mRNA_F-serratus_M_contig105.495.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig105.495.1
Unique NamemRNA_F-serratus_M_contig105.495.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig105.495.1 vs. uniprot
Match: A0A7S2S4S3_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S4S3_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.540e-17
Identity = 65/188 (34.57%), Postives = 97/188 (51.60%), Query Frame = 1 
Query:  433 DVVQITTENYTETIKQGT-WFVKFYTDWCSHCKQLQPTWEELAKDL-------KGKVRVGQVNCETDRALCSRFHVKGYPTLVHIHNRKCRVYKLKSRSKGALIDFAEKGYAKTAAISALKSPFGPIESVKARLVEAIILSRKFVLEQVASGTP-IWLLCIYAVGGLVVMTTAVSLI-LVATKRPKQD 966
            +VV +   ++  +I+ G  W ++FY  WC HC +  PT+E +AK L       + KV V +V+   DRAL SRF+V+G+PT   I     R Y  K R++ AL  FA K Y +   I  L SPFGP+   +A L+     +  +    V  G P I+     A  G+V   TA+ +I  +   +PK+D
Sbjct:   32 EVVDLDARSFDSSIRDGNAWLIEFYAPWCGHCTRFAPTYEAVAKQLHENQSTSERKVMVAKVDGGGDRALASRFNVRGFPTFYLIDGWTVREYTGK-RTQDALFQFATKTYEEYEPIPFLNSPFGPMGQSRALLMRVGTKTIDYHASMVKRGYPSIFAAITLAAFGIVFGLTAILVIGFMTLPKPKED 218
[Close]
BLAST of mRNA_F-serratus_M_contig105.495.1 vs. uniprot
Match: A0A178DWG9_9PLEO (Thioredoxin-domain-containing protein n=1 Tax=Pyrenochaeta sp. DS3sAY3a TaxID=765867 RepID=A0A178DWG9_9PLEO)

HSP 1 Score: 96.7 bits (239), Expect = 1.640e-17
Identity = 40/86 (46.51%), Postives = 58/86 (67.44%), Query Frame = 1 
Query:  487 WFVKFYTDWCSHCKQLQPTWEELAKDLKGKVRVGQVNCETDRALCSRFHVKGYPTLVHIHNRKCRVYKLKSRSKGALIDFAEKGYA 744
            WF+KFY  WC HC+ L PTWE LA+ ++GK+ +GQVNC+ ++ALC   HV+GYPT++     + R+     R  G L+D+A+K  A
Sbjct:  264 WFIKFYAPWCHHCQALAPTWENLARQMRGKLNIGQVNCDAEKALCKEAHVRGYPTMLFFRGSE-RIEYEGLRGIGDLLDYADKATA 348
[Close]
BLAST of mRNA_F-serratus_M_contig105.495.1 vs. uniprot
Match: A0A2B7YSN2_9EURO (Protein disulfide-isomerase domain n=1 Tax=Polytolypa hystricis UAMH7299 TaxID=1447883 RepID=A0A2B7YSN2_9EURO)

HSP 1 Score: 96.7 bits (239), Expect = 1.710e-17
Identity = 45/101 (44.55%), Postives = 64/101 (63.37%), Query Frame = 1 
Query:  439 VQITTENYTE--TIKQGTWFVKFYTDWCSHCKQLQPTWEELAKDLKGKVRVGQVNCETDRALCSRFHVKGYPTLVHIHNRKCRVYKLKSRSKGALIDFAEK 735
            V +T E++ +  T  +  WF+KFY  WC+HC+ L PTW ++AK++KG + VG+VNCET+R LC   HV  YPT+ H      RV     R  G LI++A+K
Sbjct:  269 VPLTAESFQKLVTATRDPWFIKFYAPWCTHCQSLAPTWRQMAKEMKGSLNVGEVNCETERRLCKDAHVNSYPTM-HFFRGGERVEYEGHRGLGDLINYAKK 368
[Close]
BLAST of mRNA_F-serratus_M_contig105.495.1 vs. uniprot
Match: A0A2K1QIC7_9PEZI (Uncharacterized protein n=1 Tax=Sphaceloma murrayae TaxID=2082308 RepID=A0A2K1QIC7_9PEZI)

HSP 1 Score: 96.7 bits (239), Expect = 1.720e-17
Identity = 42/99 (42.42%), Postives = 64/99 (64.65%), Query Frame = 1 
Query:  445 ITTENYTE--TIKQGTWFVKFYTDWCSHCKQLQPTWEELAKDLKGKVRVGQVNCETDRALCSRFHVKGYPTLVHIHNRKCRVYKLKSRSKGALIDFAEK 735
            +T E++    T  +  WF+KFYT WC HC+ L PTW  +A+D+KGK+ +G+V+CE ++ LC   HV+GYPTL++    + R+     R  G L++FA K
Sbjct:  264 LTAEDFQSKVTTTRDPWFIKFYTKWCPHCQALAPTWHSMARDMKGKLNIGEVDCEVEKRLCKDVHVQGYPTLLYFQGGE-RIEYSGLRGLGDLLNFASK 361
[Close]
BLAST of mRNA_F-serratus_M_contig105.495.1 vs. uniprot
Match: A0A4T0CE66_AURPU (Thioredoxin-like protein n=1 Tax=Aureobasidium pullulans TaxID=5580 RepID=A0A4T0CE66_AURPU)

HSP 1 Score: 95.9 bits (237), Expect = 2.630e-17
Identity = 46/117 (39.32%), Postives = 67/117 (57.26%), Query Frame = 1 
Query:  391 KGDKAAEDFETAGSDVVQITTENYTE--TIKQGTWFVKFYTDWCSHCKQLQPTWEELAKDLKGKVRVGQVNCETDRALCSRFHVKGYPTLVHIHNRKCRVYKLKSRSKGALIDFAEK 735
            K  K A++        V +T E + +  T     WF+KFY  WC HC+ + P+W  +A+D+KGK+ VG+VNCE +R LC   +VKGYPTL++    + R+     R  G LI +A K
Sbjct:  273 KATKIAKETANPAGTSVPLTAETFQQRVTTTHDPWFIKFYAPWCHHCQAMAPSWHAMARDMKGKLNVGEVNCEVERRLCKDVNVKGYPTLIYFQAGE-RIEYEGLRGLGDLISYASK 388
[Close]
BLAST of mRNA_F-serratus_M_contig105.495.1 vs. uniprot
Match: A0A4V1IW28_9FUNG (Thioredoxin domain-containing protein n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4V1IW28_9FUNG)

HSP 1 Score: 95.5 bits (236), Expect = 2.680e-17
Identity = 35/72 (48.61%), Postives = 51/72 (70.83%), Query Frame = 1 
Query:  439 VQITTENYTETIKQGTWFVKFYTDWCSHCKQLQPTWEELAKDLKGKVRVGQVNCETDRALCSRFHVKGYPTL 654
            ++++  ++   I  G WF+KFY  WC HC+ L P W++L+  LKG+V VG VNC+ ++ LCSRF V+GYPTL
Sbjct:  138 IELSISSFDAMISHGPWFIKFYAPWCGHCQHLAPVWDQLSLKLKGQVNVGSVNCDVEKGLCSRFEVRGYPTL 209
[Close]
BLAST of mRNA_F-serratus_M_contig105.495.1 vs. uniprot
Match: M2R881_COCSN (Uncharacterized protein n=7 Tax=Bipolaris TaxID=33194 RepID=M2R881_COCSN)

HSP 1 Score: 95.9 bits (237), Expect = 2.990e-17
Identity = 44/105 (41.90%), Postives = 64/105 (60.95%), Query Frame = 1 
Query:  436 VVQITTENYTETIKQGT--WFVKFYTDWCSHCKQLQPTWEELAKDLKGKVRVGQVNCETDRALCSRFHVKGYPTLVHIHNRKCRVYKLKSRSKGALIDFAEKGYA 744
            V  +T +N+ + +      WF+KFY  WC HC+ L PTW  LA+ +KGK+ +G+VNC+ ++ LC   HVKGYPT++     + RV     R  G L+D+AEK  A
Sbjct:  264 VTILTADNFDKHVVSTLEPWFIKFYAPWCHHCQALAPTWANLARQMKGKLNIGEVNCDVEKKLCKEAHVKGYPTMLFFRGGE-RVEYHGLRGLGDLLDYAEKAAA 367
[Close]
BLAST of mRNA_F-serratus_M_contig105.495.1 vs. uniprot
Match: A0A074XXA7_AURPU (Thioredoxin-like protein n=28 Tax=Aureobasidium TaxID=5579 RepID=A0A074XXA7_AURPU)

HSP 1 Score: 95.9 bits (237), Expect = 3.070e-17
Identity = 46/117 (39.32%), Postives = 67/117 (57.26%), Query Frame = 1 
Query:  391 KGDKAAEDFETAGSDVVQITTENYTE--TIKQGTWFVKFYTDWCSHCKQLQPTWEELAKDLKGKVRVGQVNCETDRALCSRFHVKGYPTLVHIHNRKCRVYKLKSRSKGALIDFAEK 735
            K  K A++        V +T E + +  T     WF+KFY  WC HC+ + P+W  +A+D+KGK+ VG+VNCE +R LC   +VKGYPTL++    + R+     R  G LI +A K
Sbjct:  273 KATKIAKETANPAGTSVPLTAETFQQRVTTTHDPWFIKFYAPWCHHCQAMAPSWHAMARDMKGKLNVGEVNCEVERRLCKDVNVKGYPTLIYFQAGE-RIEYEGLRGLGDLISYANK 388
[Close]
BLAST of mRNA_F-serratus_M_contig105.495.1 vs. uniprot
Match: A0A8H5DCD7_9HYPO (Uncharacterized protein n=1 Tax=Fusarium sp. NRRL 66182 TaxID=2692428 RepID=A0A8H5DCD7_9HYPO)

HSP 1 Score: 95.9 bits (237), Expect = 3.100e-17
Identity = 42/98 (42.86%), Postives = 63/98 (64.29%), Query Frame = 1 
Query:  445 ITTENYTETI--KQGTWFVKFYTDWCSHCKQLQPTWEELAKDLKGKVRVGQVNCETDRALCSRFHVKGYPTLVHIHNRKCRVYKLKSRSKGALIDFAE 732
            +T EN+   +   +  WF+KFY  WCSHCK + PTWE+LAK++KGK+ +G+VNCE D  LC++  VK +PT++ +   +   YK   R  G  + +AE
Sbjct:  305 LTPENFDRLVTNSKDPWFIKFYAPWCSHCKAMAPTWEQLAKNMKGKLNIGEVNCEADHKLCTQMGVKAFPTILFMTGPERAEYK-GLRGVGDFVAYAE 401
[Close]
BLAST of mRNA_F-serratus_M_contig105.495.1 vs. uniprot
Match: A0A2S7QXD1_9HELO (Disulfide isomerase protein n=3 Tax=unclassified Rutstroemia TaxID=2684950 RepID=A0A2S7QXD1_9HELO)

HSP 1 Score: 95.9 bits (237), Expect = 3.140e-17
Identity = 47/120 (39.17%), Postives = 70/120 (58.33%), Query Frame = 1 
Query:  382 VQGKGDKAAEDFETAGSDVVQITTENYTE--TIKQGTWFVKFYTDWCSHCKQLQPTWEELAKDLKGKVRVGQVNCETDRALCSRFHVKGYPTLVHIHNRKCRVYKLKSRSKGALIDFAEK 735
            VQ K  K + +   AG+ V  +T E++    T+ Q  WF+KFY  WC HC+ + P W +LAK++KGK+ +G+VNCE +  LC   H++GYPT++     + RV     R  G  + FA K
Sbjct:  300 VQKKPSKPSSNANPAGTSV-PLTAESFQNLVTMSQDPWFIKFYAPWCHHCQAMAPNWAQLAKEMKGKLNIGEVNCEAESRLCKDVHLRGYPTILFFRGGE-RVEYEGLRGLGDFVSFANK 417
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig105.495.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2S4S3_9STRA1.540e-1734.57Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A178DWG9_9PLEO1.640e-1746.51Thioredoxin-domain-containing protein n=1 Tax=Pyre... [more]
A0A2B7YSN2_9EURO1.710e-1744.55Protein disulfide-isomerase domain n=1 Tax=Polytol... [more]
A0A2K1QIC7_9PEZI1.720e-1742.42Uncharacterized protein n=1 Tax=Sphaceloma murraya... [more]
A0A4T0CE66_AURPU2.630e-1739.32Thioredoxin-like protein n=1 Tax=Aureobasidium pul... [more]
A0A4V1IW28_9FUNG2.680e-1748.61Thioredoxin domain-containing protein n=1 Tax=Tham... [more]
M2R881_COCSN2.990e-1741.90Uncharacterized protein n=7 Tax=Bipolaris TaxID=33... [more]
A0A074XXA7_AURPU3.070e-1739.32Thioredoxin-like protein n=28 Tax=Aureobasidium Ta... [more]
A0A8H5DCD7_9HYPO3.100e-1742.86Uncharacterized protein n=1 Tax=Fusarium sp. NRRL ... [more]
A0A2S7QXD1_9HELO3.140e-1739.17Disulfide isomerase protein n=3 Tax=unclassified R... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig105contigF-serratus_M_contig105:31209..39300 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score228.8
Seed ortholog evalue2.8e-57
Seed eggNOG ortholog2880.D8LKF4
KEGG koko:K13984
KEGG Pathwayko04141,map04141
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003756,GO:0003824,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005788,GO:0005789,GO:0005793,GO:0005829,GO:0006457,GO:0006464,GO:0006807,GO:0006810,GO:0006897,GO:0006909,GO:0006950,GO:0006986,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009987,GO:0010033,GO:0012505,GO:0015036,GO:0015037,GO:0016020,GO:0016192,GO:0016491,GO:0016667,GO:0016853,GO:0016860,GO:0016864,GO:0019538,GO:0023052,GO:0030968,GO:0031974,GO:0031984,GO:0032991,GO:0033554,GO:0034620,GO:0034663,GO:0034976,GO:0035966,GO:0035967,GO:0036211,GO:0036498,GO:0042175,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043277,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044421,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0055114,GO:0065007,GO:0070013,GO:0070887,GO:0071310,GO:0071704,GO:0098657,GO:0098827,GO:0140096,GO:1901564
EggNOG free text desc.cell redox homeostasis
EggNOG OGsCOG0526@1,KOG0191@2759
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-16_002760.1
COG Functional cat.CO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110,ko04131
Exons7
Model size1472
Cds size735
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928873.1259935-UTR-F-serratus_M_contig105:31208..314421622928873.1259935-UTR-F-serratus_M_contig105:31208..31442Fucus serratus maleUTRF-serratus_M_contig105 31209..31442 +
1690962609.3817356-UTR-F-serratus_M_contig105:31208..314421690962609.3817356-UTR-F-serratus_M_contig105:31208..31442Fucus serratus maleUTRF-serratus_M_contig105 31209..31442 +
1622928873.2131894-UTR-F-serratus_M_contig105:38755..390141622928873.2131894-UTR-F-serratus_M_contig105:38755..39014Fucus serratus maleUTRF-serratus_M_contig105 38756..39014 +
1690962609.4573038-UTR-F-serratus_M_contig105:38755..390141690962609.4573038-UTR-F-serratus_M_contig105:38755..39014Fucus serratus maleUTRF-serratus_M_contig105 38756..39014 +
1622928873.2227838-UTR-F-serratus_M_contig105:39056..393001622928873.2227838-UTR-F-serratus_M_contig105:39056..39300Fucus serratus maleUTRF-serratus_M_contig105 39057..39300 +
1690962609.4662063-UTR-F-serratus_M_contig105:39056..393001690962609.4662063-UTR-F-serratus_M_contig105:39056..39300Fucus serratus maleUTRF-serratus_M_contig105 39057..39300 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928873.1367636-CDS-F-serratus_M_contig105:31442..316791622928873.1367636-CDS-F-serratus_M_contig105:31442..31679Fucus serratus maleCDSF-serratus_M_contig105 31443..31679 +
1690962609.3939102-CDS-F-serratus_M_contig105:31442..316791690962609.3939102-CDS-F-serratus_M_contig105:31442..31679Fucus serratus maleCDSF-serratus_M_contig105 31443..31679 +
1622928873.148457-CDS-F-serratus_M_contig105:36176..362201622928873.148457-CDS-F-serratus_M_contig105:36176..36220Fucus serratus maleCDSF-serratus_M_contig105 36177..36220 +
1690962609.4055405-CDS-F-serratus_M_contig105:36176..362201690962609.4055405-CDS-F-serratus_M_contig105:36176..36220Fucus serratus maleCDSF-serratus_M_contig105 36177..36220 +
1622928873.1587574-CDS-F-serratus_M_contig105:37210..372711622928873.1587574-CDS-F-serratus_M_contig105:37210..37271Fucus serratus maleCDSF-serratus_M_contig105 37211..37271 +
1690962609.421133-CDS-F-serratus_M_contig105:37210..372711690962609.421133-CDS-F-serratus_M_contig105:37210..37271Fucus serratus maleCDSF-serratus_M_contig105 37211..37271 +
1622928873.1764805-CDS-F-serratus_M_contig105:37575..376891622928873.1764805-CDS-F-serratus_M_contig105:37575..37689Fucus serratus maleCDSF-serratus_M_contig105 37576..37689 +
1690962609.4306004-CDS-F-serratus_M_contig105:37575..376891690962609.4306004-CDS-F-serratus_M_contig105:37575..37689Fucus serratus maleCDSF-serratus_M_contig105 37576..37689 +
1622928873.19022-CDS-F-serratus_M_contig105:38078..382601622928873.19022-CDS-F-serratus_M_contig105:38078..38260Fucus serratus maleCDSF-serratus_M_contig105 38079..38260 +
1690962609.4396925-CDS-F-serratus_M_contig105:38078..382601690962609.4396925-CDS-F-serratus_M_contig105:38078..38260Fucus serratus maleCDSF-serratus_M_contig105 38079..38260 +
1622928873.2016914-CDS-F-serratus_M_contig105:38658..387551622928873.2016914-CDS-F-serratus_M_contig105:38658..38755Fucus serratus maleCDSF-serratus_M_contig105 38659..38755 +
1690962609.4488287-CDS-F-serratus_M_contig105:38658..387551690962609.4488287-CDS-F-serratus_M_contig105:38658..38755Fucus serratus maleCDSF-serratus_M_contig105 38659..38755 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig105.495.1prot_F-serratus_M_contig105.495.1Fucus serratus malepolypeptideF-serratus_M_contig105 31443..38755 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig105.495.1

>prot_F-serratus_M_contig105.495.1 ID=prot_F-serratus_M_contig105.495.1|Name=mRNA_F-serratus_M_contig105.495.1|organism=Fucus serratus male|type=polypeptide|length=245bp
MSVIVFPRLRRGSSSCAGKFLLGALLLLVTVAACLGAAVVGSGGGVEGIV
QGKGDKAAEDFETAGSDVVQITTENYTETIKQGTWFVKFYTDWCSHCKQL
QPTWEELAKDLKGKVRVGQVNCETDRALCSRFHVKGYPTLVHIHNRKCRV
YKLKSRSKGALIDFAEKGYAKTAAISALKSPFGPIESVKARLVEAIILSR
KFVLEQVASGTPIWLLCIYAVGGLVVMTTAVSLILVATKRPKQD*
back to top

mRNA from alignment at F-serratus_M_contig105:31209..39300+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig105.495.1 ID=mRNA_F-serratus_M_contig105.495.1|Name=mRNA_F-serratus_M_contig105.495.1|organism=Fucus serratus male|type=mRNA|length=8092bp|location=Sequence derived from alignment at F-serratus_M_contig105:31209..39300+ (Fucus serratus male)
CAAGTTTACAGTGTTTGTGCGGATATAGAAAGAGTTCCATCTCGACCAAA
GAGCGATCTACAAACGGGATAAATAAAATATTGGTGATACTGTTATTATT
GGTCCAGGTATCCATTAGATTGCTACACTGTTGTACTTCGCGAAATCGAG
GTAGAGACGTTTTTACCGCACGCTCGCTCGAGAAAGTAATCTCCCGAAGA
CTTGAGGGTGTTTAAAGAATTCGTGAATTCTACTATGAGTGTAATCGTAT
TTCCGCGATTAAGACGCGGCAGCTCTTCTTGTGCAGGGAAGTTCTTGCTC
GGCGCGCTCCTCCTGTTGGTGACTGTCGCTGCTTGCCTGGGCGCGGCTGT
GGTCGGAAGCGGTGGAGGCGTGGAGGGAATAGTACAGGGCAAGGGCGACA
AGGCAGCGGAAGATTTCGAGACTGCGGGCAGCGATGTCGTCCAGATTACT
ACGGAAAATTATACCGAGACGGTGAGAACTTGTGGGTCGTCCTCTATCTA
CCTTACTGCTGAACTTACGTTTGCTCTGCTAACCCATACATTTTTGCCTG
CTGCCAATGCCCTAACCCGATCCCAAACCCGATACTTGTACATACTCCGA
GTACTAATCATAACATAGCTGAGACATATCCAGGTAGGTTCCTTGGTCCT
TGTTTGCCTCTGTTTTTCGGGTTTTGGTGTACCTGCAAGGCGATTGATGT
ACCATAACGGTGGGTTCCTCCTCGACATTACACTGTTGACGCTATGCTAC
TATTACCATCGGGGAACCCATTATGTAGAGTACCTAAATGTTTAGACAAT
CTTCCCCCTTGTTGAGAGGACGCTCAGAAGGTTTAGATGTGCATTCAGCT
TTTTCTTGGTTTACTTTTATTCAGATCCATACGTTGCTATGTGCCCGGTC
GCCCCGTTAGCTCAGAGGTAACCCGTAACCTTCTGACACGTTGGGACGTG
AGTTCGAATCCCGGTAGTCGGTATTTTTCTCACTAAAAAGTTAAAAATAA
TTAAAAATAAAAGTGCCCAACAAGTGGAGAACGATTAAATCGTTAGTACA
CAAAATACGACTTCACGGTCGACGAGGGAAAGGAATGGCGGGATCCTCCT
CGCGAGAAAAAATAAGGCACGCACCGCAGAGAGAACGTAGATGAGAAACC
CTTTGTGACCGTCTCCCTGTGTGACCCCGGCTGATACGTCCAACGAACTT
CATGTCCAGAAGAAAGGGTAAGAAAACACACACACACACACATATCATTG
ATCCCCCCTCGGGAGGATCAATGCGAGCGGCATAGAATAACTATTAATAG
GATGACAGGGCCGGATTGCGCGGTTATGTGCAATTTAATAAATACACACT
CACACACAGGGCCGGATTGCGTGGTTATGTGTTTGTGTGTGTTTTCTTCC
CATCCATTCTGGACATCAAGTTGGATGTACCAGTCGGGGTCACACAGGAG
GAAGGTCACACAGGATTTTTCATCCACCTTCCTTCTGCGGTGCGTGCCTT
GATTTTTGTCGCGAGAAGGATTCAGCCATTCCTTTCCCTCGTCGACCGTG
AAGTCGAATTTTTTTTGTGTACTAACGAATTAATCGTTCTCCACCCGTTG
GGCATTTTTATTTTGGTTTTTTAGTTTTTAGTGAGAAAAATCCCGTTTGC
CGGGATCGAACTCACGTCCCAACGTGTCAGAAGGTTACGAGGTGCCTACT
GAGCTACCGGGGTCGACCGGCTTTGCAATTTAATAAATACACACACACAC
ACACACACACACATATGTAACCTAGAGTCAAACCAGTGTAATATCGAGGA
GAAATGCGCCGCTGATACACTCTCCAAGAGGAAAGACGAGGTATTTATGT
ACTAGATGGCAGGGAGCTGGTGTTATTTTTTTATTTTTTTTACAAAATAT
GACTCCTCCGAAAAGGTGGTGCAGACAGTACTCGTAAAAGCCAGGGGTCT
TCACGGTTTCAAAACCGCGGTACATAACCGCGGTTAAACCGTGCCGTTTA
CAAACCGCGATTTTTCAGAACCATAACCGTGGACCGTTAACGAACCGTGA
AAATTTACAAAAACCGGCATAAATCCCAAACCAAACCGAACCGAACCGTG
GTAACTGTAAACCGGACCGTTTAGAAACCGAGATATTATCCAAACCGCGG
TCATGCAGCCCATAAGGTATATATTGTATATTAAGTATTAATAGTTTATA
GTTTATACGAAGTGGGGACGTTATACAAAATACGATTAAACATACGGAAG
GACGTGAAGGACGTGTAATACCTACCTACATCAAAATATTAAATATTAAA
TACTAAATATTAACAGTTTATACGAAGCGCGTACATCATACGATTAACGA
TACGGAAGAAGAATATCCGGACGGACATTATACATACATCAGCACTGTGC
GTTGCGGAGAAGCCTTTCGGTACACGCGTAAGGACAGAAAGTTTTTTCGT
GAACCTAAGCAGAGCCTCACAAGTTAGAAGCGTGGTTTTGAGGTGCAGGA
TCTGCGGAGAGAGTCACGAGCATGAGCCAAAGCAATGATTCCCCTGCACC
TTGCGCGGATACTCTTCCTTCAGAAGCACGCGGACAGAAAGGAAGCCTCG
CAAAGGTAACTATAGTTGCTCCTCCGACGGGGAAAAGGAAAAGGAACTCA
TTCATGGGTGTGGAAAGTTATGCAACAATTCGAACCACCCATTAGGAAAT
GCTCCGTGCGGTGTTCGGTGGAGGTTTCCAAACGTGGAAAAACACAGCCG
TGCGGTGCCTTGTTCGCATGGAGTGGTTCATCGGGAACGTCAACACTCGC
AAGCCACATTAAAAGGGCACATCCCAGCGTGCATTCGGAAATTCGACGTG
TTTCGAAATGTCATGGAGGACAAGGACCTAGGAAGGGCTTTCAACCCAAC
TGAGCGCATCAGCGTCTTCCTCGATCCGAGGAGGAAGGTGATGTCCGAGG
ACGATTGCATTGGCGGTGGCAATGCGCTTCAAACGATGGCAATTTCGGAC
ATCGAAGAGCTCGGGCATCGCTTCGTCGGGAACGTCGCTCAGACGTCTAG
CAGGACACCAGCCCCTGCACCAGCCCCAGCCCCTGCGCCAGCCCCTGCGC
CAGCCCCTGCGCCAGCTCCCGGGTTGGCGACTCCAGCCGTAACTTTGCCG
CGGGTGTCCTCAGTCATGGAGCAAAGACGTCTAGCCCGATTGGCTGCATC
TGGACATGGAAGTAGTTCCCATGGGGCACAGGGGGGAGTACAACCTGTTA
CACACCACGTCGCCCTTCGACAGGAACTAAATAATTATCGAGGGCAAAAC
GTCGAGCCAGACGTGTGTGGCTTTTCGCTGCCAGGTTTTTGGCTCCGCAA
GAGCGAGTCGACGCTTGCTCAGGGCACGGGCGAGGTTGTGGCGCCACCGG
ATCTGCCCCATTTAGCACTCCTTGCCCATCTTTACCACGGGGTCGAAGCG
ACCAGTTGCCAAGCCGAGCGCAACTTTTCTGCGCTGCCGTTTTTGATTGG
TACTTTGCGGGCAAGCATGAGTCCGTTTAAGGTGGAACAAATGATGTTTC
TGAAGTTGAACCAGGGATGCCTACCGGAGGTTCAAAGGTACAACGCCACC
ATTGCTGCGTAGCAAGAAAGACGCAGCCAATGCCTCAACGATGTGCAATC
GGCACAAGAGGCGGCTGCCGGGGAGACGGTGGATATAGAACTATAGAAGA
GTTGTTACGTAGCGGTGGATGCATGGGAGATGTCGCAGTTCAGGAAGGAA
GATTTTGAGAGCAAACCGAACCGAAACCGAACCGCAGACTTAACCTGGAA
TCGAAAACCGGACCGTAACCGAACCGCAGAATTAGCCAGGAACCGTAAAC
CGGACCGCAGCAAACCGAGGTTTTCCGGAACCATCCATGCTCCAACCGCG
ATAATGTGAAAACCATAACCGCGAACCATTTGTAACCGTGGTTCTTGGAA
ACCATAACCATCTGTACCGAACAAAAAAAGTGTACCGTGAAGAGCCCTGG
TAAAAGCCTTGCTTGCTTTCCTCCGTTGCTGTCGGCGATCGTTCAAAGGA
TCTCCGTGATAATGTGCGCCATGCAACCAAAAAGGTATCAGTAGTACTAC
AGTACCTGCTGTAGCTCTACGATGTTGTGCAGGACCAAATCTGGGATCTC
AGTATTATGATGTACCGGTATTAATAGTATGAAAAGCTGTACCCACCTGA
ACCTCTCCATGTGTTGGCGAGATTCTTGTTTTTGTGCAGAGTTTCGGAGA
AAAAAATCTGAACGCATCGAAACCACCTTCCGAGCATGAACACTATTAAT
ACATGTATCCGTGGGAGTTGCCATTAATAGTGTCGAAATATTTTCTCTGG
GGACGTAAAATATTATTCATATTAATAGTGCAAAAACTCCACTCGGGATC
TCGTCGGGTTCCGTTCTGTTGGCACAATTTGGGCTCTTGAGTTGCCACGT
GTATGTGTGTGTGGGGGGGGGGGGGGGGGGGGGGATCGTAATTTGCCGGA
TGGGACCGTTCAGAGCGCAATGTTACAAATCCCACTCTACCGCAACGCCG
TTATTCCCGCCTACCATGGTCTTGAGGGATCTATCGACCGAGTTCCACAC
GCGTACGCTTTCCATTCCCTTTTCAATTTCTAGACCTCAACAAGAGCCTT
GTAATGTTGGAGGCTTGCTTGCTCGCGCGTTTTCCCCCACAACCGCCAAC
AACTGGCGCACGCGTAACAGCAGCAAAATTTCCCGAGATTGGAACTCCCA
GCACCACTCTAGAGCGTTTTATGTGGATTACCAGGTAGATGGGCGGTCAC
ACACTCTAGAGCTCTCTTAACAACAAAAGCATTACCGTCGACGCGACTGG
ATGGCTCTCTGGCTATCCCCCATATAGCTCTAGGTCTTAACTTTCTCCCC
GCCTGCCCTACTCCCGTGTGTGGCCTCACATGCGTTCCCGGTAACTTTTT
ATATGCCCTTGATCACAGATAAAGCAGGGCACCTGGTTCGTCAAGTTCTA
CACGGATTGGTGGTGAGTTTATTTTATGACTTCGTAACTACTATGATATA
TCGCTACAGAACGGTAGCTTTTCTTTCTTTTTTATTTATTCAAGTAATTT
CTGCTAAAAATAACTGCACCTAACTCTCCACCCTGAATTATTTGTCTTCC
AGTAACAAAAGTGGTTCGTATGTGTTACGTCCTTGTCGACTTACTTCACA
AACAGAAGCGTGTAGCCAGATTCAACCTCGGCGTTATATTGCTCTCATTC
AGTTAGTTGCGTTTCATGCCGGAAGTATTTCATCCGAATACATGCGTCCT
TTTTATGGCCGAACTACTTATTGTCCATACTGTTAATAGTTTATCTGAAC
GTCTTATCTATCAGGAGGTATGCTACCTGTAGCATGTAGTTCCTAGTCCC
TGTCGGCTGCCCAGCGGGAATAATCCCCTCGTCTTTCCATTTAAATATCA
CGTCGAAGAAAGCGAGGTTGGATCGTAGGAGCTGGTGCGTAGTTTGTACC
TCCAGAAACACAGCTCGCGCTCCCTCACAAGTAGGAGGCGTGTCTTGTAA
TTATATATATATATAAGAGATTCTGTGGAGTTCTTAGGATTAAGGCTCTC
TAGAGTGCGTCTACTTGAGGTCCCTCCTTGTAAATCAATAATGCGAGAGG
GCAGTGCTGGGTCGCAGCTCTCGATGTTGTCCCATGCCCCATTTTTTCCG
TGGATCTCTGGGGTTATCGTACTTGTGCTGCCCCGACAAAAAAAGGCGGC
AAAATGACCTTGCGACAACTAACTGCCTCTTGGATCACGTATGTATGCGG
ACGAATCAACGTTCTTGCTCGAATTGTAGTACTTTATGAACGTGGATCGC
GAGAGCGATTTGTACAGATTTACCCCCCCCCCTCCCCATCCCCATATCCC
CTGTAGAACAAAAACAAATCAAAACATTATTACACATTGTCTGACAAAAA
AACGCAACTTTTTTTTCTTCTATCTCATGCTACGCGCGAAACCAAATCAA
AGCTCACACTGCAAGCAACTTCAGCCGACTTGGGAGGAGCTGGCCAAGGA
TCTCAAGGGAAAGGTCTGCGAAAATGTTGGGTTCTGGATCGTATATCGCC
TTTTGTGGGTTTTGGGACTATGATAGATGTATTCAACGGGGCTATTATGA
TGTCTCACTGAAGAACGACGACTCGGTGCCTGCGTCGAGCTCGCTATCTC
CTTCCGCTATGCTCGTCCGCACACCGTGGGACGACAACGGCTAACTCTCG
AATCGTTTCATGAGCCAAAATCCGTAACAATGTTTGGTTGCCTTACCCAA
GTCCCGTCGGTTGAGTGGCGGAGGTGACGTTCGTATCCGGCGCCCCCCTA
TTGGAAATTCCCCCAAGGTGCGGGTGGGTCAGGTCAACTGCGAGACGGAC
AGAGCGCTTTGCAGTCGCTTTCACGTCAAGGGATATCCAACCCTGGTTCA
CATTCACAATCGCAAGTGCCGCGTGTACAAGGTAAGCGGTCTGGTCTCTC
TAGTGACGAATAGGTCTACATCAGGGTAAGCCGGCCGCGTCGGACCAAAA
CGCGTGCGCCATTCGACGCATGTCCTGGCCAGCTCAGACGGGCAACACGT
TTTGCAAGGGGTTCTAAACAGGAACACAGGCCAGCAGGTGGCACCAAGTG
GTTGCGGCATTCCGTGATTGAAAGCGAGGGTTCGCGGGAGAGAGTAGGCC
ATCGGTAATGCCGATTGAATTGCGGCCTCTCCTGCGCTGCTTGCTTGGTG
GCACACGACTTCTGTTTGTTCGTTTTTGTGCCCCGTAAGCCTCTCAGGGG
TCTCCCTCACCCTCATTTTTGACCCGCGAATCGTCTGATCCCTCAACACG
TGGGTTGCGTGAATCCGCAGCTAAAATCGCGTTCCAAGGGTGCCTTGATC
GACTTTGCGGAGAAGGGGTACGCGAAGACGGCGGCGATATCCGCGTTGAA
GTCTCCCTTCGGACCTATCGAGAGCGTCAAGGCCCGTCTCGTGGAGGCCA
TCATACTCTCACGGAAGTTCGTCTTGGAACAAGTGGCATCGGGGACACCA
ATGTGAGTCCAACCGGTACAGGCACATCTTTTTTTCACCGGTGGGGGGGG
GCGTGCAAGAGTGAGGAAGAGCTTTTTTGCTTTAAATGCGTCGACCGACG
CTCGCCCCGCTGCGTGTGCAGCAGAACAAGGGTATGTCAAGTGGGCATGA
CCACGTCCTTTTTTCGCGGCGATGGCTGTAGAGAGCATCAGACGGGCGTG
TGCAGCAGCCACTTGGTGACGAGAGGCTTGAGGTCGCTCGATGAGATATC
CGTGCACGAACGGCGTCGAAGAGACCGCCCGCACTCAAGAAAACATATCC
CGTTTTATATTGGTTTCAGTATGTAACCTCATCATCCCGCCCTCCCCACG
CCTTCGTCTTGACCAAAACTGCGAATCATGTGCATGCCGATATTACGTAG
ATGGTTATTGTGCATCTATGCCGTGGGCGGGCTTGTGGTTATGACGACTG
CCGTCTCATTAATCCTGGTGGCGACCAAGAGACCAAAACAAGATTGAAGG
AGTCGGGCGCTGGCGCAAGCAAGGTTTTGCAGGAATACTACGATCCCGTC
TTCTCGTCTTACGCTACGGTTATATATTTCAATGTGTTGTAGTACTGGTA
TTAAGTAGTAGTACTGTTCTATGTAAGGGGCATGAAGTTGTTGCTGGAAT
GTTACTGGGATGTAGATGTAGAGCTATTGATAGTAGGTAGTATGATGCGG
TGTGTCGGTGTACCGCAGGGGACGGTGAGAGTCACGACAATGGGGGGGGG
GGATGGGGATAAAAGCCCCCTCTCCCCTCTTCCGCACCTTAAGTTGACGG
CCGTGAGCAAGCTCCTCGTACGCACTTGACATTCGGCGAAACCTTCAGCC
ATCCGCATAATATATCGTTTGATTTCTGCGTAGATAGTCACGCCAGAAAA
TCGGGCGGACACACCAATCCCAAATCTTACAAAAGGTCCTTACCAAAACC
GTCGCCCCATCACCCACGGTGTGCCCTGACGCATGGCCTCCCGCGCCTTC
CTGAGAGCGAGTGCTGATGATGAAAAAGAGAGAAGACTCGTC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig105:31209..39300+

>mRNA_F-serratus_M_contig105.495.1 ID=mRNA_F-serratus_M_contig105.495.1|Name=mRNA_F-serratus_M_contig105.495.1|organism=Fucus serratus male|type=CDS|length=1470bp|location=Sequence derived from alignment at F-serratus_M_contig105:31209..39300+ (Fucus serratus male)
ATGAGTGTAATCGTATTTCCGCGATTAAGACGCGGCAGCTCTTCTTGTGC
AGGGAAGTTCTTGCTCGGCGCGCTCCTCCTGTTGGTGACTGTCGCTGCTT
GCCTGGGCGCGGCTGTGGTCGGAAGCGGTGGAGGCGTGGAGGGAATAGTA
CAGGGCAAGGGCGACAAGGCAGCGGAAGATTTCGAGACTGCGGGCAGCGA
TGTCGTCCAGATTACTACGGAAAATTATACCGAGACGATGAGTGTAATCG
TATTTCCGCGATTAAGACGCGGCAGCTCTTCTTGTGCAGGGAAGTTCTTG
CTCGGCGCGCTCCTCCTGTTGGTGACTGTCGCTGCTTGCCTGGGCGCGGC
TGTGGTCGGAAGCGGTGGAGGCGTGGAGGGAATAGTACAGGGCAAGGGCG
ACAAGGCAGCGGAAGATTTCGAGACTGCGGGCAGCGATGTCGTCCAGATT
ACTACGGAAAATTATACCGAGACGATAAAGCAGGGCACCTGGTTCGTCAA
GTTCTACACGGATTGGTGATAAAGCAGGGCACCTGGTTCGTCAAGTTCTA
CACGGATTGGTGCTCACACTGCAAGCAACTTCAGCCGACTTGGGAGGAGC
TGGCCAAGGATCTCAAGGGAAAGCTCACACTGCAAGCAACTTCAGCCGAC
TTGGGAGGAGCTGGCCAAGGATCTCAAGGGAAAGGTGCGGGTGGGTCAGG
TCAACTGCGAGACGGACAGAGCGCTTTGCAGTCGCTTTCACGTCAAGGGA
TATCCAACCCTGGTTCACATTCACAATCGCAAGTGCCGCGTGTACAAGGT
GCGGGTGGGTCAGGTCAACTGCGAGACGGACAGAGCGCTTTGCAGTCGCT
TTCACGTCAAGGGATATCCAACCCTGGTTCACATTCACAATCGCAAGTGC
CGCGTGTACAAGCTAAAATCGCGTTCCAAGGGTGCCTTGATCGACTTTGC
GGAGAAGGGGTACGCGAAGACGGCGGCGATATCCGCGTTGAAGTCTCCCT
TCGGACCTATCGAGAGCGTCAAGGCCCGTCTCGTGGAGGCCATCATACTC
TCACGGAAGTTCGTCTTGGAACAAGTGGCATCGGGGACACCAATCTAAAA
TCGCGTTCCAAGGGTGCCTTGATCGACTTTGCGGAGAAGGGGTACGCGAA
GACGGCGGCGATATCCGCGTTGAAGTCTCCCTTCGGACCTATCGAGAGCG
TCAAGGCCCGTCTCGTGGAGGCCATCATACTCTCACGGAAGTTCGTCTTG
GAACAAGTGGCATCGGGGACACCAATATGGTTATTGTGCATCTATGCCGT
GGGCGGGCTTGTGGTTATGACGACTGCCGTCTCATTAATCCTGGTGGCGA
CCAAGAGACCAAAACAAGATTGAATGGTTATTGTGCATCTATGCCGTGGG
CGGGCTTGTGGTTATGACGACTGCCGTCTCATTAATCCTGGTGGCGACCA
AGAGACCAAAACAAGATTGA
back to top