mRNA_F-serratus_M_contig105.505.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig105.505.1
Unique NamemRNA_F-serratus_M_contig105.505.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig105.505.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig105contigF-serratus_M_contig105:300006..300434 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons3
Model size377
Cds size306
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig105.505.1prot_F-serratus_M_contig105.505.1Fucus serratus malepolypeptideF-serratus_M_contig105 300032..300389 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928872.2965968-UTR-F-serratus_M_contig105:300005..3000311622928872.2965968-UTR-F-serratus_M_contig105:300005..300031Fucus serratus maleUTRF-serratus_M_contig105 300006..300031 -
1690962609.10298-UTR-F-serratus_M_contig105:300005..3000311690962609.10298-UTR-F-serratus_M_contig105:300005..300031Fucus serratus maleUTRF-serratus_M_contig105 300006..300031 -
1622928872.3407354-UTR-F-serratus_M_contig105:300389..3004341622928872.3407354-UTR-F-serratus_M_contig105:300389..300434Fucus serratus maleUTRF-serratus_M_contig105 300390..300434 -
1690962609.1521478-UTR-F-serratus_M_contig105:300389..3004341690962609.1521478-UTR-F-serratus_M_contig105:300389..300434Fucus serratus maleUTRF-serratus_M_contig105 300390..300434 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928872.3078477-CDS-F-serratus_M_contig105:300031..3002091622928872.3078477-CDS-F-serratus_M_contig105:300031..300209Fucus serratus maleCDSF-serratus_M_contig105 300032..300209 -
1690962609.1153286-CDS-F-serratus_M_contig105:300031..3002091690962609.1153286-CDS-F-serratus_M_contig105:300031..300209Fucus serratus maleCDSF-serratus_M_contig105 300032..300209 -
1622928872.3193421-CDS-F-serratus_M_contig105:300219..3002821622928872.3193421-CDS-F-serratus_M_contig105:300219..300282Fucus serratus maleCDSF-serratus_M_contig105 300220..300282 -
1690962609.1292503-CDS-F-serratus_M_contig105:300219..3002821690962609.1292503-CDS-F-serratus_M_contig105:300219..300282Fucus serratus maleCDSF-serratus_M_contig105 300220..300282 -
1622928872.3295968-CDS-F-serratus_M_contig105:300324..3003891622928872.3295968-CDS-F-serratus_M_contig105:300324..300389Fucus serratus maleCDSF-serratus_M_contig105 300325..300389 -
1690962609.1416566-CDS-F-serratus_M_contig105:300324..3003891690962609.1416566-CDS-F-serratus_M_contig105:300324..300389Fucus serratus maleCDSF-serratus_M_contig105 300325..300389 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig105.505.1

>prot_F-serratus_M_contig105.505.1 ID=prot_F-serratus_M_contig105.505.1|Name=mRNA_F-serratus_M_contig105.505.1|organism=Fucus serratus male|type=polypeptide|length=102bp
MVCLRLAPAKSINVPVGTTAFIKRSLGRGAPSIRMQRTQDTQYRYGEGPL
DARTASFGLLIISNIKIAAVASTCFNIIIYYTVWRQNLHNYCSLVSSPRW
I*
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mRNA from alignment at F-serratus_M_contig105:300006..300434-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig105.505.1 ID=mRNA_F-serratus_M_contig105.505.1|Name=mRNA_F-serratus_M_contig105.505.1|organism=Fucus serratus male|type=mRNA|length=429bp|location=Sequence derived from alignment at F-serratus_M_contig105:300006..300434- (Fucus serratus male)
GGGGGGTGTCACCGAGGGGGCGTTATCTCCGAACGTCACGGATATATGGT
GTGTCTGCGTTTGGCTCCAGCAAAGTCGATCAACGTACCTGTAGGTACTA
CAGCCTTTATTTATAGTCCTTCCACCTACCGGCTTCATTTATTTGAAGTT
ATCAAACGTAGTTTAGGGCGCGGCGCGCCTTCGATCAGGATGCAGCGGAC
TCAAGATACACAGTAGTACCAGTAGCAGGTATGGTGAAGGCCCGTTGGAC
GCGCGCACCGCCTCCTTTGGTCTATTAATCATATCAAATATCAAAATAGC
CGCGGTGGCAAGTACTTGTTTCAACATAATAATATATTATACCGTTTGGC
GTCAAAACCTCCACAATTATTGCTCTTTGGTGTCTTCCCCAAGATGGATA
TGACCGCAGAAAAAGAAATAATTATGAAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig105:300006..300434-

>mRNA_F-serratus_M_contig105.505.1 ID=mRNA_F-serratus_M_contig105.505.1|Name=mRNA_F-serratus_M_contig105.505.1|organism=Fucus serratus male|type=CDS|length=612bp|location=Sequence derived from alignment at F-serratus_M_contig105:300006..300434- (Fucus serratus male)
ATGGTGTGTCTGCGTTTGGCTCCAGCAAAGTCGATCAACGTACCTGTAGG
TACTACAGCCTTTATATGGTGTGTCTGCGTTTGGCTCCAGCAAAGTCGAT
CAACGTACCTGTAGGTACTACAGCCTTTATCAAACGTAGTTTAGGGCGCG
GCGCGCCTTCGATCAGGATGCAGCGGACTCAAGATACACAGTACAAACGT
AGTTTAGGGCGCGGCGCGCCTTCGATCAGGATGCAGCGGACTCAAGATAC
ACAGTACAGGTATGGTGAAGGCCCGTTGGACGCGCGCACCGCCTCCTTTG
GTCTATTAATCATATCAAATATCAAAATAGCCGCGGTGGCAAGTACTTGT
TTCAACATAATAATATATTATACCGTTTGGCGTCAAAACCTCCACAATTA
TTGCTCTTTGGTGTCTTCCCCAAGATGGATATGACAGGTATGGTGAAGGC
CCGTTGGACGCGCGCACCGCCTCCTTTGGTCTATTAATCATATCAAATAT
CAAAATAGCCGCGGTGGCAAGTACTTGTTTCAACATAATAATATATTATA
CCGTTTGGCGTCAAAACCTCCACAATTATTGCTCTTTGGTGTCTTCCCCA
AGATGGATATGA
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