mRNA_F-serratus_M_contig1051.541.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1051.541.1 vs. uniprot
Match: A0A6H5JKQ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKQ4_9PHAE) HSP 1 Score: 316 bits (810), Expect = 6.520e-98 Identity = 147/261 (56.32%), Postives = 183/261 (70.11%), Query Frame = 1
Query: 562 AVALKSEKIVYCPIAKVACAEWMNAFRWMDGQEDWQKTQHFNNGLNELSRMELESANQILNSPEWLKVVIVRKPTERLLSCFFQKCNKWNFKTEYINCPYLELWPDLFTSKY--------PSDETFSVIVNAFEERGWKRMFADYVNSIVRQVEANPCDQNRHWSPQYCHCSLGRALSVYHIAGWSNMTEAVASAIVPVASTVERGQEIAEFLESRMKYNHETPDKKTGAGAHVDEAYSESMLETVRVAYAKDYELFSKYW 1320
A+ALKSE+IVYCPI KVAC EW+ FRW+DG EDW + +H +GL+ L M++E NQILNSP+WLK +VR+P +RLLSCF QKCN++N + EY NCPYLELWPDLF + P +T +++ AF RG MFA YV I R+V+ +PC QN+HWSPQYCHCSL V+ I GW+NMTEA ++AIVP AS+ RG EI EFL RM NHE KKT AG+ EAY+ L+ V AYAKDY+LFS+YW
Sbjct: 107 ALALKSERIVYCPIQKVACTEWIKVFRWIDGHEDWAEPRHQKHGLDVLEEMDVERGNQILNSPDWLKFAVVREPAQRLLSCFLQKCNRYNMENEYSNCPYLELWPDLFDRERFPDGVPTRPGVDTLAIVWEAFTSRGRDSMFAPYVEVITRRVKQDPCGQNKHWSPQYCHCSLDVTAPVFRIVGWANMTEAASAAIVPFASSSARGLEIKEFLVDRMDTNHERHGKKTSAGSRSQEAYTAEALQAVHEAYAKDYKLFSQYW 367
BLAST of mRNA_F-serratus_M_contig1051.541.1 vs. uniprot
Match: D7G2B9_ECTSI (Similar to dermatan 4-sulfotransferase-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2B9_ECTSI) HSP 1 Score: 159 bits (401), Expect = 2.570e-40 Identity = 87/257 (33.85%), Postives = 128/257 (49.81%), Query Frame = 1
Query: 562 AVALKSEKIVYCPIAKVACAEWMNAFRWMDGQEDWQKT---QHFNNGLNELSRMELESANQILNSPEWLKVVIVRKPTERLLSCFFQKCNKWNFKTEYINCPYLELWPDLFTSKYPSDETFSVIVNAFEERGWKRMFADYVNSIVRQVEANPCDQNRHWSPQYCHCSLGRALSVYHIAGWSNM-TEAVASAIVPVASTVERGQEIAEFLESRMKYNHETPDKKTGAGAHVDEAYSESMLETVRVAYAKDYELFSKYW 1320
A+ + ++ ++YCPIAKVACAEW RWM G DW NG+ L+R + ++N WLK V+VR P +RLLS F KC E+ NCPY E P F D A +++F D++ + R V C N HW PQ+C CS+ R YH+ ++NM TEAV + +R + + EF+ R N + K GA + + +S+ L+ +++ Y KDY LF +Y+
Sbjct: 4 AMYVPADGMIYCPIAKVACAEWRKTLRWMLGIPDWDTGPIHDQGKNGIPLLARRKARDIELMMNDDSWLKFVVVRDPADRLLSAFLNKC----LGGEWQNCPYTEFMPQRFPGVSKRDAATDTKFRAAMNDEPRKVFRDFMLGVRRDVRLTGCKVNSHWRPQHCFCSIARFRESYHVVPFANMSTEAVNLVDHMRRPSPDRAELLREFIVQRFSSNQDA--KAQGATSKRERYFSQEALDVIKMVYGKDYSLFGEYF 254
BLAST of mRNA_F-serratus_M_contig1051.541.1 vs. uniprot
Match: D8LBQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBQ5_ECTSI) HSP 1 Score: 151 bits (382), Expect = 1.770e-39 Identity = 70/121 (57.85%), Postives = 85/121 (70.25%), Query Frame = 1
Query: 958 MFADYVNSIVRQVEANPCDQNRHWSPQYCHCSLGRALSVYHIAGWSNMTEAVASAIVPVASTVERGQEIAEFLESRMKYNHETPDKKTGAGAHVDEAYSESMLETVRVAYAKDYELFSKYW 1320
MFA YV+ I R+++ +PC QN+HWSPQYCHCSL V+ I GW+NMTE ++AIVP AS+ RG EI EFL RM NHE KKT AG+ EAY+ L+ V AYAKDYELFS+YW
Sbjct: 1 MFALYVDVITRRIKQDPCGQNKHWSPQYCHCSLDVTAPVFRIVGWANMTEVASAAIVPFASSPARGLEIKEFLVDRMDTNHERHGKKTSAGSRSQEAYTTEALQAVHEAYAKDYELFSQYW 121
BLAST of mRNA_F-serratus_M_contig1051.541.1 vs. uniprot
Match: A0A6H5JC58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC58_9PHAE) HSP 1 Score: 130 bits (327), Expect = 1.660e-28 Identity = 72/218 (33.03%), Postives = 102/218 (46.79%), Query Frame = 1
Query: 460 QLPFQRPRDGRRKQPEPGNEMQALVSKAPTIPVEAVALKSEKIVYCPIAKVACAEWMNAFRWMDGQEDWQKT---QHFNNGLNELSRMELESANQILNSPEWLKVVIVRKPTERLLSCFFQKCNKWNFKTEYINCPYLELWPDLFTSKYPSDETFSVIVNAFEERGWKRMFADYVNSIVRQVEANPCDQNRHWSPQYCHCSLGRALSVYHIAGWSNMT 1104
+LPF DG + G V + + A+ + + ++YCPIAKVACAEW RWM G DW NG+ L+R + ++N WLK V+VR P +RLLS F KC E+ NCPY E P F D A +++F D++ + + V C N HW PQ+C CS+ R YH+ ++NM+
Sbjct: 136 ELPFLEGADGAEWEGRAGAARWMRVRSSGAMH-PAMYVPGDGMIYCPIAKVACAEWRKTLRWMLGIPDWDTGPIHDQGKNGIPLLARRKARDIELMMNDDSWLKFVVVRDPADRLLSAFLNKC----LGGEWQNCPYTEFMPQRFPGVSKRDAATDTKFRAAINDEPRKVFRDFMLGVQKDVRLRGCKVNSHWRPQHCFCSIARFRESYHVVPFANMS 348
BLAST of mRNA_F-serratus_M_contig1051.541.1 vs. uniprot
Match: D8LPX9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPX9_ECTSI) HSP 1 Score: 122 bits (307), Expect = 1.830e-26 Identity = 93/307 (30.29%), Postives = 130/307 (42.35%), Query Frame = 1
Query: 565 VALKSEKIVYCPIAKVACAEWMNAFRWMDGQEDWQKTQHFN------NGLNELSRMELESANQILNSPEWLKVVIVRKPTERLLSCFFQKCNKWNFKTEYIN------CPYLELWPDLFTSKYPSDETFSVIVNAFEERGWKRMFADYVNSIVRQV--EANPCD-QNRHWSPQYCHCSLGRALSVYHIAGWSNMT-EAVASAI-----VPVASTVE----------------------------------RGQEIAEFLESRMKYNHETPDKKTGAGAHVDEAYSESMLETVRVAYAKDYELFSKYW 1320
V L+ E I+YCPIAKVA AEW + RWM G EDW H N NGL L LE L S + + V+VR P ERL+S F KC + +N C YL L P LF + + + ER + F + + I+ ++ E + C N H+ PQ C C L L +H+ + NM+ EA A A +P++ E R QEIA+FL R + + K TGA + S +L V + +DYE+ +Y+
Sbjct: 64 VILRGEGIIYCPIAKVASAEWKRSLRWMVGIEDWMGN-HTNLHSAGKNGLERLQEWGLEGITWALESDRYFRFVVVRDPAERLVSAFLNKCVTDGYMRGRLNRQGAPNCAYLSLMPTLFPNATEATLDTHQTLRDLVEREPEDTFYHFASGILAEMKREGDACKVSNHHFQPQMCFCDLREILPAFHVIPFHNMSAEAAAFAARIPEPLPISPHKEATDGGTAGISKSSIGKDGPGGMAQGGRGTGVSGSRRQEIADFLTERFETARDKDVKVTGAADRKNMFLSNRVLRVVHQMFKEDYEVLGQYF 369
BLAST of mRNA_F-serratus_M_contig1051.541.1 vs. uniprot
Match: UPI0003F084FF (carbohydrate sulfotransferase 8-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F084FF) HSP 1 Score: 58.2 bits (139), Expect = 2.380e-5 Identity = 55/267 (20.60%), Postives = 101/267 (37.83%), Query Frame = 1
Query: 565 VALKSEKIVYCPIAKVACAEWMNAFRWMDGQEDWQKTQHFNNGLNELSRMELESANQILNSPEWLKVVIVRKPTERLLSCFFQKCNKWNFKTEYINCPYLELWPDLFTSKYPSDETFSVI-------VNAFEERGWKRMFADYVNSIVRQVEANPCDQNRHWSPQYCHCSLGRALSVYHIAGWSNMTEAVASAIVPVASTVERGQEIAEFLESRMKYNHETPDKKTGAGAHVDEAYSESMLETVRVAYAKDYELFSKYW*WPTLRNN 1344
V K + +YCP+AKVA A W ++G + + H + L + R + +++K + VR P +RLLS + K PD + YP + S+I N+ + G F+++V ++ + + P N HW P Y C + + I + + + + +T + EF ES H T K + ++ + + Y D+++F + + L N
Sbjct: 69 VISKHYRFLYCPVAKVAEANWKRVIMVLEGTANTTQELHHSRVLGKDGRFYQTIKDAGKEFDDFVKFLFVRHPFKRLLSAYRNKFEN----------------PDEWGLIYPKNYGRSIIKKYRPKATNSSLQTGNDVTFSEFVKYVLDESDREPEGLNMHWLPMYLSCDVCSRRFNF-IGKFETLHNDAKHLLQKIHAT-----NVVEFPESESCATHVTNSSKEETYHSYFKELTQGEIRKLYKLYRPDFKMFGYNFPYELLDNK 313 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1051.541.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1051.541.1 >prot_F-serratus_M_contig1051.541.1 ID=prot_F-serratus_M_contig1051.541.1|Name=mRNA_F-serratus_M_contig1051.541.1|organism=Fucus serratus male|type=polypeptide|length=333bp MSDSVSKSVTIPRYRRVEKCAGDWAKASLAVGGFILLLSCWHGGAQLPFQback to top mRNA from alignment at F-serratus_M_contig1051:103374..126292+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1051.541.1 ID=mRNA_F-serratus_M_contig1051.541.1|Name=mRNA_F-serratus_M_contig1051.541.1|organism=Fucus serratus male|type=mRNA|length=22919bp|location=Sequence derived from alignment at F-serratus_M_contig1051:103374..126292+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1051:103374..126292+ >mRNA_F-serratus_M_contig1051.541.1 ID=mRNA_F-serratus_M_contig1051.541.1|Name=mRNA_F-serratus_M_contig1051.541.1|organism=Fucus serratus male|type=CDS|length=1998bp|location=Sequence derived from alignment at F-serratus_M_contig1051:103374..126292+ (Fucus serratus male)back to top |