mRNA_F-serratus_M_contig1051.547.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1051.547.1
Unique NamemRNA_F-serratus_M_contig1051.547.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1051.547.1 vs. uniprot
Match: D8LBR8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBR8_ECTSI)

HSP 1 Score: 617 bits (1591), Expect = 6.990e-215
Identity = 330/530 (62.26%), Postives = 388/530 (73.21%), Query Frame = 1
Query:    1 GDIEPDDPLPRTMEELYRRMRNNPPAGQQSEKEPVLQP--LDLEFMEEAVRDVFRPMESDSWWEEHGDEWDRMAEDPASSFSVG--VDTRKPLVWGMGEYFGEEGPEERILDEDVEPFSLTAYKAGITIKGDIPSMDG---------WFERTPFAEYWDSLPDLRVTKRVYGFNAVDRMAALKFMMNCTYTGMHGSAESHQSGHFLWGYVDQLDWMRRSGRLSSLPGSVKERVRRAQWAAHLESLEAVDSLYGKEFDGLPSSAEREFARGWCRSARLFAAAAAHTNVDRVLLPLGAGYPPERILTDDG---YAGSGSYG-RRFESIPYGPAHLVVEAEADPAVV-VNTLRFVDSVRWLGSLRAPLFAALCILWQRACISYPARRKAARVLRRACYGSRRAKVAAWGRSFLSMFAPDLNYRKLSPPFGVDPAEEVEYDPDMEPRDPGKRPPRPPGYRTSNPLQRPWYDGRRPNAFT-----RGPDEDDDGI------GDAVGGMFPPQKAPPDLSFEALSRLERDMAETLK 1503
            G ++PDDPLPRTMEELYRR+ + PP   + + +  L+P   ++  +EEAVR  F+  E D+WW+E+G EWDRMAE+P   F++G   D    +VWGM +YFGEE PE  + DE    FSL+AYKAGI    + P+ DG          FERTPFA+YW+S+PDLR   RVY +NAVDRMAALKF+MNCTY GMHGSAES QSGHFLWGYVDQLDWMRRSGRLSS PGS+KER+RRAQWAAHLESL+AV++LYGKEFD LPS AEREFARGWCR+ARLFA AAAHTN++R LLPLGAGY PER+LTDD     A +   G R  ES+P+GP   V EAE D AVV +NT R V SVRWLG+LRAP+ A LC LW+R+C SYPARR+ ARVLR ACYG RRAK AAW +SFL +F PDLNYRKL+ P GVDPAEEVEYDPD EPRD  K  PRP G R  NPLQ PWY+GRRP+         G  EDDDG+        A GGMFPP + P D SFEA  R E+++ E L+
Sbjct:   50 GTLDPDDPLPRTMEELYRRIASEPPLNLEQQYKKALEPDAEEMGMVEEAVRATFKCTEDDAWWDENGQEWDRMAENPGKHFALGREEDRGGGVVWGMQDYFGEEAPEWGLSDEPAVNFSLSAYKAGIP---ERPAKDGEGSGRQAAELFERTPFAQYWESVPDLRTAGRVYAYNAVDRMAALKFLMNCTYNGMHGSAESMQSGHFLWGYVDQLDWMRRSGRLSSTPGSIKERIRRAQWAAHLESLDAVEALYGKEFDMLPSRAEREFARGWCRAARLFAVAAAHTNLERCLLPLGAGYAPERLLTDDDDFLTAAARKQGPRSLESVPFGPPDSVAEAERDSAVVALNTRRCVTSVRWLGTLRAPVLAGLCRLWRRSCASYPARRRVARVLREACYGGRRAKAAAWAKSFLFLFVPDLNYRKLTFPLGVDPAEEVEYDPDFEPRDFSKPYPRPVGSRPLNPLQWPWYEGRRPDPSAGLPGGEGWGEDDDGLLASPSAVAAAGGMFPPGREPVDGSFEAGQRREQEVMEDLR 576          
BLAST of mRNA_F-serratus_M_contig1051.547.1 vs. uniprot
Match: A0A6H5KEJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEJ4_9PHAE)

HSP 1 Score: 384 bits (987), Expect = 1.180e-124
Identity = 220/439 (50.11%), Postives = 260/439 (59.23%), Query Frame = 1
Query:    1 GDIEPDDPLPRTMEELYRRMRNNPPAGQQSEKEPVLQP--LDLEFMEEAVRDVFRPMESDSWWEEHGDEWDRMAEDPASSFSVG--VDTRKPLVWGMGEYFGEEGPEERILDEDVEPFSLTAYKAGITIKGDIPSMDG---------WFERTPFAEYWDSLPDLRVTKRVYGFNAVDRMAALKFMMNCTYTGMHGSAESHQSGHFLWGYVDQLDWMRRSGRLSSLPGSVK------------------------------------------------------------------------------------------ERVRRAQWAAHLESLEAVDSLYGKEFDGLPSSAEREFARGWCRSARLFAAAAAHTNVDRVLLPLGAGYPPERILTDDG---YAGSGSYG-RRFESIPYGPAHLVVEAEADPAVVVNTLR 996
            G ++PDDPLPRTMEELYRR+ + PP   + + +  L+P   ++  +EEAVR  F+  E D+WW+E+G EWDRMAE+P   F++G   D    +VWGM +YFGEE PE  + DE    FSL+AYKAGI  +    + DG          FERTPFA+YW+S+PDLR   RVY +NAVDRMAALKF+MNCTY GMHGSAES QSGHFLWGYVDQLDWMRRSGRLSS PGS+K                                                                                          ERVRRAQWAAHLESL+AV++LYGKEFD LPS AEREFARGWCR+ARLFAAAAAHTN++R LLPLGAGY PER+LTDD     A +   G R  ES+P+GP  LV EAE D AV  N  R
Sbjct:   50 GTLDPDDPLPRTMEELYRRIASEPPLNLEQQYKKALEPDAEEIGMVEEAVRATFKCTEDDAWWDENGQEWDRMAENPGEHFALGREEDRGGGVVWGMQDYFGEEAPEWGLSDEPAVNFSLSAYKAGIPGRA---AKDGEGRGREAAELFERTPFAQYWESVPDLRAAGRVYAYNAVDRMAALKFLMNCTYNGMHGSAESMQSGHFLWGYVDQLDWMRRSGRLSSTPGSIKVDPNSWWGRVSFALTIVPLVAAVESGAWDDDQVAAISVLGVSGDGSGRNDDLQLPELRRAVRAWRRVWRFRDPDIADRVVLDMPVHDSLQERVRRAQWAAHLESLDAVEALYGKEFDMLPSKAEREFARGWCRAARLFAAAAAHTNLERCLLPLGAGYAPERLLTDDDDFLTAAARKQGPRSLESVPFGPPDLVAEAERDSAVAGNAGR 485          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1051.547.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LBR8_ECTSI6.990e-21562.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KEJ4_9PHAE1.180e-12450.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1051contigF-serratus_M_contig1051:192089..201157 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_002960.1
Exons3
Model size1503
Cds size1503
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1051.547.1prot_F-serratus_M_contig1051.547.1Fucus serratus malepolypeptideF-serratus_M_contig1051 192089..201157 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928884.6378987-CDS-F-serratus_M_contig1051:192088..1929401622928884.6378987-CDS-F-serratus_M_contig1051:192088..192940Fucus serratus maleCDSF-serratus_M_contig1051 192089..192940 -
1690962614.6753972-CDS-F-serratus_M_contig1051:192088..1929401690962614.6753972-CDS-F-serratus_M_contig1051:192088..192940Fucus serratus maleCDSF-serratus_M_contig1051 192089..192940 -
1622928884.649306-CDS-F-serratus_M_contig1051:193177..1932641622928884.649306-CDS-F-serratus_M_contig1051:193177..193264Fucus serratus maleCDSF-serratus_M_contig1051 193178..193264 -
1690962614.6845117-CDS-F-serratus_M_contig1051:193177..1932641690962614.6845117-CDS-F-serratus_M_contig1051:193177..193264Fucus serratus maleCDSF-serratus_M_contig1051 193178..193264 -
1622928884.6587453-CDS-F-serratus_M_contig1051:200593..2011571622928884.6587453-CDS-F-serratus_M_contig1051:200593..201157Fucus serratus maleCDSF-serratus_M_contig1051 200594..201157 -
1690962614.6927178-CDS-F-serratus_M_contig1051:200593..2011571690962614.6927178-CDS-F-serratus_M_contig1051:200593..201157Fucus serratus maleCDSF-serratus_M_contig1051 200594..201157 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1051.547.1

>prot_F-serratus_M_contig1051.547.1 ID=prot_F-serratus_M_contig1051.547.1|Name=mRNA_F-serratus_M_contig1051.547.1|organism=Fucus serratus male|type=polypeptide|length=501bp
GDIEPDDPLPRTMEELYRRMRNNPPAGQQSEKEPVLQPLDLEFMEEAVRD
VFRPMESDSWWEEHGDEWDRMAEDPASSFSVGVDTRKPLVWGMGEYFGEE
GPEERILDEDVEPFSLTAYKAGITIKGDIPSMDGWFERTPFAEYWDSLPD
LRVTKRVYGFNAVDRMAALKFMMNCTYTGMHGSAESHQSGHFLWGYVDQL
DWMRRSGRLSSLPGSVKERVRRAQWAAHLESLEAVDSLYGKEFDGLPSSA
EREFARGWCRSARLFAAAAAHTNVDRVLLPLGAGYPPERILTDDGYAGSG
SYGRRFESIPYGPAHLVVEAEADPAVVVNTLRFVDSVRWLGSLRAPLFAA
LCILWQRACISYPARRKAARVLRRACYGSRRAKVAAWGRSFLSMFAPDLN
YRKLSPPFGVDPAEEVEYDPDMEPRDPGKRPPRPPGYRTSNPLQRPWYDG
RRPNAFTRGPDEDDDGIGDAVGGMFPPQKAPPDLSFEALSRLERDMAETL
K
back to top

mRNA from alignment at F-serratus_M_contig1051:192089..201157-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1051.547.1 ID=mRNA_F-serratus_M_contig1051.547.1|Name=mRNA_F-serratus_M_contig1051.547.1|organism=Fucus serratus male|type=mRNA|length=9069bp|location=Sequence derived from alignment at F-serratus_M_contig1051:192089..201157- (Fucus serratus male)
GGAGATATTGAACCCGACGATCCGCTGCCTCGCACGATGGAAGAGCTGTA CAGACGCATGCGGAACAACCCTCCGGCTGGGCAGCAGTCTGAGAAGGAGC CCGTGTTACAGCCGCTAGATCTTGAATTTATGGAGGAGGCCGTGCGGGAC GTGTTCCGCCCGATGGAGAGCGACAGCTGGTGGGAGGAGCACGGCGATGA ATGGGATAGGATGGCGGAAGACCCGGCGTCTTCTTTCTCCGTGGGCGTGG ACACGAGAAAACCCTTGGTGTGGGGAATGGGGGAGTACTTTGGGGAAGAA GGGCCAGAGGAGCGGATTCTAGACGAGGACGTCGAGCCGTTCAGTCTCAC CGCATACAAGGCTGGGATAACAATCAAAGGAGATATACCATCCATGGACG GGTGGTTCGAGAGGACCCCATTTGCCGAATACTGGGACTCGCTGCCGGAC CTGAGGGTCACCAAACGCGTGTACGGTTTTAACGCCGTTGATCGCATGGC CGCGCTCAAGTTCATGATGAACTGCACCTATACCGGCATGCATGGCTCTG CGGAAAGTCATCAGGTGAGTGAGGCCAACCCGACTCGGGGCCATTTCAAC CCCAGCGGGTTTCCTTTGAATTCCGTGAGTTTTGTTCTGGTTAGCGTTCA TTCTCTGGCGATTGTGTGAGGAGGTGCAACTTGTAAAAATAAATCCTGAC ATCCCCAAGATTGTACTCGTACCGTGAGGCCGACTCTTGTGGGAACCATA CCAAAAACTTTAAACGAAAATGGCCCAAATCCGTTGTTTTTTTTGGACCA AAAACATGGTCGGAGTCAATCTTATGGCAAAGGTTTTTTAAAGAAAAATC CGAACAGCACCTAGACTTTTTGAGCATCCCCCGTAGGGGGAGGAAATGTC AAAACGTTTAGGCGGGGTCAAAGGCTGCAGTGACAAAAACCTCTTCATGG TATTAAACAGGTTCCCCAATGTAGATAACATTGGGTCAACAATATAATGT CGGGGAGAAACCCACCGTTATACTGTACATTTACATTAATCTCCATGCAG GGACACCATAAAAGCATTAGACAAAAACCAGAGACAGAGTACCACCAAAT GGTATTATTAATAGTAATATTGTACATTCGACGTAGGGATATAAGGTTGT TGATGAATATACCATTTCAGTTTGGGGTAGACAGGGAGCTTAGGTTACAC TAAATTATCCAGGCTCGGGTGGGTGTAATTTGTGGTCATATCTTATTCAC CAATCAATAATCAAGCAATACTAGTAGAATGGGAGAGGTTCATTAGTGTA CTACGTCCTACCAATAATTGCCATCTATGTTAGTATACTTAACCTTTCCA TTGTTTATCATGAAGGGTTATCCATGTAAGAGACGGGGAAATTTAGGTTA AAGAAAAGTCAACTCAGAACAACCACCTGGGATATTACTCCAAGGCCATC AGTGTCATAGAGGAGGATAGAGGTACTGAGATATATATTACAAATCAGAG CACCATTGCGTCTTCTGGGTACATAGACGTTTAGGTGAGGTCACCTTCTA CATGATTGTCATTGTATATAATTTATACTCGGAGTAGGTACATAGTATGA TCAAAGACAATACAGTTTTAGTAGTATTCGTAGATACCTACGAGGTACAG TATAATTGCAGGTGGAGTATGATTTTTGGCTTCAACATAGTCCAGAGAAT AGAAAGAGCAGTATTCACCTGAACATGAATGGGAGAGGTTTATTAGTATA CTTCGTCCTATCCTTAATTGCCATCTATATTAGTATACTTTAACTTACCA TTATTTATCATGCAGGGTTATCTATATAAGAGACGGGGAACTTTAGGTTA AAGAAAAGTTAGAAGGAGAAATCAGGATAGCCCTTAGGATATTACAACTA GGGCCAGCAGTGTCATACGGGGGGGGATAGAGGTACTGAGGTATATATTA CACGTCAGAGCTCCCTTGGGTCTTTGGGTACATCGACATTTAGGTGAGGT CAAATTCTACATGATTATCATTGTGTACAGTTTATAGGTGCGTAGTATGA TGAAAAACAATACAGTTTTTAGTAGTAGTCGTAGATACCTACAAGGTACA GTATATAATTTCCTGTGAAGTATGATATTTGGCTAAGAGTGCAGACAGGG GCAAGAGGACCATGAAGCGGATATCTTCAACACAATCCAGAGAGTCGAAA AAGCAGTATTCACCTGAAAATTGAAGAGCAGCAGTAGGAGATCACACGAG GAGGTAAGAAGCACGCAGAAGAACTGGGTTCCTCGCACCAACTTGTCAGA TCTACGCCACACCAATACTCCTTAGGCGAAGGCTGAGCTATGGTCCCAAA TTTAAACTGAACAAGCGGGCCTCAGACCCTCATGTGATCTCCCATCCATT CCCAGATGATGGTCCGAAATATCTTGAGCTTCTGGTCTTGTATTGTTTTG GCTCGACGACTAGTCTAAAGCTTGTCTAAGCTTGTCTATGCGGGAGAGAT GCAAAATTGAAATTGCCGAATGGAAATGGCTTACGTATTTTTCGAAACAA GAGGGTGAACTACGGGTATGCAAGAGCATACAAGCTGGAGGGGAGCTCTA CAGTATTATAGTACTATTAATACTACCAGTGAAGCGCAGACACCAACCTA CGTCGATATTTTACTCTCGTTCACGCATTGTCGGTGGATGATGATGAACA CAAGCACAGCCCGGCAAGAATGCACTACTCTTAAGTTTGTAAACTACGTG CAGAACTACAGACAGACGCCGCACCGACGTTGTTGTGGTTTGTTGGCTGC CAAAATACCACGTCAATAAACTCGCTCCACTGCTCTACTAGATCAAAATT GCTGATGTATGTATGTATGCATGTATGTATGTATGTATGTATGTATGGTC ACATATATAGCAACAGTGTGGATCAACCGCGTAAGGTTGCCAATCCTGCT CGTGGTCAGCTATTCAGGTAAAATTGATATTTCCCTGTCCACGTTCGAGC CTGAAAATTTAGTCTCGCGAGACGGGTTCGGCAGTCCCGTCCCGCGTCAA CGTGTTCATCTCCATATTCAGGCTGAATCTGGTGCTTATTTGCGGGATTC CTCCCGAGTTCCGCGGCGGCGTCCATTTATTTATTTAAAACCGCCATGCG CCATTAAGTCAGTCCCGAGTTTATCGGGTCACGCAATTGCGTACTGATGG CGTTCACTGCCGAGAGTCCGCCGGCACAGGGCCAGTAAACCTCAAGGTAG TTCCGAACGGGTGCTGCCTTGGCAGGTTACCATGGACCAAATGATATGAG CCTCAATTTCCCACACCCACTATTGGTATGAAGTGGGCATGTCGAAAGTA CCGGCGAATTGTGCGGTGTCGATACTCGTCAGGCTCCCCGGAATTGCAGC AGGTTCGTCTTCTAGTACCGTTGAAATATGGGTACTATACTGAATCTAAG ACTTATATTCAGTATAGTACCCATACTTCTATACTGCTGTACTGTAGGAT ACAGTACGTTGCCCTGGCGATAATTCTATCAGACTCGGGCGAACGGATGT ATCGAGACAAAATTCCACCACAACGAATGCACACAGCATGTCGTATCATG ACACGGGGGTCATGTTGTAACAGGCGTTTTGCGTAGTTCGACGGCAACTG TGAAAGCTTCTGTAGTCTGGACCAGCTGGTCGCGTCGCTATGCGCCGCAC ATGAGGGAAAATCTGCTTCCGGTACGTGTCATCCGAATACAGAAGGCTAC ACCAGAAGATACTTGTACAGACCACAAGGTTTGCTGTATTGTGGGGGGTG CACTTGGACTATAAATATCATGAGTAGGCAGCCTATTATACCAACTACCT GGTGCTTTTTCTCAACAAACTCTTCTCGAACCGTTGACTGTTGCTGTTGA CTGTTGATGACAGGATCGAGCGCTTCCTGTTTCGGTGAAAATCGGGATTT GCTGTCGTCCCAGAATCTAGATGAAAGTAACAGTAATCTACAAGTATAGA CTGCTGTATAGTACCAGTAGTATGCAAACAGTTCAGCTACAGTACGGGTG TGTGTGTGTGTGTATTTATTAAATTGCACCTAACCGCGCAATCCGGCCAT GTAGTCTACTCATGTGTGTGTGTGTGTGTGTGTGTGCTACTTACAGTGTG CTGGGTACACCAGCGTATATACTATATGTATGTATTGGATGTAGTTATGT GGAATCAAACTCTGTACCAGTACTTGTTGCAGATGATGATACCACTTCTG GTGTGTCGCCAACAAGTAGAGGAGCCCACAAAAAGACGTATGGAATGCGG AACCTAAGCCTCTCTTGAAGTGCTGATGCTTTGGATCGACTGCCTAAGCA TAACAACCGTCCACGGTGCCTGCGTTTAGTCAACTCGGGGATACACGCGC CGCATCCACTTGACCTTCGGGGAGTTATCCTCAAGTCCCCCAAGCCACCT ATCCTCCTTAACTTAGAGCATCTCAATGACCTCGGACCCTGCCGCCAACG TCCTCTCTCTTCTCTTGAGTAAAAAACTATGAACCTCAATTCGACCATAC CCTTGGCGATAGCGGCGCATTCCTGGCAGAGGTAACTATGTATTTGAGTT CTAGCAACGTTATTGGCCAAATGTAGTAATAGTTGCGCCGCGTGCGAAAT CCGTTTGCAGTTTTGTATCGCTGGTGCAATCGAATCTGGACCATCACTAG AAAAAAAAAAATGCCTAACAAGGGGAGAACGATTAAATCGTTAGTGCACA AAATTCGACTTCACGGTCGACGAGGAAAAGGAATGGCTGAATCCTTCTCG CGAGAAAAATTAAGGCACGCACCGCAGAAGAAGGGTGGATGAGAAATCCT GTGTGACCTTCCTCCTGTGTGACCCCGGCTGGTACGTCCAACGAACATGA TGTCCAGAATATATGGGAAGAAAGCACACTAAACACATGAGAGCCCGCCG GACATTCAATTATTTCATGGGAAAATATCTTTTGTTATCCTTTCCTCAAG GATTATTATCAATAGTACTCTATAGTAAGTATTATTATTGTTATTGTTAT TTCACTCGTAATGCAGCACCAGGGGATACCAGGGGATGCGCAAATCGGTC GGCCCTTCCGACGAGGTTAGTTTTGGGTCTGTAGCATCTGTCTAGAACCT CACCATGTCTTCAAGACCATGATAAGGGAAATGACCTGATGCCGAGAGCT TAAAGTTTTGAAAGTATACTGTTGAGACCGCTACTACACTACAACTAAGA CTACACAAGCGATTATTTTAAAAACGCAACTGGTGTGATTATTATTTATA AATTTGATAGAACCCTCGTGCTGCCGATCATCTAAACAAGGAGCCGCACC CACACCATCACCTACCGAATCAAAACGAGACGACTGGATGGGTCGTTGCT GCGGATAACCACCACCGACCGTCTTGTCACGTACGGTACACCCGTATAGT CAACAAGAAGAGAGTTATATACACTTGTATTCATACCATAGTTCAAATGC GATCCGAGAGGTCGACCAGTTTAAAGAAAGATCTGAATGCATCTTAACCC TAAACCCTTCTGAGCGTCTCCCACCCCAATCACGGGGGGAAGGAAATTCT CAAAACGTTGTTTATATAGGTGGGATCATAGGCTGTAAGGCAAAGCCTCT ATTGTTACATGGTATTTAAACGGGTACCCCGATGGTATTAATAGTAACAT TGGATCAACAGTATAATATCGGGGAGAAACTCGCCGCCAGACTGTACACT TACATTAATCTCCATGCTGTTACAGTAGTGCTGTCACCACATTACCCTAT TACTTACTGTATAATTAATACTGGTAGTATTTAATAGAAACTAGACAAGC GATGCAATGGTACGTCATGGGAATCTCGTGCTTATAGCTTATGTTGTTCT GTCGTGTCACCACTATCATCTATCATCAATAAATAGGTTGGAGGATGGGG GTTTTCACTTTTACTTTACTGCTTATACTAGTTATAGCATCGCCGTGCTC TATTTTTTTCCCTATTGGAGCATCTGACTGTCCCCATATATGCCATAAAG TAGTTAAATGCTCTTTATCGTACTTTGAAACAAAGGCAAAGGCACGTTTA TTTCACATCTCTTTTTGTTGTTGTTCGTTTTTTGTTTTTTTCCGCTAAAA AAGCAAGTCTATCAATAGCTTCGTTGTTTGAGTGGTTGTTGGTTCGTATC AGGTCGTAGGTCGCACATTCGTGAATTTATCGGCGAAGAAAGCCGATTCG CCACGACGAGCCTCTCACGACCCACTCCTGAGAGGACTCTCCCCCAGTGA CTTTCGGCTGTGTTCATCCCACATAAATAGCCGCCCTGGTGTAGGAGGGG AGGAGGGACATCGACATCGGAGGGAGCCGTTTCGTGAAACATGCAAGTAC CTTCACTGCGATTCTATTCCATCGCGAAAACTATGATCACAACAATTGCT CACGAGGTTCGCTTAGAATTATGGTACCCCTGGTAGCACTACAGTACTGT ACACCACACGAAATCACATGCGATCGCCCTTGTGGAGATTTTGCGTATAT TAATAATGCGAAATCGGGGGTTTCCTCACGAAGAGATAAGTTTTGCGTAT ATTCGACTACCTCTCGACCGCACATTGTTATACGGCTTGCACGCGGTGGT GATGCATGCGTCCCCGCCAGCCCCCCCGGTAGTTCATTTCATTTCGCCAG AAGTTGCGAGGCCCAGCCTGTCCAACTACATGGGTTACAGCGCGGACATT GCGTACAGAAACAGCAACATCGGGTTACGCAGCTGCCCCACCGGTAGTTC ATCCCATTTCGCCAAAAGTTGCGATTCCTACAGTAGCCTGGCCAACTATT TACACGGGGAGCACTGCGGGGACATTGCGCGCTGCTCTAATATGAATATA CAACAGTAGTGTTGTACACCTGTCTGTAGTGTACTGTTACATGTTTTCCA AGTACTTTGCTTCGTATGAACGGCTGCATTAGAATACCGCAATTTCATTC CATTTTTAAAAATATATAATATGGCCGCTGGAAAGCGCCTTTTAACGGTG CCGCATTGGCGTCAGGCAGAGATAAAAGATGACATTGAGCGCAGATGAGC AGGCAGGGGCTCAATGCTTAAGGCGATCAAAACACCGTTTGAGATATCGC GTATCGTTGCTCATCTGTCATATATCGTAACGCATATCCCTTATTTAGGC GCACGTCGGGAAAAATTGGCCCACGGATCGCCGCCGAAAAAAACCTCGCT TATGGGGTTGCAACACCCTATTAAAATATCGATATTTGCCCGTTATGAGT CAAGGCGGTGTGTGCGCTCCAATCTAAGGGTGTTAAGAGGGCGCAAGCGT TGACGACATTCGTTTGGTGGTAGATGGCTCCAAGATCCCCCGTTCCCATG TCCCAACCGCGAAGAACGCCAACGTCGGGTGAAAATAAACTTTTTGTTTG CCACCTGCGCAAGGCAGAGGGCTACCGTTACATAACTTGTTCCTTACTAC CGTATTAGTCAACCCATAATCTCCTCCATCGGATAATTCATACGGGTACA AGTGAAAAACGAAACACGCCCTTGAAAGATCCTGAGGTTTCCCCTGCGTC AGGTGTCCTTAACCCGCCATAAAAATAATACCTCCACGGTACTGTCGCTC TTTCCGCGATACTATTGATACCATCTTCAGTGTACTCACGGCAGATTCCT GGATTGCATTGAAACGCTTTACTGTCGTGTATCTTCGTCATACCTCATTT GAGCAACCTATCGCAATGTTTGGTTTGCTTCGACCTTGTCAATCGCATTT TTCCGACCTGCCATTACCTTTGACGGCGAGCTGCAATACCAAACAATGAG CCTAATGGCTGATTCGCTCTTCTTCTTTTCCCCTCCGCGCCAGTCCGGAC ACTTTCTGTGGGGATATGTCGACCAACTCGACTGGATGAGGCGTTCGGGA CGCCTATCGAGTCTACCGGGGTCCGTCAAGGTCGACAGGGAATCGTGGTG GGGACGCGTGAGCTTTGCCTTGACTATTGCTCCGCTGGCCGCAGCGGTAG AGAGCGGACTGTGGGAAGAAGACGCCGTCTCCATTCTAGACGCGGAAGAT CTTCAGCTGCCGGAGATGCGGCGCGCGGTGCGAGCTTGGCGCCGAGTGTG GCGCTTTAACGACTTCGACATACTCTCCAGGGTGGCGATGAGCATGCCGG TGCACGACGCCCTCCAGGAGCGAGTGCGTCGGGCGCAGTGGGCGGCGCAC CTGGAGTCGCTGGAGGCTGTCGACTCACTCTACGGCAAGGAATTCGACGG CCTGCCGTCTTCCGCCGAGCGGGAGTTCGCGCGTGGTTGGTGTCGATCGG CCCGTCTGTTCGCCGCCGCCGCCGCGCACACCAACGTCGATCGGGTCTTG CTCCCGCTTGGGGCAGGATACCCTCCGGAACGGATACTGACGGACGACGG CTACGCGGGTAGCGGCAGCTACGGTAGAAGGTTCGAAAGCATTCCGTACG GGCCCGCGCACCTGGTGGTGGAGGCAGAGGCGGATCCTGCGGTGGTCGTA AACACTCTCCGATTTGTAGACTCCGTCAGGTGGCTAGGCTCGCTGCGCGC GCCGTTGTTCGCCGCTCTCTGTATCCTTTGGCAGCGGGCGTGCATCTCGT ACCCCGCCAGGCGTAAGGCGGCGCGAGTACTTCGTCGCGCCTGTTACGGT AGCAGAAGAGCCAAGGTTGCCGCTTGGGGAAGGTCGTTCCTGTCCATGTT TGCCCCAGACCTCAACTATCGAAAACTCTCGCCACCCTTCGGTGTCGACC CCGCCGAGGAGGTGGAGTACGATCCTGACATGGAGCCACGCGACCCGGGA AAGCGACCTCCACGCCCCCCTGGCTATCGTACATCAAACCCCTTGCAGCG GCCATGGTACGACGGTCGGAGACCGAACGCGTTTACGAGGGGACCGGATG AGGATGACGATGGGATCGGAGACGCGGTAGGAGGCATGTTTCCACCTCAG AAGGCTCCGCCGGACCTCAGTTTCGAGGCCTTGAGTAGGTTAGAGAGGGA CATGGCCGAAACATTGAAG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1051:192089..201157-

>mRNA_F-serratus_M_contig1051.547.1 ID=mRNA_F-serratus_M_contig1051.547.1|Name=mRNA_F-serratus_M_contig1051.547.1|organism=Fucus serratus male|type=CDS|length=3006bp|location=Sequence derived from alignment at F-serratus_M_contig1051:192089..201157- (Fucus serratus male)
GGAGATATTGAACCCGACGATCCGCTGCCTCGCACGATGGAAGAGCTGTA
CAGACGCATGCGGAACAACCCTCCGGCTGGGCAGCAGTCTGAGAAGGAGC
CCGTGTTACAGCCGCTAGATCTTGAATTTATGGAGGAGGCCGTGCGGGAC
GTGTTCCGCCCGATGGAGAGCGACAGCTGGTGGGAGGAGCACGGCGATGA
ATGGGATAGGATGGCGGAAGACCCGGCGTCTTCTTTCTCCGTGGGCGTGG
ACACGAGAAAACCCTTGGTGTGGGGAATGGGGGAGTACTTTGGGGAAGAA
GGGCCAGAGGAGCGGATTCTAGACGAGGACGTCGAGCCGTTCAGTCTCAC
CGCATACAAGGCTGGGATAACAATCAAAGGAGATATACCATCCATGGACG
GGTGGTTCGAGAGGACCCCATTTGCCGAATACTGGGACTCGCTGCCGGAC
CTGAGGGTCACCAAACGCGTGTACGGTTTTAACGCCGTTGATCGCATGGC
CGCGCTCAAGTTCATGATGAACTGCACCTATACCGGCATGCATGGCTCTG
CGGAAAGTCATCAGGGAGATATTGAACCCGACGATCCGCTGCCTCGCACG
ATGGAAGAGCTGTACAGACGCATGCGGAACAACCCTCCGGCTGGGCAGCA
GTCTGAGAAGGAGCCCGTGTTACAGCCGCTAGATCTTGAATTTATGGAGG
AGGCCGTGCGGGACGTGTTCCGCCCGATGGAGAGCGACAGCTGGTGGGAG
GAGCACGGCGATGAATGGGATAGGATGGCGGAAGACCCGGCGTCTTCTTT
CTCCGTGGGCGTGGACACGAGAAAACCCTTGGTGTGGGGAATGGGGGAGT
ACTTTGGGGAAGAAGGGCCAGAGGAGCGGATTCTAGACGAGGACGTCGAG
CCGTTCAGTCTCACCGCATACAAGGCTGGGATAACAATCAAAGGAGATAT
ACCATCCATGGACGGGTGGTTCGAGAGGACCCCATTTGCCGAATACTGGG
ACTCGCTGCCGGACCTGAGGGTCACCAAACGCGTGTACGGTTTTAACGCC
GTTGATCGCATGGCCGCGCTCAAGTTCATGATGAACTGCACCTATACCGG
CATGCATGGCTCTGCGGAAAGTCATCAGTCCGGACACTTTCTGTGGGGAT
ATGTCGACCAACTCGACTGGATGAGGCGTTCGGGACGCCTATCGAGTCTA
CCGGGGTCCGTCAAGTCCGGACACTTTCTGTGGGGATATGTCGACCAACT
CGACTGGATGAGGCGTTCGGGACGCCTATCGAGTCTACCGGGGTCCGTCA
AGGAGCGAGTGCGTCGGGCGCAGTGGGCGGCGCACCTGGAGTCGCTGGAG
GCTGTCGACTCACTCTACGGCAAGGAATTCGACGGCCTGCCGTCTTCCGC
CGAGCGGGAGTTCGCGCGTGGTTGGTGTCGATCGGCCCGTCTGTTCGCCG
CCGCCGCCGCGCACACCAACGTCGATCGGGTCTTGCTCCCGCTTGGGGCA
GGATACCCTCCGGAACGGATACTGACGGACGACGGCTACGCGGGTAGCGG
CAGCTACGGTAGAAGGTTCGAAAGCATTCCGTACGGGCCCGCGCACCTGG
TGGTGGAGGCAGAGGCGGATCCTGCGGTGGTCGTAAACACTCTCCGATTT
GTAGACTCCGTCAGGTGGCTAGGCTCGCTGCGCGCGCCGTTGTTCGCCGC
TCTCTGTATCCTTTGGCAGCGGGCGTGCATCTCGTACCCCGCCAGGCGTA
AGGCGGCGCGAGTACTTCGTCGCGCCTGTTACGGTAGCAGAAGAGCCAAG
GTTGCCGCTTGGGGAAGGTCGTTCCTGTCCATGTTTGCCCCAGACCTCAA
CTATCGAAAACTCTCGCCACCCTTCGGTGTCGACCCCGCCGAGGAGGTGG
AGTACGATCCTGACATGGAGCCACGCGACCCGGGAAAGCGACCTCCACGC
CCCCCTGGCTATCGTACATCAAACCCCTTGCAGCGGCCATGGTACGACGG
TCGGAGACCGAACGCGTTTACGAGGGGACCGGATGAGGATGACGATGGGA
TCGGAGACGCGGTAGGAGGCATGTTTCCACCTCAGAAGGCTCCGCCGGAC
CTCAGTTTCGAGGCCTTGAGTAGGTTAGAGAGGGACATGGCCGAAACATT
GAAGGAGCGAGTGCGTCGGGCGCAGTGGGCGGCGCACCTGGAGTCGCTGG
AGGCTGTCGACTCACTCTACGGCAAGGAATTCGACGGCCTGCCGTCTTCC
GCCGAGCGGGAGTTCGCGCGTGGTTGGTGTCGATCGGCCCGTCTGTTCGC
CGCCGCCGCCGCGCACACCAACGTCGATCGGGTCTTGCTCCCGCTTGGGG
CAGGATACCCTCCGGAACGGATACTGACGGACGACGGCTACGCGGGTAGC
GGCAGCTACGGTAGAAGGTTCGAAAGCATTCCGTACGGGCCCGCGCACCT
GGTGGTGGAGGCAGAGGCGGATCCTGCGGTGGTCGTAAACACTCTCCGAT
TTGTAGACTCCGTCAGGTGGCTAGGCTCGCTGCGCGCGCCGTTGTTCGCC
GCTCTCTGTATCCTTTGGCAGCGGGCGTGCATCTCGTACCCCGCCAGGCG
TAAGGCGGCGCGAGTACTTCGTCGCGCCTGTTACGGTAGCAGAAGAGCCA
AGGTTGCCGCTTGGGGAAGGTCGTTCCTGTCCATGTTTGCCCCAGACCTC
AACTATCGAAAACTCTCGCCACCCTTCGGTGTCGACCCCGCCGAGGAGGT
GGAGTACGATCCTGACATGGAGCCACGCGACCCGGGAAAGCGACCTCCAC
GCCCCCCTGGCTATCGTACATCAAACCCCTTGCAGCGGCCATGGTACGAC
GGTCGGAGACCGAACGCGTTTACGAGGGGACCGGATGAGGATGACGATGG
GATCGGAGACGCGGTAGGAGGCATGTTTCCACCTCAGAAGGCTCCGCCGG
ACCTCAGTTTCGAGGCCTTGAGTAGGTTAGAGAGGGACATGGCCGAAACA
TTGAAG
back to top