mRNA_F-serratus_M_contig1051.545.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1051.545.1
Unique NamemRNA_F-serratus_M_contig1051.545.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1051.545.1 vs. uniprot
Match: A0A448ZMK4_9STRA (Bromo domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZMK4_9STRA)

HSP 1 Score: 103 bits (257), Expect = 4.260e-23
Identity = 51/100 (51.00%), Postives = 67/100 (67.00%), Query Frame = 1
Query:    1 MAQIIDSLLASADSFAFREPVDWRGLGLHDYPVIITRPMDLGTVKLRLQQGAYSGADEFAADVRLIWDNCRTYNCGGVPRKLHKAADVLSKRFEARFVKL 300
            + +I++SLLA+ D   FREPVDWRGL L DYP +I   MDLGT+K RL++G YS A + A D+RL+W NC TYN  G    L   A   ++RFE R+ K+
Sbjct:   14 ITKIVNSLLANEDCAPFREPVDWRGLELFDYPQVIETMMDLGTIKRRLERGHYSTAHQVAEDIRLVWRNCMTYNADGSDFWL--LAKSYARRFEDRYRKI 111          
BLAST of mRNA_F-serratus_M_contig1051.545.1 vs. uniprot
Match: A0A1Z5KMF2_FISSO (Bromodomain-containing protein 2 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KMF2_FISSO)

HSP 1 Score: 103 bits (257), Expect = 5.090e-23
Identity = 53/108 (49.07%), Postives = 70/108 (64.81%), Query Frame = 1
Query:    1 MAQIIDSLLASADSFAFREPVDWRGLGLHDYPVIITRPMDLGTVKLRLQQGAYSGADEFAADVRLIWDNCRTYNCGGVPRKLHKAADVLSKRFEARFVKLGEAGAGVG 324
            M +I+++ LA  DS  FREPVDWRGL LHDYP II   MDLGT+K +L++  Y  A + A+D+RL+W NC TYN  G    L   A   S+RFE R+ ++ +A   VG
Sbjct:   14 MTKIVNAFLARPDSGPFREPVDWRGLELHDYPEIIKHMMDLGTIKRKLERNQYQTAAQVASDIRLVWSNCMTYNAEGSDFWL--LAKGFSRRFEDRYRRV-KADVDVG 118          
BLAST of mRNA_F-serratus_M_contig1051.545.1 vs. uniprot
Match: A0A448YXV5_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YXV5_9STRA)

HSP 1 Score: 102 bits (253), Expect = 5.920e-23
Identity = 47/100 (47.00%), Postives = 64/100 (64.00%), Query Frame = 1
Query:    1 MAQIIDSLLASADSFAFREPVDWRGLGLHDYPVIITRPMDLGTVKLRLQQGAYSGADEFAADVRLIWDNCRTYNCGGVPRKLHKAADVLSKRFEARFVKL 300
            M++I+ S++  +D+  FR PVDW+G+GL DYP +I +PMDLGTVK  +    Y    E A D+RL+W NC TYN  G     +  A  LSKRFE ++ KL
Sbjct:   12 MSKILQSMIQRSDTEPFRVPVDWKGMGLFDYPTLIKKPMDLGTVKRNINSRKYKSIPEAAEDIRLVWTNCMTYNQDG--SDFYILAKNLSKRFEEKYAKL 109          
BLAST of mRNA_F-serratus_M_contig1051.545.1 vs. uniprot
Match: A0A7S3PZ05_9STRA (Hypothetical protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PZ05_9STRA)

HSP 1 Score: 102 bits (253), Expect = 6.950e-23
Identity = 47/116 (40.52%), Postives = 71/116 (61.21%), Query Frame = 1
Query:    1 MAQIIDSLLASADSFAFREPVDWRGLGLHDYPVIITRPMDLGTVKLRLQQGAYSGADEFAADVRLIWDNCRTYNCGGVPRKLHKAADVLSKRFEARFVKL----------GEAGAG 318
            M +++  + +  +S  FR+ VDW  LGL+DYP I+ RPMDLG +K ++++  Y+  ++ A DVRL+W NC+TYN  G     +  AD LS +FE +F KL          G++GAG
Sbjct:    9 MGKLVQQIYSKGESEPFRDAVDWESLGLYDYPQIVKRPMDLGQIKRKIEKEEYASVNDAANDVRLVWQNCKTYNADG--SDFYNLADTLSTKFEDKFAKLLKELGLEAADGKSGAG 122          
BLAST of mRNA_F-serratus_M_contig1051.545.1 vs. uniprot
Match: W7TT69_9STRA (Bromodomain containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TT69_9STRA)

HSP 1 Score: 102 bits (253), Expect = 7.770e-23
Identity = 49/100 (49.00%), Postives = 68/100 (68.00%), Query Frame = 1
Query:    1 MAQIIDSLLASADSFAFREPVDWRGLGLHDYPVIITRPMDLGTVKLRLQQGAYSGADEFAADVRLIWDNCRTYNCGGVPRKLHKAADVLSKRFEARFVKL 300
            M Q++  L    D  AF EPVDW+ LGL DYP++I+ PMDLGT+K RL+ G Y+   + A DVRL+W+NC+TYN  G    L+K AD L+ +FE ++ K+
Sbjct:    9 MYQLVQWLSNQKDVDAFLEPVDWKTLGLTDYPLVISTPMDLGTIKGRLESGHYTKHAQVAEDVRLVWNNCKTYNQEG--SYLYKIADKLAGKFEEKYSKI 106          
BLAST of mRNA_F-serratus_M_contig1051.545.1 vs. uniprot
Match: A0A7R9VVT0_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VVT0_9STRA)

HSP 1 Score: 101 bits (251), Expect = 1.270e-22
Identity = 48/100 (48.00%), Postives = 63/100 (63.00%), Query Frame = 1
Query:    1 MAQIIDSLLASADSFAFREPVDWRGLGLHDYPVIITRPMDLGTVKLRLQQGAYSGADEFAADVRLIWDNCRTYNCGGVPRKLHKAADVLSKRFEARFVKL 300
            MA+++  + A +D+  FREPVDW+ LGL DYP II +PMDLG VK +++ G Y    + A DVRLIW NC  YN  G        A  +SK+FE +F KL
Sbjct:   11 MAKLVAQIYAKSDAEPFREPVDWKSLGLFDYPQIIKKPMDLGQVKRKIETGKYGAIHDAAEDVRLIWKNCMQYNADG--SDFFILAQNMSKKFEDKFAKL 108          
BLAST of mRNA_F-serratus_M_contig1051.545.1 vs. uniprot
Match: A0A7S0DN66_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DN66_9EUKA)

HSP 1 Score: 101 bits (251), Expect = 2.020e-22
Identity = 49/102 (48.04%), Postives = 70/102 (68.63%), Query Frame = 1
Query:    7 QIIDSLLASADSFAFREPVDWRGLGLHDYPVIITRPMDLGTVKLRLQQGAYSGADEFAADVRLIWDNCRTYNCGGVPRK-LHKAADVLSKRFEARFVKLGEA 309
            +I+ S+ A +D+  F EPVDW+   L DYP+II RPMDLGT++ R+  G YS A+EFA DVRL+W N + YN   +P   ++K ++ LS+ FE RF KL ++
Sbjct:   27 EILKSVQAKSDAHPFLEPVDWKRFDLPDYPIIIKRPMDLGTIEKRIFDGFYSTANEFALDVRLVWSNAQKYN---LPMSDIYKMSESLSRFFERRFAKLAKS 125          
BLAST of mRNA_F-serratus_M_contig1051.545.1 vs. uniprot
Match: B8BSQ7_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BSQ7_THAPS)

HSP 1 Score: 100 bits (249), Expect = 2.290e-22
Identity = 46/102 (45.10%), Postives = 65/102 (63.73%), Query Frame = 1
Query:    1 MAQIIDSLLASADSFAFREPVDWRGLGLHDYPVIITRPMDLGTVKLRLQQGAYSGADEFAADVRLIWDNCRTYNCGGVPRKLHKAADVLSKRFEARFVKLGE 306
            M++++    A AD+  FREPVD++ LGL DYP+++ +PMDLG VK +L +  Y    + A DVRLIW NC TYN  G     +  A  ++K+FE +F KL E
Sbjct:    8 MSKLVSQFYAKADAEPFREPVDYKALGLVDYPLVVKKPMDLGQVKKKLNESKYKSIHDAADDVRLIWKNCMTYNADG--SDFYLLAQTMAKKFEEKFAKLVE 107          
BLAST of mRNA_F-serratus_M_contig1051.545.1 vs. uniprot
Match: A0A7R9UFP7_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UFP7_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 5.260e-22
Identity = 47/105 (44.76%), Postives = 67/105 (63.81%), Query Frame = 1
Query:    1 MAQIIDSLLASADSFAFREPVDWRGLGLHDYPVIITRPMDLGTVKLRLQQGAYSGADEFAADVRLIWDNCRTYNCGGVPRKLHKAADVLSKRFEARFVKLGEAGA 315
            M  ++D L    +S+ F EPV+WR +GL+DYP II  PMDLGTV+ +L    Y  A E A D+RL+W NC TYN  G   + +K A+  SK+FE++F  + ++ A
Sbjct:   11 MMGVLDFLDKQTESYIFSEPVNWREMGLYDYPEIIKNPMDLGTVRQKLVNKEYRNATECAEDIRLVWRNCMTYNQDG--SEFYKIAEKFSKKFESKFAPVAKSEA 113          
BLAST of mRNA_F-serratus_M_contig1051.545.1 vs. uniprot
Match: A0A7S1FUF8_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FUF8_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 7.620e-22
Identity = 46/98 (46.94%), Postives = 62/98 (63.27%), Query Frame = 1
Query:    7 QIIDSLLASADSFAFREPVDWRGLGLHDYPVIITRPMDLGTVKLRLQQGAYSGADEFAADVRLIWDNCRTYNCGGVPRKLHKAADVLSKRFEARFVKL 300
            +++ SLL+  DS  FREPVDWR + L DYP I+ + MDLGT+K +L++G Y    +  ADVRL+W NC  YN  G     +  A+  S RFE R+ KL
Sbjct:   63 KLVSSLLSRNDSAPFREPVDWRAMELWDYPKIVRKMMDLGTIKRKLERGEYRTVQDVVADVRLVWKNCMLYNADG--SDFYLLAEGFSSRFEERWKKL 158          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1051.545.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A448ZMK4_9STRA4.260e-2351.00Bromo domain-containing protein n=1 Tax=Pseudo-nit... [more]
A0A1Z5KMF2_FISSO5.090e-2349.07Bromodomain-containing protein 2 n=2 Tax=Fistulife... [more]
A0A448YXV5_9STRA5.920e-2347.00Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S3PZ05_9STRA6.950e-2340.52Hypothetical protein n=2 Tax=Chaetoceros debilis T... [more]
W7TT69_9STRA7.770e-2349.00Bromodomain containing protein n=3 Tax=Monodopsida... [more]
A0A7R9VVT0_9STRA1.270e-2248.00Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S0DN66_9EUKA2.020e-2248.04Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
B8BSQ7_THAPS2.290e-2245.10Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7R9UFP7_9STRA5.260e-2244.76Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1FUF8_9STRA7.620e-2246.94Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1051contigF-serratus_M_contig1051:180369..181457 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score162.9
Seed ortholog evalue1.1e-37
Seed eggNOG ortholog2880.D8LBQ8
KEGG koko:K11724
Hectar predicted targeting categoryother localisation
EggNOG free text desc.acetylation-dependent protein binding
EggNOG OGsCOG5076@1,KOG1474@2759
COG Functional cat.BK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01001,ko03036
Exons2
Model size713
Cds size426
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1051.545.1prot_F-serratus_M_contig1051.545.1Fucus serratus malepolypeptideF-serratus_M_contig1051 180369..181170 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928884.5720856-CDS-F-serratus_M_contig1051:180368..1806201622928884.5720856-CDS-F-serratus_M_contig1051:180368..180620Fucus serratus maleCDSF-serratus_M_contig1051 180369..180620 +
1690962614.6458898-CDS-F-serratus_M_contig1051:180368..1806201690962614.6458898-CDS-F-serratus_M_contig1051:180368..180620Fucus serratus maleCDSF-serratus_M_contig1051 180369..180620 +
1622928884.582434-CDS-F-serratus_M_contig1051:180996..1811701622928884.582434-CDS-F-serratus_M_contig1051:180996..181170Fucus serratus maleCDSF-serratus_M_contig1051 180997..181170 +
1690962614.6573803-CDS-F-serratus_M_contig1051:180996..1811701690962614.6573803-CDS-F-serratus_M_contig1051:180996..181170Fucus serratus maleCDSF-serratus_M_contig1051 180997..181170 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928884.597021-UTR-F-serratus_M_contig1051:181170..1814571622928884.597021-UTR-F-serratus_M_contig1051:181170..181457Fucus serratus maleUTRF-serratus_M_contig1051 181171..181457 +
1690962614.6663737-UTR-F-serratus_M_contig1051:181170..1814571690962614.6663737-UTR-F-serratus_M_contig1051:181170..181457Fucus serratus maleUTRF-serratus_M_contig1051 181171..181457 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1051.545.1

>prot_F-serratus_M_contig1051.545.1 ID=prot_F-serratus_M_contig1051.545.1|Name=mRNA_F-serratus_M_contig1051.545.1|organism=Fucus serratus male|type=polypeptide|length=142bp
MAQIIDSLLASADSFAFREPVDWRGLGLHDYPVIITRPMDLGTVKLRLQQ
GAYSGADEFAADVRLIWDNCRTYNCGGVPRKLHKAADVLSKRFEARFVKL
GEAGAGVGPRPARRARENWGRRLRRTLRRQPTRIGASLRGN*
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mRNA from alignment at F-serratus_M_contig1051:180369..181457+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1051.545.1 ID=mRNA_F-serratus_M_contig1051.545.1|Name=mRNA_F-serratus_M_contig1051.545.1|organism=Fucus serratus male|type=mRNA|length=1089bp|location=Sequence derived from alignment at F-serratus_M_contig1051:180369..181457+ (Fucus serratus male)
ATGGCGCAGATAATCGACTCTCTGCTGGCCTCCGCAGACTCCTTCGCCTT CCGAGAGCCTGTTGACTGGCGTGGCCTAGGGCTCCACGACTATCCCGTTA TCATCACGAGACCCATGGACTTGGGAACGGTCAAGCTTCGCCTGCAGCAG GGGGCTTACAGCGGCGCGGACGAGTTTGCGGCAGACGTCCGCCTCATTTG GGATAACTGCAGAACCTACAACTGCGGAGGCGTTCCGCGCAAGCTGCATA AGGTACTCTATCTCTGTATGCTCTACTTAGTCCATATTTCCACGTATTAT ATGGCTGGCGTGGTTACTGCAACGGAGTCCCCCTTTCTTTTTTTGAGAGC AGGGAGGAGCCCGATCTTGCGCAACGAGAGGATAGTATTAGTAGAGCTGC TGGGTATGATGAGGGTCATTATGGAAGATACAGATTTTAAGCCGGATCTA AAAACGCGCTCTCCGCCCGTTCACCGCTCCCTGTGAAAAGAAACACGACG TCAAGCGCGTACTCTGGTGTTCATCGATCCCTCAATCGGCTATGTACCGA ATCAATCTGAGAGGAAGAACAATATAGTGCAATGATGTCTGTGAACCTTT TTCCTATTTCAACGTATCTCGCGAGCAGGCAGCGGACGTACTGAGCAAAC GATTCGAAGCGCGTTTCGTGAAGCTCGGCGAGGCAGGAGCTGGCGTCGGA CCAAGGCCCGCGCGAAGGGCAAGAGAAAATTGGGGGCGAAGGTTGCGGCG GACGCTGCGTCGCCAACCGACGAGGATCGGTGCAAGCTTGCGCGGCAACT GAGTCACGCTCGAATGGAAGACGTGACGGCGGCGGTCCACGAGATCGATC GCCACTGCCCCGACGCGCTCGTGCGCAACGGCGACACGATCGAGGTCGAC GTAGACCGCTTGGATGCGTGGACGTTCTGCTCCGTCGAGCGTGTCGTGGC GCCTCAGGCAGCGATGCGGCGAGCGGTGCGGAGCACTGCGCGGCGGGCGC GCAAGAAGCGACCGGCTACGCGGTACACTGGCAGTAACGACAGCAGCGCC CCCCACGTTGAGAAGACGGCTCGGGGAGGGGATGGAGAT
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Coding sequence (CDS) from alignment at F-serratus_M_contig1051:180369..181457+

>mRNA_F-serratus_M_contig1051.545.1 ID=mRNA_F-serratus_M_contig1051.545.1|Name=mRNA_F-serratus_M_contig1051.545.1|organism=Fucus serratus male|type=CDS|length=852bp|location=Sequence derived from alignment at F-serratus_M_contig1051:180369..181457+ (Fucus serratus male)
ATGGCGCAGATAATCGACTCTCTGCTGGCCTCCGCAGACTCCTTCGCCTT
CCGAGAGCCTGTTGACTGGCGTGGCCTAGGGCTCCACGACTATCCCGTTA
TCATCACGAGACCCATGGACTTGGGAACGGTCAAGCTTCGCCTGCAGCAG
GGGGCTTACAGCGGCGCGGACGAGTTTGCGGCAGACGTCCGCCTCATTTG
GGATAACTGCAGAACCTACAACTGCGGAGGCGTTCCGCGCAAGCTGCATA
AGATGGCGCAGATAATCGACTCTCTGCTGGCCTCCGCAGACTCCTTCGCC
TTCCGAGAGCCTGTTGACTGGCGTGGCCTAGGGCTCCACGACTATCCCGT
TATCATCACGAGACCCATGGACTTGGGAACGGTCAAGCTTCGCCTGCAGC
AGGGGGCTTACAGCGGCGCGGACGAGTTTGCGGCAGACGTCCGCCTCATT
TGGGATAACTGCAGAACCTACAACTGCGGAGGCGTTCCGCGCAAGCTGCA
TAAGGCAGCGGACGTACTGAGCAAACGATTCGAAGCGCGTTTCGTGAAGC
TCGGCGAGGCAGGAGCTGGCGTCGGACCAAGGCCCGCGCGAAGGGCAAGA
GAAAATTGGGGGCGAAGGTTGCGGCGGACGCTGCGTCGCCAACCGACGAG
GATCGGTGCAAGCTTGCGCGGCAACTGAGCAGCGGACGTACTGAGCAAAC
GATTCGAAGCGCGTTTCGTGAAGCTCGGCGAGGCAGGAGCTGGCGTCGGA
CCAAGGCCCGCGCGAAGGGCAAGAGAAAATTGGGGGCGAAGGTTGCGGCG
GACGCTGCGTCGCCAACCGACGAGGATCGGTGCAAGCTTGCGCGGCAACT
GA
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