mRNA_F-serratus_M_contig105.508.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig105.508.1
Unique NamemRNA_F-serratus_M_contig105.508.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig105.508.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig105contigF-serratus_M_contig105:305837..306998 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1105
Cds size1104
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928872.4760811-CDS-F-serratus_M_contig105:305837..3061811622928872.4760811-CDS-F-serratus_M_contig105:305837..306181Fucus serratus maleCDSF-serratus_M_contig105 305838..306181 -
1690962609.1969452-CDS-F-serratus_M_contig105:305837..3061811690962609.1969452-CDS-F-serratus_M_contig105:305837..306181Fucus serratus maleCDSF-serratus_M_contig105 305838..306181 -
1622928872.5297003-CDS-F-serratus_M_contig105:306238..3069981622928872.5297003-CDS-F-serratus_M_contig105:306238..306998Fucus serratus maleCDSF-serratus_M_contig105 306239..306998 -
1690962609.2062178-CDS-F-serratus_M_contig105:306238..3069981690962609.2062178-CDS-F-serratus_M_contig105:306238..306998Fucus serratus maleCDSF-serratus_M_contig105 306239..306998 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig105.508.1prot_F-serratus_M_contig105.508.1Fucus serratus malepolypeptideF-serratus_M_contig105 305838..306998 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig105.508.1

>prot_F-serratus_M_contig105.508.1 ID=prot_F-serratus_M_contig105.508.1|Name=mRNA_F-serratus_M_contig105.508.1|organism=Fucus serratus male|type=polypeptide|length=368bp
TAAVVEAAVAKGAVCATELPGNSEGHRATTSSGGSAGERQQQSEGGNSDV
SKSKGKNAPSSERSRRGGAGDSKRTSSPRNSRGCGRSPRSGDDDSGRARS
RSNSHAPERLSKIGGNARQESYRTTSSHERSRRGRGSDSRREPSRSNSGT
RGRSTKSGSKVIEKNSRRTPSHERKKRDVGSDNRRAPYRSNSRTRERSAK
SGGGDSRRASSRSNSRAREMSRSRGNVGRESDCRASSRERSRRGGNENRR
VFSRSGPRTPSPDRRKHSGDSGGGSGTIQGRNRLATPRSRSRSFERRNRR
RSRSRSCNSRRRSPSGQRRPCGRNKSHSREIRTAGKESPSRVEASKKKDA
VEMAARVERSATSSGTAT
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mRNA from alignment at F-serratus_M_contig105:305837..306998-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig105.508.1 ID=mRNA_F-serratus_M_contig105.508.1|Name=mRNA_F-serratus_M_contig105.508.1|organism=Fucus serratus male|type=mRNA|length=1162bp|location=Sequence derived from alignment at F-serratus_M_contig105:305837..306998- (Fucus serratus male)
ACGGCGGCGGTGGTAGAGGCGGCGGTGGCAAAGGGAGCAGTGTGCGCTAC
CGAATTACCGGGCAACAGCGAAGGCCACCGCGCCACCACTTCCTCGGGTG
GCAGCGCCGGCGAGAGACAGCAGCAGAGCGAAGGGGGAAACAGCGACGTC
AGTAAGTCAAAAGGTAAAAACGCGCCTAGCAGTGAACGAAGCAGACGGGG
CGGCGCCGGCGATAGCAAGAGAACATCTTCCCCGAGAAACAGTCGCGGGT
GTGGAAGGTCACCAAGGAGTGGCGATGACGACAGTGGGAGAGCTCGCTCA
CGGAGTAACAGCCACGCGCCTGAAAGGTTGTCAAAGATCGGTGGCAACGC
CAGACAGGAGAGTTATCGCACAACTTCAAGCCACGAACGAAGCAGGCGTG
GCCGCGGCAGTGACAGCCGGAGAGAACCCTCCCGAAGTAACAGTGGAACG
CGTGGCAGGTCGACGAAGAGTGGCAGTAAAGTCATAGAGAAAAATAGTCG
CAGAACGCCAAGTCACGAACGAAAGAAACGCGATGTTGGCAGTGACAACC
GGAGAGCACCCTACCGGAGCAACAGTCGCACGCGAGAAAGGTCTGCAAAG
AGCGGCGGTGGTGACAGCCGGAGAGCATCCTCCCGGAGCAACAGTCGCGC
GCGTGAAATGTCAAGGAGTAGAGGCAACGTCGGCAGGGAAAGTGATTGCA
GGGCGTCGAGCCGCGAACGAAGCAGGCGCGGCGGTAATGAAAACCGGAGA
GTATTCTCCCGCAGCAAAAGTCGTGGGCGTGGGCCCTCGTCGAAAAACGG
CGGTATCATCATTAGAGGAAGTGGTCCCAGAACCCCAAGCCCCGATCGAA
GAAAGCACAGCGGAGATAGTGGCGGTGGCAGCGGCACTATTCAGGGCCGC
AACCGCCTCGCCACGCCCCGCTCGCGTTCGAGGAGCTTTGAACGCCGAAA
TCGACGTCGTAGTCGAAGCCGATCGTGCAACAGCAGGCGCCGCTCCCCAA
GTGGGCAGCGACGGCCGTGCGGCCGGAACAAATCTCACTCGCGGGAGATT
CGAACAGCAGGAAAAGAATCCCCATCCCGCGTCGAAGCGTCGAAGAAGAA
AGATGCAGTGGAAATGGCCGCGAGGGTGGAAAGATCTGCAACATCTAGTG
GCACGGCGACCA
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Coding sequence (CDS) from alignment at F-serratus_M_contig105:305837..306998-

>mRNA_F-serratus_M_contig105.508.1 ID=mRNA_F-serratus_M_contig105.508.1|Name=mRNA_F-serratus_M_contig105.508.1|organism=Fucus serratus male|type=CDS|length=2208bp|location=Sequence derived from alignment at F-serratus_M_contig105:305837..306998- (Fucus serratus male)
ACGGCGGCGGTGGTAGAGGCGGCGGTGGCAAAGGGAGCAGTGTGCGCTAC
CGAATTACCGGGCAACAGCGAAGGCCACCGCGCCACCACTTCCTCGGGTG
GCAGCGCCGGCGAGAGACAGCAGCAGAGCGAAGGGGGAAACAGCGACGTC
AGTAAGTCAAAAGGTAAAAACGCGCCTAGCAGTGAACGAAGCAGACGGGG
CGGCGCCGGCGATAGCAAGAGAACATCTTCCCCGAGAAACAGTCGCGGGT
GTGGAAGGTCACCAAGGAGTGGCGATGACGACAGTGGGAGAGCTCGCTCA
CGGAGTAACAGCCACGCGCCTGAAAGGTTGTCAAAGATCGGTGGCAACGC
CAGACAGGAGAGTTATCGCACAACTTCAAGCCACGAACGAAGCAGGCGTG
GCCGCGGCAGTGACAGCCGGAGAGAACCCTCCCGAAGTAACAGTGGAACG
CGTGGCAGGTCGACGAAGAGTGGCAGTAAAGTCATAGAGAAAAATAGTCG
CAGAACGCCAAGTCACGAACGAAAGAAACGCGATGTTGGCAGTGACAACC
GGAGAGCACCCTACCGGAGCAACAGTCGCACGCGAGAAAGGTCTGCAAAG
AGCGGCGGTGGTGACAGCCGGAGAGCATCCTCCCGGAGCAACAGTCGCGC
GCGTGAAATGTCAAGGAGTAGAGGCAACGTCGGCAGGGAAAGTGATTGCA
GGGCGTCGAGCCGCGAACGAAGCAGGCGCGGCGGTAATGAAAACCGGAGA
GTATTCTCCCACGGCGGCGGTGGTAGAGGCGGCGGTGGCAAAGGGAGCAG
TGTGCGCTACCGAATTACCGGGCAACAGCGAAGGCCACCGCGCCACCACT
TCCTCGGGTGGCAGCGCCGGCGAGAGACAGCAGCAGAGCGAAGGGGGAAA
CAGCGACGTCAGTAAGTCAAAAGGTAAAAACGCGCCTAGCAGTGAACGAA
GCAGACGGGGCGGCGCCGGCGATAGCAAGAGAACATCTTCCCCGAGAAAC
AGTCGCGGGTGTGGAAGGTCACCAAGGAGTGGCGATGACGACAGTGGGAG
AGCTCGCTCACGGAGTAACAGCCACGCGCCTGAAAGGTTGTCAAAGATCG
GTGGCAACGCCAGACAGGAGAGTTATCGCACAACTTCAAGCCACGAACGA
AGCAGGCGTGGCCGCGGCAGTGACAGCCGGAGAGAACCCTCCCGAAGTAA
CAGTGGAACGCGTGGCAGGTCGACGAAGAGTGGCAGTAAAGTCATAGAGA
AAAATAGTCGCAGAACGCCAAGTCACGAACGAAAGAAACGCGATGTTGGC
AGTGACAACCGGAGAGCACCCTACCGGAGCAACAGTCGCACGCGAGAAAG
GTCTGCAAAGAGCGGCGGTGGTGACAGCCGGAGAGCATCCTCCCGGAGCA
ACAGTCGCGCGCGTGAAATGTCAAGGAGTAGAGGCAACGTCGGCAGGGAA
AGTGATTGCAGGGCGTCGAGCCGCGAACGAAGCAGGCGCGGCGGTAATGA
AAACCGGAGAGTATTCTCCCGAAGTGGTCCCAGAACCCCAAGCCCCGATC
GAAGAAAGCACAGCGGAGATAGTGGCGGTGGCAGCGGCACTATTCAGGGC
CGCAACCGCCTCGCCACGCCCCGCTCGCGTTCGAGGAGCTTTGAACGCCG
AAATCGACGTCGTAGTCGAAGCCGATCGTGCAACAGCAGGCGCCGCTCCC
CAAGTGGGCAGCGACGGCCGTGCGGCCGGAACAAATCTCACTCGCGGGAG
ATTCGAACAGCAGGAAAAGAATCCCCATCCCGCGTCGAAGCGTCGAAGAA
GAAAGATGCAGTGGAAATGGCCGCGAGGGTGGAAAGATCTGCAACATCTA
GTGGCACGGCGACCGAAGTGGTCCCAGAACCCCAAGCCCCGATCGAAGAA
AGCACAGCGGAGATAGTGGCGGTGGCAGCGGCACTATTCAGGGCCGCAAC
CGCCTCGCCACGCCCCGCTCGCGTTCGAGGAGCTTTGAACGCCGAAATCG
ACGTCGTAGTCGAAGCCGATCGTGCAACAGCAGGCGCCGCTCCCCAAGTG
GGCAGCGACGGCCGTGCGGCCGGAACAAATCTCACTCGCGGGAGATTCGA
ACAGCAGGAAAAGAATCCCCATCCCGCGTCGAAGCGTCGAAGAAGAAAGA
TGCAGTGGAAATGGCCGCGAGGGTGGAAAGATCTGCAACATCTAGTGGCA
CGGCGACC
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