mRNA_F-serratus_M_contig105.519.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig105.519.1 vs. uniprot
Match: UPI001AAC9930 (calpain-3 isoform X1 n=9 Tax=Rana temporaria TaxID=8407 RepID=UPI001AAC9930) HSP 1 Score: 123 bits (309), Expect = 6.800e-25 Identity = 152/625 (24.32%), Postives = 238/625 (38.08%), Query Frame = 3
Query: 1269 LWEDSDFPVDQSSICLREGVISPSLPPPEAIRWLRPSEIAKGDQTVLFAGDFPGDGPIVPGQLADQWLLSAMAILTGRPHLLRLLF---QHTGQEDAGRYCIRLFKDANWIDVFVDSRVPCSVDGKVLFCHGQERHEMWGYLVEKAFAKAHGCYENLMHGDTCEALRDLTGGVAEKLQWARFSASSTRMTLELQPRIQPDTSPASGKVGDATPCLRLTGWGLSAGETRSSGWIFDEMKNRISRGQVLGCSL----------------QTWLRDPWEDQDEESNTPNQDDGVEMNRRRKAPSGRNGMLFPPSN---RIMKGVSSWVAYCVL----EAFETDKLRLVRLKDPWSGRFFGAQPGQYLGDWGPKSPLWSARPTLASELLPRTLP--GMFWMAFDTFVEVFNTLYAVDLAEDI----EGQTTGGMANNNKQEKKLTNKRAHKSSAIGFREGRCEGRW-EGPMCGGRFTDGKGWLAGTQAFLQI--EPCSPKRSESAMTTPSAVKARNADKKANIYITLTQEDSRYHGKDYSTRDERRRSIGFLVHSHKWLAESVRGIPK-LSK--IVQNETKHVTCPFVPRRDVSIHLALPPGQYAILPTTLVPGTPGRFWVHVKSADPN 3029
L++D +FP D+SS+ + P W RP EI + Q ++ + I G L D W L+A+A LT LL + Q+ + AG + + ++ +WIDV +D +P + + +++F +R+E W L+EKA+AK HG YE L G+T EA+ D TGGV E + + DA L F MK RG ++GCS+ Q +R + D++ G+E K + + PS R+ G+ AY V F+ DK++LVRL++PW ++ G W S W+ L + G FWM+FD F++ F L +L D + QT N EGRW G GG + Q L++ E P+ +E + A+ +N K + L +IGF ++ + + + G + L K + N +K ++ R+VS LPP +Y I+P+T P G F + V S N
Sbjct: 66 LFQDREFPADESSLFYSQTF-------PVKFEWKRPPEICENPQFIIGGANRTD---ICQGDLGDCWFLAAIACLTLNEKLLFRVIPPEQNFTENYAGIFHFQFWRYGDWIDVIIDDCLP-TFNNQLVFTKSSQRNEFWSALLEKAYAKLHGSYEALKGGNTTEAMEDFTGGVTEFYE-----------------------------IKDAPKDL------------------FKIMKKAFERGSLIGCSIDEANGLSYGISPPDMGQALIRMIQSEGDKQP-------GLEG----KGLEPKPYVAIVPSQFETRMASGLVKGHAYSVTGVEETTFKADKVKLVRLRNPWG-------QVEWNGSWSDNSKEWNIIDKSEKSRLQHQIKEDGEFWMSFDDFMKNFTKLEICNLTADALESDQLQTWTVSVN--------------------------EGRWVRGCSAGGCRNFPDTYWTNPQYRLKLLEEDDDPEDNEVVCSFLVALMQKNRRKDRKMGANLF-------------------TIGFAIYE---VPKEMHGNKQHLQKDFFLYNASKDRCKSYINMREVSQRFRLPPSEYVIIPSTYEPHQEGEFILRVFSEKRN 566
BLAST of mRNA_F-serratus_M_contig105.519.1 vs. uniprot
Match: UPI001CF53F96 (calpain-3 isoform X1 n=6 Tax=Bufo TaxID=8383 RepID=UPI001CF53F96) HSP 1 Score: 123 bits (308), Expect = 8.990e-25 Identity = 153/624 (24.52%), Postives = 243/624 (38.94%), Query Frame = 3
Query: 1269 LWEDSDFPVDQSSICLREGVISPSLPPPEAIRWLRPSEIAKGDQTVLFAGDFPGDGPIVPGQLADQWLLSAMAILTGRPHLLRLLF---QHTGQEDAGRYCIRLFKDANWIDVFVDSRVPCSVDGKVLFCHGQERHEMWGYLVEKAFAKAHGCYENLMHGDTCEALRDLTGGVAEKLQWARFSASSTRMTLELQPRIQPDTSPASGKVGDATPCLRLTGWGLSAGETRSSGWIFDEMKNRISRGQVLGCSLQTWLRDPWEDQDEESN--TPNQDDGVEMNRRRKAPSGR-----NGMLFPP--------SNRIMKGVSSWVAYCVL----EAFETDKLRLVRLKDPWSGRFFGAQPGQYLGDWGPKSPLWSARPTLASELLPRTL--PGMFWMAFDTFVEVFNTLYAVDLAEDI---EGQTTGGMANNNKQEKKLTNKRAHKSSAIGFREGRCEGRW-EGPMCGGRFTDGKGWLAGTQAFLQI--EPCSPKRSESAMTTPSAV--KARNADKKA--NIYITLTQEDSRYHGKDYSTRDERRRSIGFLVHSHKWLAESVRGIPK-LSK--IVQNETKHVTCPFVPRRDVSIHLALPPGQYAILPTTLVPGTPGRFWVHVKSADPN 3029
L+ED DFP +++S+ + P W RP EI + + ++ + I G L D W L+A+A LT LL + Q+ + AG + + ++ +W+DV +D +P + + +++F +R+E W L+EKA+AK HG YE L G+T EA+ D TGGV E + ++ P+ +F +K RG ++GCS+ +D+D S P D G M + + N PP R+ G+ AY V AF+ DK++LVRL++PW ++ G W S W+ L + G FWM+FD F++ F L +L D + T ++ N EGRW G GG + Q L++ E P +E + A+ K R D+KA N+Y +IGF ++ + + + G + L K + N +K ++ R+VS LPP +Y I+P+T P G F + V S N
Sbjct: 65 LFEDRDFPANETSLFYSQTF-------PVKFEWKRPPEICENPEFIIGGANRTD---ICQGDLGDCWFLAAIACLTLNEKLLFRVIPPDQNFTENYAGIFHFQFWRYGDWVDVVIDDCLP-TFNNQLVFTKSSQRNEFWSALLEKAYAKLHGSYEALKGGNTTEAMEDFTGGVTEFYE------------IKEAPKD-----------------------------------LFRILKKAFERGSLIGCSI--------DDKDHFSFGVVPPSDMGEAMKKMIEGVGDTHHDCDNSHPKPPLAIVPAHFETRMASGLVKGHAYSVTGVEETAFKRDKVKLVRLRNPWG-------QVEWNGSWSDNSKEWTVIDKSEKSRLQHQINEDGEFWMSFDDFMKNFTKLEICNLTADALESDSLQTWTVSVN-------------------------EGRWVRGCSAGGCRNFPDTYWTNPQYRLKLLEEDDDPDDNEVVCSFLVALMQKNRRKDRKAGANLY-----------------------TIGFAIYE---VPKEMHGNKQHLQKDFFLYNASKDRCKSYINMREVSQRFRLPPSEYVIIPSTYEPHQEGDFILRVFSEKRN 564
BLAST of mRNA_F-serratus_M_contig105.519.1 vs. uniprot
Match: A0A7S0HLP1_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HLP1_9CRYP) HSP 1 Score: 122 bits (306), Expect = 9.010e-25 Identity = 66/177 (37.29%), Postives = 97/177 (54.80%), Query Frame = 3
Query: 1359 IRWLRPSEIAKGDQTVLFAGDFPGDGP---------IVPGQLADQWLLSAMAILTGRPHLLRLLF---QHTGQEDAGRYCIRLFKDANWIDVFVDSRVPCSVDGKVLFCHGQERHEMWGYLVEKAFAKAHGCYENLMHGDTCEALRDLTGGVAEKLQWARFSASSTRMTLELQPRIQ 1853
IRWLRPS+I+ V + P P + G L D W + A+A+L RP L+R LF E+ G Y +R +K+ W+++ VD R+P ++ G LF Q+ E+W ++EKA+AK HGCYE L G AL+DLTGGV +KL+++ LE++ RI+
Sbjct: 93 IRWLRPSQISYDSLDVKIGAERPKLYPKESQAMFPYVAMGALGDSWFVGALALLASRPELVRQLFVGYTSPSCENCGIYTVRFYKNGKWVNITVDDRLPATLQGNFLFSRSQKGTELWLPVLEKAYAKLHGCYELLFQGSVQYALKDLTGGVPQKLKFS---------DLEVEARIK 260
BLAST of mRNA_F-serratus_M_contig105.519.1 vs. uniprot
Match: UPI001CB69461 (calpain-A-like isoform X9 n=1 Tax=Frieseomelitta varia TaxID=561572 RepID=UPI001CB69461) HSP 1 Score: 122 bits (306), Expect = 1.200e-24 Identity = 78/201 (38.81%), Postives = 108/201 (53.73%), Query Frame = 3
Query: 1200 QATAFLQFWSEGSVNHVLIPNGTLWEDSDFPVDQSSICLREGVISPSLPPPEAIRWLRPSEIAKGDQTVLFAGDFPGDGPIVPGQLADQWLLSAMAILTGRPHLLRLLF---QHTGQEDAGRYCIRLFKDANWIDVFVDSRVPCSVDGKVLFCHGQERHEMWGYLVEKAFAKAHGCYENLMHGDTCEALRDLTGGVAEKLQ 1793
+A A +Q +S+ + H + GTL+ED +FP D SS+ S P I W RP EIA Q LF F + G+L D WLL+A+A LT +L + Q + AG + R ++ W+DV +D R+P + G++L+ H E +E W L+EKA+AK HG YE L G TCEA+ D TGGV E Q
Sbjct: 42 RARAAVQDFSK--LKHECLATGTLFEDPEFPADDSSLYF-------SRRPDRYIEWKRPMEIADNPQ--LFVEGF-SRFDVQQGELGDCWLLAAVANLTMDSNLFFQVVPEDQSFEENYAGIFHFRFWQYGRWVDVVIDDRLP-TYHGELLYLHSAEVNEFWSALLEKAYAKLHGSYEALKGGTTCEAMEDFTGGVTEMYQ 229
BLAST of mRNA_F-serratus_M_contig105.519.1 vs. uniprot
Match: A0A8C7D0S1_ONCKI (Calpain-1 catalytic subunit n=1 Tax=Oncorhynchus kisutch TaxID=8019 RepID=A0A8C7D0S1_ONCKI) HSP 1 Score: 122 bits (305), Expect = 1.290e-24 Identity = 76/207 (36.71%), Postives = 108/207 (52.17%), Query Frame = 3
Query: 1176 DSFIAKDQQATAFLQFWSEGSVNHVLIPNGTLWEDSDFPVDQSSICLREGVISPSLPPPEAIRWLRPSEIAKGDQTVLFAGDFPGDGPIVPGQLADQWLLSAMAILTGRPHLLRLLFQHTGQEDAGRYC----IRLFKDANWIDVFVDSRVPCSVDGKVLFCHGQERHEMWGYLVEKAFAKAHGCYENLMHGDTCEALRDLTGGVAE 1784
D + ++ A F Q S+ + + +L+EDS FP SS+ E + P + +RW+RP+EI Q ++ D I G L D WLL+A+A LT +LL + H GQ+ G+Y + ++ W++V +D R+P DGK+LF H E E W L+EKA+AK HGCYE L G T E D TGGV E
Sbjct: 20 DEGLGQNHNAVKF-QGQDYESLRARCLQSRSLFEDSLFPCASSSLGFNE--LGPRSSKTQGVRWMRPTEICTRPQFIV---DGATRTDICQGALGDCWLLAAIASLTLNDNLLHRVVPH-GQDFGGQYAGIFHFQFWQYGEWVEVVIDDRLPVK-DGKLLFVHSAEGGEFWSALLEKAYAKLHGCYEALSGGSTSEGFEDFTGGVTE 218 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig105.519.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pages
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig105.519.1 >prot_F-serratus_M_contig105.519.1 ID=prot_F-serratus_M_contig105.519.1|Name=mRNA_F-serratus_M_contig105.519.1|organism=Fucus serratus male|type=polypeptide|length=792bp MFDRLLPGGSPLLILRQRCAFALLCSASIGEKADFVHSLFDFRSEGDLNLback to top mRNA from alignment at F-serratus_M_contig105:536153..554503+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig105.519.1 ID=mRNA_F-serratus_M_contig105.519.1|Name=mRNA_F-serratus_M_contig105.519.1|organism=Fucus serratus male|type=mRNA|length=18351bp|location=Sequence derived from alignment at F-serratus_M_contig105:536153..554503+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig105:536153..554503+ >mRNA_F-serratus_M_contig105.519.1 ID=mRNA_F-serratus_M_contig105.519.1|Name=mRNA_F-serratus_M_contig105.519.1|organism=Fucus serratus male|type=CDS|length=4752bp|location=Sequence derived from alignment at F-serratus_M_contig105:536153..554503+ (Fucus serratus male)back to top |