mRNA_F-serratus_M_contig1051.545.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1051.545.1
Unique NamemRNA_F-serratus_M_contig1051.545.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1051.545.1 vs. uniprot
Match: A0A6H5K301_9PHAE (Bromo domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K301_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 1.040e-42
Identity = 77/102 (75.49%), Postives = 83/102 (81.37%), Query Frame = 1
Query:   10 IIDSLLASADSFAFREPVDWRGLGLHDYPVIITRPMDLGTVKLRLQQGAYSGADEFAADVRLIWDNCRTYNCGGVPRKLHKA-----ADVLSKRFEARFVKL 300
            +IDSLL SADS AFREPVDWRGLGLHDYP +I RPMDLGTVKLRL++GAY  A+  AADVRLIWDNCRTYN GGVPR LHKA     AD LSKRFE R  K+
Sbjct:   26 LIDSLLGSADSEAFREPVDWRGLGLHDYPNLIKRPMDLGTVKLRLERGAYPTAEACAADVRLIWDNCRTYNTGGVPRDLHKASEKLAADTLSKRFETRLAKI 127          
BLAST of mRNA_F-serratus_M_contig1051.545.1 vs. uniprot
Match: A0A7S2EKB9_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EKB9_TRICV)

HSP 1 Score: 112 bits (279), Expect = 9.010e-28
Identity = 55/100 (55.00%), Postives = 70/100 (70.00%), Query Frame = 1
Query:    1 MAQIIDSLLASADSFAFREPVDWRGLGLHDYPVIITRPMDLGTVKLRLQQGAYSGADEFAADVRLIWDNCRTYNCGGVPRKLHKAADVLSKRFEARFVKL 300
            M +I++S+LA  DS  FREPVDWRGL L+DYP II + MDLGTVK +L++G Y  A E A D+RLIW NC+TYN  G    L   A+  S+RFE R+ K+
Sbjct:   29 MTKIVNSILARGDSGPFREPVDWRGLELYDYPKIIKKMMDLGTVKRKLERGQYQTAHECAEDIRLIWTNCKTYNADGSDFFL--LAESFSRRFEERYKKV 126          
BLAST of mRNA_F-serratus_M_contig1051.545.1 vs. uniprot
Match: A0A8J2WSU6_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WSU6_9STRA)

HSP 1 Score: 109 bits (273), Expect = 6.380e-26
Identity = 51/100 (51.00%), Postives = 68/100 (68.00%), Query Frame = 1
Query:    1 MAQIIDSLLASADSFAFREPVDWRGLGLHDYPVIITRPMDLGTVKLRLQQGAYSGADEFAADVRLIWDNCRTYNCGGVPRKLHKAADVLSKRFEARFVKL 300
            M +II++L+   DS  FREPVDWRGLGL+DYP +I +PMDL TVK  +++  Y   ++ A D+RLIW+NC+ YN  G     +  AD  SKRFE RF K+
Sbjct:   10 MTKIINTLMQRPDSVPFREPVDWRGLGLYDYPQVIAKPMDLTTVKQTIERQGYKSVNDCADDIRLIWNNCKKYNQDG--SDFYNLADGFSKRFEERFSKV 107          
BLAST of mRNA_F-serratus_M_contig1051.545.1 vs. uniprot
Match: A0A7S2UQ34_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UQ34_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.980e-25
Identity = 50/106 (47.17%), Postives = 68/106 (64.15%), Query Frame = 1
Query:    1 MAQIIDSLLASADSFAFREPVDWRGLGLHDYPVIITRPMDLGTVKLRLQQGAYSGADEFAADVRLIWDNCRTYNCGGVPRKLHKAADVLSKRFEARFVKLGEAGAG 318
            +A+++  + A  D+  FREPV+W+ LGL DYP +I RPMDLG +K  L++  YS   E AAD++L+W NC TYN  G     +K A  LS  FEARF K+ + G G
Sbjct:   10 IAKVLAQMYAKPDAEPFREPVEWKALGLFDYPQVIKRPMDLGHIKRNLEKNKYSTVHEVAADIKLVWKNCMTYNADG--SDFYKLAKKLSNSFEARFAKIAKDGGG 113          
BLAST of mRNA_F-serratus_M_contig1051.545.1 vs. uniprot
Match: B8BY87_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BY87_THAPS)

HSP 1 Score: 110 bits (276), Expect = 2.060e-25
Identity = 52/100 (52.00%), Postives = 68/100 (68.00%), Query Frame = 1
Query:    1 MAQIIDSLLASADSFAFREPVDWRGLGLHDYPVIITRPMDLGTVKLRLQQGAYSGADEFAADVRLIWDNCRTYNCGGVPRKLHKAADVLSKRFEARFVKL 300
            M +I+D+LLA ADS  FREPVDW+G+ L+DYP ++ R MDLGTVK +L  G Y+ A E A DVR +W NC  YN  G     +  A++ S+RFE RF K+
Sbjct:   22 MKKIVDNLLARADSVPFREPVDWKGMELYDYPKVVKRMMDLGTVKKKLTGGKYADASECADDVRQVWKNCMLYNADG--SDFYALAELFSRRFEERFQKI 119          
BLAST of mRNA_F-serratus_M_contig1051.545.1 vs. uniprot
Match: A0A7S0BZA1_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BZA1_9STRA)

HSP 1 Score: 106 bits (264), Expect = 2.730e-25
Identity = 53/96 (55.21%), Postives = 66/96 (68.75%), Query Frame = 1
Query:    1 MAQIIDSLLASADSFAFREPVDWRGLGLHDYPVIITRPMDLGTVKLRLQQGAYSGADEFAADVRLIWDNCRTYNCGGVPRKLHKAADVLSKRFEAR 288
            MA++++SLLA  D   FREPVDWRGL L DYP +I + MDLGTVK +L++G YS   E A D+RL+W NC+TYN  G    L   A+  SKRFE R
Sbjct:   48 MAKLVNSLLARVDCGPFREPVDWRGLELWDYPKVIKKMMDLGTVKRKLERGQYSTPAECAVDIRLVWTNCKTYNADGSDFFL--LAESFSKRFEDR 141          
BLAST of mRNA_F-serratus_M_contig1051.545.1 vs. uniprot
Match: A0A7S2KYB1_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KYB1_9STRA)

HSP 1 Score: 105 bits (263), Expect = 8.620e-24
Identity = 52/100 (52.00%), Postives = 67/100 (67.00%), Query Frame = 1
Query:    1 MAQIIDSLLASADSFAFREPVDWRGLGLHDYPVIITRPMDLGTVKLRLQQGAYSGADEFAADVRLIWDNCRTYNCGGVPRKLHKAADVLSKRFEARFVKL 300
            MA+++++L A AD   FREPVDW+ L L+DYP II + MDLGT+K +L +  YS A E A DVRL+W NC TYN  G     ++  +  SKRFE RF KL
Sbjct:   19 MAKMVNNLSARADCEPFREPVDWKALELYDYPKIIKKMMDLGTIKRKLDKEKYSDAAECADDVRLVWKNCMTYNADG--SDFYRLGESYSKRFEERFQKL 116          
BLAST of mRNA_F-serratus_M_contig1051.545.1 vs. uniprot
Match: A0A7S3JU45_9STRA (Hypothetical protein n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JU45_9STRA)

HSP 1 Score: 103 bits (256), Expect = 2.090e-23
Identity = 47/100 (47.00%), Postives = 65/100 (65.00%), Query Frame = 1
Query:    1 MAQIIDSLLASADSFAFREPVDWRGLGLHDYPVIITRPMDLGTVKLRLQQGAYSGADEFAADVRLIWDNCRTYNCGGVPRKLHKAADVLSKRFEARFVKL 300
            M +I+D L+   D+  F EPVDW+GLGL DYP +I +PMDLGTVK ++++  Y+     A D+RL+W NC+ YN  G        A+ LSKRFE +F K+
Sbjct:    4 MKKIVDKLMKRQDAVPFLEPVDWQGLGLVDYPKMIKKPMDLGTVKKKIEENEYASVHACAEDIRLVWSNCKKYNQDG--SDFFNLAESLSKRFEDQFAKV 101          
BLAST of mRNA_F-serratus_M_contig1051.545.1 vs. uniprot
Match: A0A7S2UZN8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZN8_9STRA)

HSP 1 Score: 103 bits (257), Expect = 2.520e-23
Identity = 47/100 (47.00%), Postives = 66/100 (66.00%), Query Frame = 1
Query:    1 MAQIIDSLLASADSFAFREPVDWRGLGLHDYPVIITRPMDLGTVKLRLQQGAYSGADEFAADVRLIWDNCRTYNCGGVPRKLHKAADVLSKRFEARFVKL 300
            M +I+  L+   D+  FREPVDWR L + DYP I+ RPMDLGT+K +L+ G Y    E AAD+RL+W+NC  YN  G     ++ A+ LSK+FE ++ K+
Sbjct:   44 MKKIVSYLMTRQDAVPFREPVDWRQLQIFDYPQIVKRPMDLGTIKKKLENGEYRTPAECAADIRLVWENCMIYNQDG--SDYYRLAEKLSKKFEDKYAKV 141          
BLAST of mRNA_F-serratus_M_contig1051.545.1 vs. uniprot
Match: A0A7S2PE54_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PE54_9STRA)

HSP 1 Score: 103 bits (258), Expect = 3.110e-23
Identity = 50/100 (50.00%), Postives = 67/100 (67.00%), Query Frame = 1
Query:    1 MAQIIDSLLASADSFAFREPVDWRGLGLHDYPVIITRPMDLGTVKLRLQQGAYSGADEFAADVRLIWDNCRTYNCGGVPRKLHKAADVLSKRFEARFVKL 300
            M++++ S++  +D+  FREPV+WR L L DYP II RPMDLGTVK +L+   Y  A+E A D+RLIW NC TYN  G     +  A  LS++FE RF K+
Sbjct:   17 MSKLVSSMMTKSDTAPFREPVNWRELELWDYPKIIKRPMDLGTVKRKLESTQYETANECAEDIRLIWSNCMTYNQEG--SDFYLLAQALSRKFEDRFRKV 114          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1051.545.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K301_9PHAE1.040e-4275.49Bromo domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A7S2EKB9_TRICV9.010e-2855.00Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A8J2WSU6_9STRA6.380e-2651.00Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S2UQ34_9STRA1.980e-2547.17Hypothetical protein n=1 Tax=Attheya septentrional... [more]
B8BY87_THAPS2.060e-2552.00Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S0BZA1_9STRA2.730e-2555.21Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S2KYB1_9STRA8.620e-2452.00Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S3JU45_9STRA2.090e-2347.00Hypothetical protein n=2 Tax=Aureoumbra lagunensis... [more]
A0A7S2UZN8_9STRA2.520e-2347.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2PE54_9STRA3.110e-2350.00Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1051contigF-serratus_M_contig1051:180369..181457 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score162.9
Seed ortholog evalue1.1e-37
Seed eggNOG ortholog2880.D8LBQ8
KEGG koko:K11724
Hectar predicted targeting categoryother localisation
EggNOG free text desc.acetylation-dependent protein binding
EggNOG OGsCOG5076@1,KOG1474@2759
COG Functional cat.BK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01001,ko03036
Exons2
Model size713
Cds size426
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1051.545.1prot_F-serratus_M_contig1051.545.1Fucus serratus malepolypeptideF-serratus_M_contig1051 180369..181170 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928884.5720856-CDS-F-serratus_M_contig1051:180368..1806201622928884.5720856-CDS-F-serratus_M_contig1051:180368..180620Fucus serratus maleCDSF-serratus_M_contig1051 180369..180620 +
1690962614.6458898-CDS-F-serratus_M_contig1051:180368..1806201690962614.6458898-CDS-F-serratus_M_contig1051:180368..180620Fucus serratus maleCDSF-serratus_M_contig1051 180369..180620 +
1622928884.582434-CDS-F-serratus_M_contig1051:180996..1811701622928884.582434-CDS-F-serratus_M_contig1051:180996..181170Fucus serratus maleCDSF-serratus_M_contig1051 180997..181170 +
1690962614.6573803-CDS-F-serratus_M_contig1051:180996..1811701690962614.6573803-CDS-F-serratus_M_contig1051:180996..181170Fucus serratus maleCDSF-serratus_M_contig1051 180997..181170 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928884.597021-UTR-F-serratus_M_contig1051:181170..1814571622928884.597021-UTR-F-serratus_M_contig1051:181170..181457Fucus serratus maleUTRF-serratus_M_contig1051 181171..181457 +
1690962614.6663737-UTR-F-serratus_M_contig1051:181170..1814571690962614.6663737-UTR-F-serratus_M_contig1051:181170..181457Fucus serratus maleUTRF-serratus_M_contig1051 181171..181457 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1051.545.1

>prot_F-serratus_M_contig1051.545.1 ID=prot_F-serratus_M_contig1051.545.1|Name=mRNA_F-serratus_M_contig1051.545.1|organism=Fucus serratus male|type=polypeptide|length=142bp
MAQIIDSLLASADSFAFREPVDWRGLGLHDYPVIITRPMDLGTVKLRLQQ
GAYSGADEFAADVRLIWDNCRTYNCGGVPRKLHKAADVLSKRFEARFVKL
GEAGAGVGPRPARRARENWGRRLRRTLRRQPTRIGASLRGN*
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mRNA from alignment at F-serratus_M_contig1051:180369..181457+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1051.545.1 ID=mRNA_F-serratus_M_contig1051.545.1|Name=mRNA_F-serratus_M_contig1051.545.1|organism=Fucus serratus male|type=mRNA|length=1089bp|location=Sequence derived from alignment at F-serratus_M_contig1051:180369..181457+ (Fucus serratus male)
ATGGCGCAGATAATCGACTCTCTGCTGGCCTCCGCAGACTCCTTCGCCTT CCGAGAGCCTGTTGACTGGCGTGGCCTAGGGCTCCACGACTATCCCGTTA TCATCACGAGACCCATGGACTTGGGAACGGTCAAGCTTCGCCTGCAGCAG GGGGCTTACAGCGGCGCGGACGAGTTTGCGGCAGACGTCCGCCTCATTTG GGATAACTGCAGAACCTACAACTGCGGAGGCGTTCCGCGCAAGCTGCATA AGGTACTCTATCTCTGTATGCTCTACTTAGTCCATATTTCCACGTATTAT ATGGCTGGCGTGGTTACTGCAACGGAGTCCCCCTTTCTTTTTTTGAGAGC AGGGAGGAGCCCGATCTTGCGCAACGAGAGGATAGTATTAGTAGAGCTGC TGGGTATGATGAGGGTCATTATGGAAGATACAGATTTTAAGCCGGATCTA AAAACGCGCTCTCCGCCCGTTCACCGCTCCCTGTGAAAAGAAACACGACG TCAAGCGCGTACTCTGGTGTTCATCGATCCCTCAATCGGCTATGTACCGA ATCAATCTGAGAGGAAGAACAATATAGTGCAATGATGTCTGTGAACCTTT TTCCTATTTCAACGTATCTCGCGAGCAGGCAGCGGACGTACTGAGCAAAC GATTCGAAGCGCGTTTCGTGAAGCTCGGCGAGGCAGGAGCTGGCGTCGGA CCAAGGCCCGCGCGAAGGGCAAGAGAAAATTGGGGGCGAAGGTTGCGGCG GACGCTGCGTCGCCAACCGACGAGGATCGGTGCAAGCTTGCGCGGCAACT GAGTCACGCTCGAATGGAAGACGTGACGGCGGCGGTCCACGAGATCGATC GCCACTGCCCCGACGCGCTCGTGCGCAACGGCGACACGATCGAGGTCGAC GTAGACCGCTTGGATGCGTGGACGTTCTGCTCCGTCGAGCGTGTCGTGGC GCCTCAGGCAGCGATGCGGCGAGCGGTGCGGAGCACTGCGCGGCGGGCGC GCAAGAAGCGACCGGCTACGCGGTACACTGGCAGTAACGACAGCAGCGCC CCCCACGTTGAGAAGACGGCTCGGGGAGGGGATGGAGAT
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Coding sequence (CDS) from alignment at F-serratus_M_contig1051:180369..181457+

>mRNA_F-serratus_M_contig1051.545.1 ID=mRNA_F-serratus_M_contig1051.545.1|Name=mRNA_F-serratus_M_contig1051.545.1|organism=Fucus serratus male|type=CDS|length=852bp|location=Sequence derived from alignment at F-serratus_M_contig1051:180369..181457+ (Fucus serratus male)
ATGGCGCAGATAATCGACTCTCTGCTGGCCTCCGCAGACTCCTTCGCCTT
CCGAGAGCCTGTTGACTGGCGTGGCCTAGGGCTCCACGACTATCCCGTTA
TCATCACGAGACCCATGGACTTGGGAACGGTCAAGCTTCGCCTGCAGCAG
GGGGCTTACAGCGGCGCGGACGAGTTTGCGGCAGACGTCCGCCTCATTTG
GGATAACTGCAGAACCTACAACTGCGGAGGCGTTCCGCGCAAGCTGCATA
AGATGGCGCAGATAATCGACTCTCTGCTGGCCTCCGCAGACTCCTTCGCC
TTCCGAGAGCCTGTTGACTGGCGTGGCCTAGGGCTCCACGACTATCCCGT
TATCATCACGAGACCCATGGACTTGGGAACGGTCAAGCTTCGCCTGCAGC
AGGGGGCTTACAGCGGCGCGGACGAGTTTGCGGCAGACGTCCGCCTCATT
TGGGATAACTGCAGAACCTACAACTGCGGAGGCGTTCCGCGCAAGCTGCA
TAAGGCAGCGGACGTACTGAGCAAACGATTCGAAGCGCGTTTCGTGAAGC
TCGGCGAGGCAGGAGCTGGCGTCGGACCAAGGCCCGCGCGAAGGGCAAGA
GAAAATTGGGGGCGAAGGTTGCGGCGGACGCTGCGTCGCCAACCGACGAG
GATCGGTGCAAGCTTGCGCGGCAACTGAGCAGCGGACGTACTGAGCAAAC
GATTCGAAGCGCGTTTCGTGAAGCTCGGCGAGGCAGGAGCTGGCGTCGGA
CCAAGGCCCGCGCGAAGGGCAAGAGAAAATTGGGGGCGAAGGTTGCGGCG
GACGCTGCGTCGCCAACCGACGAGGATCGGTGCAAGCTTGCGCGGCAACT
GA
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