACCACGAGCAGT
CTAAGCCCTGCCAGTAGCGCCGCCAGCCGGGAAGCGCTCACGACCGCGTC
CCAGAACCGTATGGCGAGCAACACCACGAGCAGTCTAAGCCCTGCCAGTA
GCGCCGCCAGCCGG
back to top