mRNA_F-serratus_M_contig105.502.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig105.502.1
Unique NamemRNA_F-serratus_M_contig105.502.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig105.502.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig105contigF-serratus_M_contig105:146299..146898 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size600
Cds size387
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig105.502.1prot_F-serratus_M_contig105.502.1Fucus serratus malepolypeptideF-serratus_M_contig105 146359..146745 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928872.6462579-UTR-F-serratus_M_contig105:146298..1463581622928872.6462579-UTR-F-serratus_M_contig105:146298..146358Fucus serratus maleUTRF-serratus_M_contig105 146299..146358 +
1690962609.239069-UTR-F-serratus_M_contig105:146298..1463581690962609.239069-UTR-F-serratus_M_contig105:146298..146358Fucus serratus maleUTRF-serratus_M_contig105 146299..146358 +
1622928872.6841087-UTR-F-serratus_M_contig105:146745..1468981622928872.6841087-UTR-F-serratus_M_contig105:146745..146898Fucus serratus maleUTRF-serratus_M_contig105 146746..146898 +
1690962609.2685552-UTR-F-serratus_M_contig105:146745..1468981690962609.2685552-UTR-F-serratus_M_contig105:146745..146898Fucus serratus maleUTRF-serratus_M_contig105 146746..146898 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928872.6655266-CDS-F-serratus_M_contig105:146358..1467451622928872.6655266-CDS-F-serratus_M_contig105:146358..146745Fucus serratus maleCDSF-serratus_M_contig105 146359..146745 +
1690962609.2508962-CDS-F-serratus_M_contig105:146358..1467451690962609.2508962-CDS-F-serratus_M_contig105:146358..146745Fucus serratus maleCDSF-serratus_M_contig105 146359..146745 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig105.502.1

>prot_F-serratus_M_contig105.502.1 ID=prot_F-serratus_M_contig105.502.1|Name=mRNA_F-serratus_M_contig105.502.1|organism=Fucus serratus male|type=polypeptide|length=129bp
MFRNVYTLSYCLVCSADFLIVSFKMRFFLELQVCVRVMRGGVKNHYYSVC
VCVCVFCFFVFVLFCEFWSSTPFCPFGGKNCATSQIDDEKCAVVVCPEDG
RSGKNGRPQVSAENTAKSWYHIKKNGEK*
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mRNA from alignment at F-serratus_M_contig105:146299..146898+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig105.502.1 ID=mRNA_F-serratus_M_contig105.502.1|Name=mRNA_F-serratus_M_contig105.502.1|organism=Fucus serratus male|type=mRNA|length=600bp|location=Sequence derived from alignment at F-serratus_M_contig105:146299..146898+ (Fucus serratus male)
CCCCCTAAAAAAACAAGCAAAAAAACACACAGGAAAACCCTAGATTGTTG
GGGGTTCAGGATGTTCCGAAACGTATATACTCTATCGTATTGTCTTGTTT
GTTCAGCGGACTTTTTAATTGTCAGTTTCAAAATGCGATTTTTTCTAGAG
CTACAAGTATGTGTCCGCGTTATGCGTGGCGGTGTCAAAAATCATTATTA
TAGTGTATGCGTATGTGTGTGTGTTTTTTGTTTTTTTGTTTTTGTTTTAT
TTTGTGAGTTTTGGTCCTCTACCCCTTTTTGCCCTTTCGGCGGGAAAAAT
TGCGCCACTTCGCAAATAGATGATGAGAAATGCGCTGTTGTTGTGTGCCC
GGAGGACGGGAGGTCGGGAAAAAACGGGCGACCGCAAGTTTCCGCAGAGA
ATACTGCCAAGAGTTGGTACCATATTAAAAAAAATGGTGAAAAATAATAT
ATGAAAAAGGGTAACATACAGTACTGCTCGAGGGACAGCGGCAGATCGGC
ATCGTGTGGGGAACTCCCCGTCTTCGCTTAGAGCGAGCGCACTCTCCTCA
TGATTGATTTGATTTTATTGGCCAAAATCGAGTTCTTACGACTTTTTTCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig105:146299..146898+

>mRNA_F-serratus_M_contig105.502.1 ID=mRNA_F-serratus_M_contig105.502.1|Name=mRNA_F-serratus_M_contig105.502.1|organism=Fucus serratus male|type=CDS|length=774bp|location=Sequence derived from alignment at F-serratus_M_contig105:146299..146898+ (Fucus serratus male)
ATGTTCCGAAACGTATATACTCTATCGTATTGTCTTGTTTGTTCAGCGGA
CTTTTTAATTGTCAGTTTCAAAATGCGATTTTTTCTAGAGCTACAAGTAT
GTGTCCGCGTTATGCGTGGCGGTGTCAAAAATCATTATTATAGTGTATGC
GTATGTGTGTGTGTTTTTTGTTTTTTTGTTTTTGTTTTATTTTGTGAGTT
TTGGTCCTCTACCCCTTTTTGCCCTTTCGGCGGGAAAAATTGCGCCACTT
CGCAAATAGATGATGAGAAATGCGCTGTTGTTGTGTGCCCGGAGGACGGG
AGGTCGGGAAAAAACGGGCGACCGCAAGTTTCCGCAGAGAATACTGCCAA
GAGTTGGTACCATATTAAAAAAAATGGTGAAAAATAAATGTTCCGAAACG
TATATACTCTATCGTATTGTCTTGTTTGTTCAGCGGACTTTTTAATTGTC
AGTTTCAAAATGCGATTTTTTCTAGAGCTACAAGTATGTGTCCGCGTTAT
GCGTGGCGGTGTCAAAAATCATTATTATAGTGTATGCGTATGTGTGTGTG
TTTTTTGTTTTTTTGTTTTTGTTTTATTTTGTGAGTTTTGGTCCTCTACC
CCTTTTTGCCCTTTCGGCGGGAAAAATTGCGCCACTTCGCAAATAGATGA
TGAGAAATGCGCTGTTGTTGTGTGCCCGGAGGACGGGAGGTCGGGAAAAA
ACGGGCGACCGCAAGTTTCCGCAGAGAATACTGCCAAGAGTTGGTACCAT
ATTAAAAAAAATGGTGAAAAATAA
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