mRNA_F-serratus_M_contig1051.542.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1051.542.1
Unique NamemRNA_F-serratus_M_contig1051.542.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1051.542.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1051contigF-serratus_M_contig1051:129707..130009 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size304
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928882.0687516-CDS-F-serratus_M_contig1051:129706..1300091622928882.0687516-CDS-F-serratus_M_contig1051:129706..130009Fucus serratus maleCDSF-serratus_M_contig1051 129707..130009 +
1690962613.736643-CDS-F-serratus_M_contig1051:129706..1300091690962613.736643-CDS-F-serratus_M_contig1051:129706..130009Fucus serratus maleCDSF-serratus_M_contig1051 129707..130009 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1051.542.1prot_F-serratus_M_contig1051.542.1Fucus serratus malepolypeptideF-serratus_M_contig1051 129707..130009 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1051.542.1

>prot_F-serratus_M_contig1051.542.1 ID=prot_F-serratus_M_contig1051.542.1|Name=mRNA_F-serratus_M_contig1051.542.1|organism=Fucus serratus male|type=polypeptide|length=101bp
ALLALGWCSDDALWAPSTSGPFHTVLFAVLSVGSSAVGTSPTSAPLAAPS
TGQTMYLLSSGRQSWGSLSGDLQIIQVDLSPAVAQIAQSSRSLGRWFLTH
W
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mRNA from alignment at F-serratus_M_contig1051:129707..130009+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1051.542.1 ID=mRNA_F-serratus_M_contig1051.542.1|Name=mRNA_F-serratus_M_contig1051.542.1|organism=Fucus serratus male|type=mRNA|length=303bp|location=Sequence derived from alignment at F-serratus_M_contig1051:129707..130009+ (Fucus serratus male)
GCTCTTCTAGCTCTCGGCTGGTGCTCTGATGACGCTCTCTGGGCTCCTTC
GACCAGTGGCCCCTTTCACACTGTACTCTTCGCAGTGCTCTCGGTTGGTT
CCTCAGCCGTTGGTACTTCACCTACCAGCGCTCCTCTCGCGGCGCCGTCG
ACCGGGCAGACGATGTATTTGCTCTCTTCTGGTAGGCAATCGTGGGGTTC
CCTTTCGGGTGACCTCCAAATAATCCAGGTAGACCTTTCTCCGGCTGTTG
CTCAGATTGCGCAGTCCTCGCGCTCCCTCGGCCGGTGGTTCCTTACACAC
TGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1051:129707..130009+

>mRNA_F-serratus_M_contig1051.542.1 ID=mRNA_F-serratus_M_contig1051.542.1|Name=mRNA_F-serratus_M_contig1051.542.1|organism=Fucus serratus male|type=CDS|length=606bp|location=Sequence derived from alignment at F-serratus_M_contig1051:129707..130009+ (Fucus serratus male)
GCTCTTCTAGCTCTCGGCTGGTGCTCTGATGACGCTCTCTGGGCTCCTTC
GACCAGTGGCCCCTTTCACACTGTACTCTTCGCAGTGCTCTCGGTTGGTT
CCTCAGCCGTTGGTACTTCACCTACCAGCGCTCCTCTCGCGGCGCCGTCG
ACCGGGCAGACGATGTATTTGCTCTCTTCTGGTAGGCAATCGTGGGGTTC
CCTTTCGGGTGACCTCCAAATAATCCAGGTAGACCTTTCTCCGGCTGTTG
CTCAGATTGCGCAGTCCTCGCGCTCCCTCGGCCGGTGGTTCCTTACACAC
TGGGCTCTTCTAGCTCTCGGCTGGTGCTCTGATGACGCTCTCTGGGCTCC
TTCGACCAGTGGCCCCTTTCACACTGTACTCTTCGCAGTGCTCTCGGTTG
GTTCCTCAGCCGTTGGTACTTCACCTACCAGCGCTCCTCTCGCGGCGCCG
TCGACCGGGCAGACGATGTATTTGCTCTCTTCTGGTAGGCAATCGTGGGG
TTCCCTTTCGGGTGACCTCCAAATAATCCAGGTAGACCTTTCTCCGGCTG
TTGCTCAGATTGCGCAGTCCTCGCGCTCCCTCGGCCGGTGGTTCCTTACA
CACTGG
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