mRNA_F-serratus_M_contig1051.545.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1051.545.1
Unique NamemRNA_F-serratus_M_contig1051.545.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig1051.545.1 vs. uniprot
Match: A0A7S2WIF9_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WIF9_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.850e-21
Identity = 48/100 (48.00%), Postives = 62/100 (62.00%), Query Frame = 1 
Query:    1 MAQIIDSLLASADSFAFREPVDWRGLGLHDYPVIITRPMDLGTVKLRLQQGAYSGADEFAADVRLIWDNCRTYNCGGVPRKLHKAADVLSKRFEARFVKL 300
            +++++    A AD+  FRE VDW+GLGL DYP II +PMDLG VK  ++   Y    E A DVRLIW NC TYN  G     +  A  +SK+FE +F KL
Sbjct:   11 LSKLLGHFYAKADAEPFREAVDWKGLGLFDYPQIIKKPMDLGQVKRNIETSKYKTIHEAAEDVRLIWKNCMTYNADG--SDFYILAQNMSKKFEDKFSKL 108
[Close]
BLAST of mRNA_F-serratus_M_contig1051.545.1 vs. uniprot
Match: A0A7S1XM82_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XM82_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 2.160e-21
Identity = 48/105 (45.71%), Postives = 64/105 (60.95%), Query Frame = 1 
Query:    1 MAQIIDSLLASADSFAFREPVDWRGLGLHDYPVIITRPMDLGTVKLRLQQGAYSGADEFAADVRLIWDNCRTYNCGGVPRKLHKAADVLSKRFEARFVKLGEAGA 315
            MA  +  L    +++ F EPVDW+G+GL DYP II  PMDLGTV+ +L    Y  A E A D+RL+W NC TYN  G     +K A+  SK+FE +F  + +A A
Sbjct:   12 MASGLGFLDKQQEAYIFAEPVDWKGMGLFDYPQIIKHPMDLGTVRQKLNNKEYRTASECAEDIRLVWRNCMTYNQDG--SDFYKIAERFSKKFETKFAPVAKAEA 114
[Close]
BLAST of mRNA_F-serratus_M_contig1051.545.1 vs. uniprot
Match: A0A7S0F5U8_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7S0F5U8_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 2.790e-21
Identity = 48/100 (48.00%), Postives = 65/100 (65.00%), Query Frame = 1 
Query:    1 MAQIIDSLLASADSFAFREPVDWRGLGLHDYPVIITRPMDLGTVKLRLQQGAYSGADEFAADVRLIWDNCRTYNCGGVPRKLHKAADVLSKRFEARFVKL 300
            +++I+ +++A AD+  FREPVDW+GLG+ DYP II +PMDLGTVK R+    Y+   + A DVRL+W NC TYN  G        A  LSK +E +F K 
Sbjct:   12 LSKIVTAVMARADAAPFREPVDWKGLGIMDYPQIIKKPMDLGTVKKRISGRKYNTVFDAANDVRLVWTNCMTYNQDG--SDFFVIAKRLSKLWEDKFAKF 109
[Close]
BLAST of mRNA_F-serratus_M_contig1051.545.1 vs. uniprot
Match: A0A0G4J1W6_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4J1W6_PLABS)

HSP 1 Score: 99.4 bits (246), Expect = 2.820e-21
Identity = 49/97 (50.52%), Postives = 63/97 (64.95%), Query Frame = 1 
Query:   10 IIDSLLASADSFAFREPVDWRGLGLHDYPVIITRPMDLGTVKLRLQQGAYSGADEFAADVRLIWDNCRTYNCGGVPRKLHKAADVLSKRFEARFVKL 300
            I+  + A AD+  F +PVDW  LG+ DYP II  PMDLGT+K +L+ G Y+   EFA DVRL W+N +TYN  G    ++ AAD LSK F+ R  KL
Sbjct:   81 ILKQVAARADAAPFLDPVDWEELGIPDYPEIIKNPMDLGTIKKKLEDGKYANEQEFADDVRLTWNNAKTYNQPG--SGIYVAADNLSKLFDRRMQKL 175
[Close]
BLAST of mRNA_F-serratus_M_contig1051.545.1 vs. uniprot
Match: A0A7S0UGI7_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UGI7_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 4.350e-21
Identity = 45/100 (45.00%), Postives = 64/100 (64.00%), Query Frame = 1 
Query:    1 MAQIIDSLLASADSFAFREPVDWRGLGLHDYPVIITRPMDLGTVKLRLQQGAYSGADEFAADVRLIWDNCRTYNCGGVPRKLHKAADVLSKRFEARFVKL 300
            M++++ S++  +D+  FR PVDW+G+GL DYP +I +PMDLG+VK  +    Y    E A D+RL+W NC TYN  G    L   A  LSK+FE ++ KL
Sbjct:   12 MSKVLQSMIQRSDTEPFRVPVDWKGMGLFDYPTLIKKPMDLGSVKRNINARKYKSIPEAAEDIRLVWTNCMTYNQDGSDFFL--LAKNLSKKFEEKYSKL 109
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1051.545.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2WIF9_9STRA1.850e-2148.00Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S1XM82_9STRA2.160e-2145.71Hypothetical protein n=3 Tax=Phaeomonas parva TaxI... [more]
A0A7S0F5U8_9STRA2.790e-2148.00Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A0G4J1W6_PLABS2.820e-2150.52Uncharacterized protein n=1 Tax=Plasmodiophora bra... [more]
A0A7S0UGI7_9STRA4.350e-2145.00Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1051contigF-serratus_M_contig1051:180369..181457 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score162.9
Seed ortholog evalue1.1e-37
Seed eggNOG ortholog2880.D8LBQ8
KEGG koko:K11724
Hectar predicted targeting categoryother localisation
EggNOG free text desc.acetylation-dependent protein binding
EggNOG OGsCOG5076@1,KOG1474@2759
COG Functional cat.BK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01001,ko03036
Exons2
Model size713
Cds size426
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1051.545.1prot_F-serratus_M_contig1051.545.1Fucus serratus malepolypeptideF-serratus_M_contig1051 180369..181170 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928884.5720856-CDS-F-serratus_M_contig1051:180368..1806201622928884.5720856-CDS-F-serratus_M_contig1051:180368..180620Fucus serratus maleCDSF-serratus_M_contig1051 180369..180620 +
1690962614.6458898-CDS-F-serratus_M_contig1051:180368..1806201690962614.6458898-CDS-F-serratus_M_contig1051:180368..180620Fucus serratus maleCDSF-serratus_M_contig1051 180369..180620 +
1622928884.582434-CDS-F-serratus_M_contig1051:180996..1811701622928884.582434-CDS-F-serratus_M_contig1051:180996..181170Fucus serratus maleCDSF-serratus_M_contig1051 180997..181170 +
1690962614.6573803-CDS-F-serratus_M_contig1051:180996..1811701690962614.6573803-CDS-F-serratus_M_contig1051:180996..181170Fucus serratus maleCDSF-serratus_M_contig1051 180997..181170 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928884.597021-UTR-F-serratus_M_contig1051:181170..1814571622928884.597021-UTR-F-serratus_M_contig1051:181170..181457Fucus serratus maleUTRF-serratus_M_contig1051 181171..181457 +
1690962614.6663737-UTR-F-serratus_M_contig1051:181170..1814571690962614.6663737-UTR-F-serratus_M_contig1051:181170..181457Fucus serratus maleUTRF-serratus_M_contig1051 181171..181457 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1051.545.1

>prot_F-serratus_M_contig1051.545.1 ID=prot_F-serratus_M_contig1051.545.1|Name=mRNA_F-serratus_M_contig1051.545.1|organism=Fucus serratus male|type=polypeptide|length=142bp
MAQIIDSLLASADSFAFREPVDWRGLGLHDYPVIITRPMDLGTVKLRLQQ
GAYSGADEFAADVRLIWDNCRTYNCGGVPRKLHKAADVLSKRFEARFVKL
GEAGAGVGPRPARRARENWGRRLRRTLRRQPTRIGASLRGN*
back to top

mRNA from alignment at F-serratus_M_contig1051:180369..181457+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1051.545.1 ID=mRNA_F-serratus_M_contig1051.545.1|Name=mRNA_F-serratus_M_contig1051.545.1|organism=Fucus serratus male|type=mRNA|length=1089bp|location=Sequence derived from alignment at F-serratus_M_contig1051:180369..181457+ (Fucus serratus male)
ATGGCGCAGATAATCGACTCTCTGCTGGCCTCCGCAGACTCCTTCGCCTT
CCGAGAGCCTGTTGACTGGCGTGGCCTAGGGCTCCACGACTATCCCGTTA
TCATCACGAGACCCATGGACTTGGGAACGGTCAAGCTTCGCCTGCAGCAG
GGGGCTTACAGCGGCGCGGACGAGTTTGCGGCAGACGTCCGCCTCATTTG
GGATAACTGCAGAACCTACAACTGCGGAGGCGTTCCGCGCAAGCTGCATA
AGGTACTCTATCTCTGTATGCTCTACTTAGTCCATATTTCCACGTATTAT
ATGGCTGGCGTGGTTACTGCAACGGAGTCCCCCTTTCTTTTTTTGAGAGC
AGGGAGGAGCCCGATCTTGCGCAACGAGAGGATAGTATTAGTAGAGCTGC
TGGGTATGATGAGGGTCATTATGGAAGATACAGATTTTAAGCCGGATCTA
AAAACGCGCTCTCCGCCCGTTCACCGCTCCCTGTGAAAAGAAACACGACG
TCAAGCGCGTACTCTGGTGTTCATCGATCCCTCAATCGGCTATGTACCGA
ATCAATCTGAGAGGAAGAACAATATAGTGCAATGATGTCTGTGAACCTTT
TTCCTATTTCAACGTATCTCGCGAGCAGGCAGCGGACGTACTGAGCAAAC
GATTCGAAGCGCGTTTCGTGAAGCTCGGCGAGGCAGGAGCTGGCGTCGGA
CCAAGGCCCGCGCGAAGGGCAAGAGAAAATTGGGGGCGAAGGTTGCGGCG
GACGCTGCGTCGCCAACCGACGAGGATCGGTGCAAGCTTGCGCGGCAACT
GAGTCACGCTCGAATGGAAGACGTGACGGCGGCGGTCCACGAGATCGATC
GCCACTGCCCCGACGCGCTCGTGCGCAACGGCGACACGATCGAGGTCGAC
GTAGACCGCTTGGATGCGTGGACGTTCTGCTCCGTCGAGCGTGTCGTGGC
GCCTCAGGCAGCGATGCGGCGAGCGGTGCGGAGCACTGCGCGGCGGGCGC
GCAAGAAGCGACCGGCTACGCGGTACACTGGCAGTAACGACAGCAGCGCC
CCCCACGTTGAGAAGACGGCTCGGGGAGGGGATGGAGAT
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1051:180369..181457+

>mRNA_F-serratus_M_contig1051.545.1 ID=mRNA_F-serratus_M_contig1051.545.1|Name=mRNA_F-serratus_M_contig1051.545.1|organism=Fucus serratus male|type=CDS|length=852bp|location=Sequence derived from alignment at F-serratus_M_contig1051:180369..181457+ (Fucus serratus male)
ATGGCGCAGATAATCGACTCTCTGCTGGCCTCCGCAGACTCCTTCGCCTT
CCGAGAGCCTGTTGACTGGCGTGGCCTAGGGCTCCACGACTATCCCGTTA
TCATCACGAGACCCATGGACTTGGGAACGGTCAAGCTTCGCCTGCAGCAG
GGGGCTTACAGCGGCGCGGACGAGTTTGCGGCAGACGTCCGCCTCATTTG
GGATAACTGCAGAACCTACAACTGCGGAGGCGTTCCGCGCAAGCTGCATA
AGATGGCGCAGATAATCGACTCTCTGCTGGCCTCCGCAGACTCCTTCGCC
TTCCGAGAGCCTGTTGACTGGCGTGGCCTAGGGCTCCACGACTATCCCGT
TATCATCACGAGACCCATGGACTTGGGAACGGTCAAGCTTCGCCTGCAGC
AGGGGGCTTACAGCGGCGCGGACGAGTTTGCGGCAGACGTCCGCCTCATT
TGGGATAACTGCAGAACCTACAACTGCGGAGGCGTTCCGCGCAAGCTGCA
TAAGGCAGCGGACGTACTGAGCAAACGATTCGAAGCGCGTTTCGTGAAGC
TCGGCGAGGCAGGAGCTGGCGTCGGACCAAGGCCCGCGCGAAGGGCAAGA
GAAAATTGGGGGCGAAGGTTGCGGCGGACGCTGCGTCGCCAACCGACGAG
GATCGGTGCAAGCTTGCGCGGCAACTGAGCAGCGGACGTACTGAGCAAAC
GATTCGAAGCGCGTTTCGTGAAGCTCGGCGAGGCAGGAGCTGGCGTCGGA
CCAAGGCCCGCGCGAAGGGCAAGAGAAAATTGGGGGCGAAGGTTGCGGCG
GACGCTGCGTCGCCAACCGACGAGGATCGGTGCAAGCTTGCGCGGCAACT
GA
back to top