mRNA_F-serratus_M_contig105.509.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig105.509.1
Unique NamemRNA_F-serratus_M_contig105.509.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig105.509.1 vs. uniprot
Match: A0A6H5L1I7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1I7_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 1.310e-17
Identity = 44/78 (56.41%), Postives = 52/78 (66.67%), Query Frame = 1 
Query:   49 ESEVVIALGSRTTILHPEIKRHRAWWQEILRSRVEEKLAKRVSSPAKDS-----SSLLVDGQGHAHVRLLEKVAVLLS 267
            ESE V+ALGSRTT LHPE+KRHRAWW+EIL   V   LA+RV SP         +SLLVDG+ H HV LLE +    +
Sbjct:   11 ESEAVLALGSRTTTLHPELKRHRAWWREILSKNVLRTLAERVVSPPAAEKGHAPTSLLVDGERHPHVDLLEDLGAFFT 88
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BLAST of mRNA_F-serratus_M_contig105.509.1 vs. uniprot
Match: D8LKG5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKG5_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 1.580e-16
Identity = 46/78 (58.97%), Postives = 52/78 (66.67%), Query Frame = 1 
Query:   49 ESEVVIALGSRTTILHPEIKRHRAWWQEILRSRVEEKLAKRVSSPAKDS-----SSLLVDGQGHAHVRLLEKVAVLLS 267
            ESE V+ALGSRTT LHPE+KRHRAWW+EIL   V   LA RVSSP         SSLLV+G+ H HV LLE +    S
Sbjct:   11 ESEAVLALGSRTTTLHPELKRHRAWWREILSKNVLRALADRVSSPPAAEKGHAPSSLLVEGERHPHVDLLEDLGAFFS 88
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig105.509.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L1I7_9PHAE1.310e-1756.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKG5_ECTSI1.580e-1658.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig105contigF-serratus_M_contig105:317230..322564 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size317
Cds size312
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig105.509.1prot_F-serratus_M_contig105.509.1Fucus serratus malepolypeptideF-serratus_M_contig105 317230..322561 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928875.1982117-CDS-F-serratus_M_contig105:317229..3173551622928875.1982117-CDS-F-serratus_M_contig105:317229..317355Fucus serratus maleCDSF-serratus_M_contig105 317230..317355 -
1690962610.1567347-CDS-F-serratus_M_contig105:317229..3173551690962610.1567347-CDS-F-serratus_M_contig105:317229..317355Fucus serratus maleCDSF-serratus_M_contig105 317230..317355 -
1622928875.218764-CDS-F-serratus_M_contig105:322375..3225611622928875.218764-CDS-F-serratus_M_contig105:322375..322561Fucus serratus maleCDSF-serratus_M_contig105 322376..322561 -
1690962610.168434-CDS-F-serratus_M_contig105:322375..3225611690962610.168434-CDS-F-serratus_M_contig105:322375..322561Fucus serratus maleCDSF-serratus_M_contig105 322376..322561 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928875.2316847-UTR-F-serratus_M_contig105:322561..3225641622928875.2316847-UTR-F-serratus_M_contig105:322561..322564Fucus serratus maleUTRF-serratus_M_contig105 322562..322564 -
1690962610.1758509-UTR-F-serratus_M_contig105:322561..3225641690962610.1758509-UTR-F-serratus_M_contig105:322561..322564Fucus serratus maleUTRF-serratus_M_contig105 322562..322564 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig105.509.1

>prot_F-serratus_M_contig105.509.1 ID=prot_F-serratus_M_contig105.509.1|Name=mRNA_F-serratus_M_contig105.509.1|organism=Fucus serratus male|type=polypeptide|length=104bp
MTSRVEMSTSTSVLSESEVVIALGSRTTILHPEIKRHRAWWQEILRSRVE
EKLAKRVSSPAKDSSSLLVDGQGHAHVRLLEKVAVLLSRQVEDGVFISLG
EAAS
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mRNA from alignment at F-serratus_M_contig105:317230..322564-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig105.509.1 ID=mRNA_F-serratus_M_contig105.509.1|Name=mRNA_F-serratus_M_contig105.509.1|organism=Fucus serratus male|type=mRNA|length=5335bp|location=Sequence derived from alignment at F-serratus_M_contig105:317230..322564- (Fucus serratus male)
GAGATGACTAGCCGGGTTGAGATGAGCACGTCTACCTCCGTGCTTTCGGA
AAGCGAAGTGGTCATTGCTCTCGGGAGCCGAACCACGATCCTCCACCCTG
AAATAAAGCGGCACAGGGCGTGGTGGCAAGAGATATTGAGATCGCGGGTT
GAAGAAAAGCTCGCCAAGCGCGTCTCCTCCCCTGCGAAGGTGTGGTTGAT
CACATCATGATACCATGAAACAAGTTTCATTGTAGCATGTTTCGTGCTTG
ATACCGGCTTATTTTCTTCAGTAGAGCTTGCTTGGATGCACCACGCGATT
CCTGCACCGCAAACGATCGTATCCGTTTCTTCTAAGTGTACCTTGTACCT
GACAGCCACACTTGTAAATTGTACCATCGATATTGATATGTACAACAGCA
GTATGTCATAGTGTAGTGTAACATAATTGCTTCGCGCAACTGGTGACTTG
ACAAGTACTTTCTATCTTTCCCTTGTGAGTAAGATACCAGTATGTTACAA
CTTACCAACATTTCACGTTAGCACAACCGTTTTTCCAGTACAGTTAGTAG
TGCCCCCAGTTTTACCTCGAGTATTGCGGTGCCGTACATGTGGCAGCTTT
CTTTCGCGTGGGCCATCTACACAGCAGCCGTGCAAGCTGGTGATTTTGCG
ACGGTCTTGTGCTTCTAGTTTGACGTACAGACAGACAACCATTGATGACG
TGACCAATTGACCTGAAAAACACCCGTCCACTTTGTTAGGCTCTGTCTTA
ACGACGAGATAGAATATATTCATATAGAATCTGTATGATTACAGATTCCG
TCGACAGATCCTATTTTGGGTCCGAACGACCATATTAGGAAATCCGGTGT
CATAAGACAGTCACGCTTCCGAGTTATTTTTAACATCTACACACTGGTGA
GGGCGGCATAGGGCGGACAGCGTAACGAGGTTCGATCTCGCTCGAACCTC
GAACTTGCGCCCCCCTCGGAGCTCCGCTATCTAGGGCGCTTGCAAGCCGA
CAGTCAAGCCTCCCCATGAACCATGACTGCCAACAGACTGCAACGAACTA
CTTAACCAAAGTCGGGCATACACAGAGCACCAGATTTTTTTTTGCGTTTC
ACAAGCTCCTCAAGCGATATATGAAAGCCCAATAGCTCGTGCAGTACATG
GTACCATGGTACCTCGCGCGTTGTTTGGGGGCGTCCGGAATACATCAAAC
TCGGTGTACTCGTCGGACTCGTGACTGCTGTTGTCCAGACCCAGCCAGCG
TTATACTCGGATATCCGTTATGATACTGTTGTTTTCATTACGTAGCAGCT
GTTGTCTTTTTTTTTGTTGGTATCAGTTGTACTGTTGGTTCCAGTGTGTA
GCAGCTGATGTCGTTTCTTTTTTTGGTCTCAGTTGTACTTTTTCTATTAC
TAGTAACGTAGCAGGTATGTGTGTTTTTTCTTGTCATCGAATAATTTTGC
ACGACAGAATCTACGTAGAACAGAACGAAAGTGTCGGTGTCTGTGTGTGT
GTGTGTTTATTAGATTGCACCTAACCGCGCAACCCGGCTCTGCCATCCTA
GTCATTCTATGCCACTCGCATTGATCCTGTGTGTGTGTGTATTTTCTTCC
TATTCATTCTGGACCTCAAGTTCGTTGGACGTACCAGCCGGGGTCACACA
GGAGGAAGGTGGCACAGGATTTCTTATCCACCTTCCTTCTGCGGTGCGTG
CGTTAATTTTCTCGCGAGAATGATTTAGCTATTCCTTTCCCTCGTCGACC
GTGAAGTCGAATTTTGTGTACTAACGATTTAGACTAATCGTTCTCCACTC
GTTCAATTTTTATCAGATTATATTAAGTCAAAACAATCAGTTAGAATCTG
TCCACCCGACAGATTCCGTCGTGTTCAGAACTTGCCGTCTAGTAGTGTCG
AGCTCATTTGGCCAATCACAGAGCTATATTCTCGACAGAGCCTGTCGACA
GATTCTGATAACAGATTCTATCTCGACGTTAAGACAGGGCCTTGACCCGG
ACGAGACAGCCGGCCCTGTCTTGCGAGGCCAAATTCTCAGGCGCGAACGG
GGACTGGGAAATATTTATTTTACTGATTAGTAGCTAACCGCGAGCAGGAT
CGGCAGCCTTACCCGGTTGATCCATGCTCTGCTACTGGACAGAGCAGAGT
GAGGACCGTGCACACATACATAGTGTTTGTTGTATCAACAGTGGGTGTGG
GAAAAGAGGGACAAAAGAGGATCCATGGGTTTCCTACATAGGCAGCACCC
GTTACCCGAACTATCTTGAGGACTAACGGCCTTGCGCGAATGGCCTTGTG
CCGGCGGACTCTCGGCGATAAACGCCATCGGTACGCATTTTCGTGACCCG
ACGAACTCGGTACTGAACCGATGGCGGTTGGCGGCATGTATGTTTGTATG
GTGAGCACTTAGATGCACGCCGTCGCGGAAAGCGAAGGGGTCCGCGAGTA
AGCACCAGATTCAGCCTGTTTATAGAGATTGAGTGGGCTGGCGCGGGACG
GGACGGCCGAAGCCGTCTCGCGAGACCAAATTCGGCGCAAAAGGTGGTGG
GGAAAAACTTGTTTCCCCTTTTCAGCTGGCCATGGAGCAGCAATGGTAAC
CATACCCGGTTGATCCACAATCTGCTGAAAGTTCTGACGTTACATGTACC
CCTGGAGTGTACCGGTTTCGGTTTTTGGAGGAATTTCGCGTCCCGCGATA
CAATTTGTGTGTGTCTGTGTTTAGCAGAATAGGGGCTCCAACTAAGCATG
GCTGCCAATTCTGCTTTGTTGTCGCGTCGAAACGGGGAAGATGAAACTCC
CTTATCCCTGTCCGCGCCTGAGAATCTGGTCTAGCGAGACAGGTTTGGAT
GTCCCGTTAGGCGTCAGCCAGCTCATTCTCCACGCCCAGGCTGGCCTTTA
TGCCTTCCTCTCGTTCCACGGTGTACCTCTCTCTACGATTAGCAAGTCTG
CACTGAGGATATGTAGAGCCGCGGCTGTATGGTATGGTAGTCGTATATAG
CAGAGTATGGATCAACCGGGTAAAGTTGCCAATCCTGCTCGTGGTCAGCT
GAAGAGGGAAAATGAACATTTCCCTGTCCCCGTTCGCGCCTGAGAATTTG
GTCTCGCGAGACGGGTTCTGCCGTCCCGTCCCGTGTCAGCCTGCTCATTC
TCTATACTCGGGCTGAATCTGGTGCTCACTCGCGGGATTCCTCACGAGTT
TCGCGGCGGCGTCCATTTATTGCGAGCGTAGTGAGCTTCTAATCTGGCAG
GGGCATCAATTTGGGCTCGGGTGTATCAAAGACTGTGCACATTGACCAAT
CTGAATACCATTTCGGCATCTCGGATTCGTGTCGACCAATAAACATTCTG
CTTATATGTGGAAATTCTTTAGAAATTTCGGCACGGCCTATGTTCTATTC
CGGGGGCGAAAAGTTCTTTTTTTGCGAGCGTAGTGAGCTTCTCATTTGCA
GGGTGCATCAATTTGGGCTGCAGTGTATCAAAAACTGTTCACTGTTTGTA
TGTAGGGTGTGTTGGATTTGCACGGCGAAAAAAAACGTAGGCGAGAACCA
GGGTGAGATGGGAATATCCTTAAGAGACACAGGATGCTGCATAGTAAAGG
GTTCTGCTGGATATTCCGGTTGTACAGGCCTTCACGCCCTCTTGAACAAT
CTCGAACACAGGGTTTTCTGCGCACGGAGTCTACTGCTGTACAAAAGTGT
GCCCGTAATAGAACATAATTTGCATCGGGTTCAAAAGTCGCTGGCGAGAA
CCGGGGAGAGATGGAAAATTTCTGAGGATTCTACGCATAGAGGGTTCTGC
CGAACACTCCCGTTGTACAAGTGTATAGATAGACCTTCACGCTCTCATCA
TGAATAATTTCGAACACAGGGTTCTGCGCATAGAACGTATTGGTACTGCT
GTACAAAGATGTGCTAGTAGGAGTACTGAGTTTGCATCGCGATAAAAAAT
CGTACCTGGTAGGTGAGAACCGGGGAGAGATGGGTTCTGCTGGACACTCC
CGTTGTACAGACCTTCACGCTCTCTTGAACAATTTCGAACACAGGGTTGT
CTGCCTATAATGTCTTCTGCTGTGCAAAGGTGTGCTCGTAATAGAACAGA
ATTTGTATCGGGATCAAAACTCGGTGACAAAAACCGGGGAGAGATCTACT
CGTAGAAGGTTCTGCTGAACATTCCCGTTGTACGCCCCGGTTGCTCAGAA
GTAACCTCGTAACCTTCTGACACGTTGGGACGTAAGTTCGAATCCCGGTA
AACGGAACTTTTTCTCACTAAAAAATGAAATTAAAATAAAATGCCCAAGT
GGAGAACGATTAATTCGGGAAAGGAACGGCTGAATCCTTCTCGCGAGAAA
AATAAAGGCATGCACCACAGAAGAAAGGTGGATGAGAAATTATCTGTGAC
CTTCCTCCTGTGTGACCCCGGCTGGTACATCCAACGAACTTGACGTCTAG
AATAAATGGGAAGAAAACACACACACACACACACACACACACACACAGAA
ACCGCTAAAAAGTTGTAGACGCCAAGGGGAAAACGGGGGAGACTTCGGCG
GAAAGAGGAAGAGATGTAGAAAAGAAAGGATCGATCCAGTAGCTGCCAAC
TCAGATAATGTAGAGAGAAACAAGGAAGCAGGGGGGGGAGCACAAGGAAC
TCTGGGTTTAAGTAAGAATTGTACAAGTAGAGAGAGCGTGTCCCCTTTGT
CGCGTCTGATCAGAGGTTTTCGTATTAAGTATCATTGATCCCCCCTCGGA
AGGATCAATGCGAGTGGCATAGAATGACTAGGATGACAGGGCCGGATTGC
GTGGTTATGTGCAATTTAATAAATACACACACACACACACACACACACAC
ACACACACACACACACACGCACGCACACACCTGCATTCCTTATTTTCATC
CCCATTATCGGCTTATTTTAGTTTCTTGGCAAGTTTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTTTTTGGGGGGGGGTTGTTCCTAACTTCTTCCACC
CCCCCCCCCCACCTTTACCCCGATGCCCCCTCCTTCCTACATAAAAATCT
TCTGTAAGGCGTCAGACGTTTTGCTGCCTACGCGCGGGGCTTCCCCGTAG
CCCTCATATCCCATCCCACATTACTCCCCCATCGTTTACCACCGATATTC
CCTTCTTAATACTTGCATCATAGAGCTAACACGACGGTGTCATACTTCAT
GCGTTGCAGGACTCTTCATCGCTGCTCGTGGACGGTCAGGGCCACGCCCA
CGTGCGTCTCCTGGAGAAAGTCGCGGTTTTGTTGTCGAGACAGGTCGAGG
ATGGGGTGTTCATCTCTCTCGGGGAGGCAGCGTCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig105:317230..322564-

>mRNA_F-serratus_M_contig105.509.1 ID=mRNA_F-serratus_M_contig105.509.1|Name=mRNA_F-serratus_M_contig105.509.1|organism=Fucus serratus male|type=CDS|length=624bp|location=Sequence derived from alignment at F-serratus_M_contig105:317230..322564- (Fucus serratus male)
ATGACTAGCCGGGTTGAGATGAGCACGTCTACCTCCGTGCTTTCGGAAAG
CGAAGTGGTCATTGCTCTCGGGAGCCGAACCACGATCCTCCACCCTGAAA
TAAAGCGGCACAGGGCGTGGTGGCAAGAGATATTGAGATCGCGGGTTGAA
GAAAAGCTCGCCAAGCGCGTCTCCTCCCCTGCGAAGATGACTAGCCGGGT
TGAGATGAGCACGTCTACCTCCGTGCTTTCGGAAAGCGAAGTGGTCATTG
CTCTCGGGAGCCGAACCACGATCCTCCACCCTGAAATAAAGCGGCACAGG
GCGTGGTGGCAAGAGATATTGAGATCGCGGGTTGAAGAAAAGCTCGCCAA
GCGCGTCTCCTCCCCTGCGAAGGACTCTTCATCGCTGCTCGTGGACGGTC
AGGGCCACGCCCACGTGCGTCTCCTGGAGAAAGTCGCGGTTTTGTTGTCG
AGACAGGTCGAGGATGGGGTGTTCATCTCTCTCGGGGAGGCAGCGTCGGA
CTCTTCATCGCTGCTCGTGGACGGTCAGGGCCACGCCCACGTGCGTCTCC
TGGAGAAAGTCGCGGTTTTGTTGTCGAGACAGGTCGAGGATGGGGTGTTC
ATCTCTCTCGGGGAGGCAGCGTCG
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