mRNA_F-serratus_M_contig1046.470.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1046.470.1
Unique NamemRNA_F-serratus_M_contig1046.470.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1046.470.1 vs. uniprot
Match: D7G2B2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2B2_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 1.640e-18
Identity = 61/87 (70.11%), Postives = 67/87 (77.01%), Query Frame = 1 
Query:  247 QGGACAYSGCRNGPSCPXXXXXXDSCDNPXXXXXXXXXXXXXXXXXXXXXXXXLDPKTTLRDGYCDGGGCVVNGRPFPSRFIGKLTV 507
            QGG C YS C +GPSCP       +C   XXXXXXXXXXXXXXXXXXXXXX  +DP +TLRDGYCDGG C VNG+PFPSRF GKL+V
Sbjct:    5 QGGGCGYSNCADGPSCPGGSCSFQNCRGXXXXXXXXXXXXXXXXXXXXXXXRVVDPLSTLRDGYCDGGACKVNGKPFPSRFAGKLSV 91
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BLAST of mRNA_F-serratus_M_contig1046.470.1 vs. uniprot
Match: A0A6U4L0H7_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4L0H7_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 8.430e-11
Identity = 66/157 (42.04%), Postives = 87/157 (55.41%), Query Frame = 1 
Query:   49 SRATLQSSSNERYSLSVVGDKMKTTWQRRRTSTAGRRSAGIVVI---AMIL--INTAVATALRPASCDFVCQGGACAYSGCRNGPSCPXXXXXXDSCDNPXXXXXXXXXXXXXXXXXXXXXXXXLDPKTTLRDGYCDGGGCVVNGRPFPSRFIGKLT 504
            S  ++  S N R S   +     +T +RRR      R    +++   A++L  I  A    L+   CD  C  G+C Y  C NGP+CP       +C +P XXXXXXXXXXXXXXXXXXXXX   +P+T L+DGYC G  C VNG+ +P RF   L+
Sbjct:   40 SALSVNGSQNPRTSSQGLRAAAASTQRRRRPDQRAMRVLSALLVWGAALLLGLIAPAQGGKLKEMDCDKPCTMGSCNYENCVNGPACPGGLCTFTNCVDPSXXXXXXXXXXXXXXXXXXXXXKIENPQTVLKDGYCRGTKCTVNGKAWPHRFSDTLS 196
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1046.470.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G2B2_ECTSI1.640e-1870.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6U4L0H7_9STRA8.430e-1142.04Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1046contigF-serratus_M_contig1046:199189..204772 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.5
Seed ortholog evalue2e-14
Seed eggNOG ortholog2880.D7G2B2
Hectar predicted targeting categorysignal peptide
EggNOG OGs2E3VX@1,2SAVN@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size532
Cds size399
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1046.470.1prot_F-serratus_M_contig1046.470.1Fucus serratus malepolypeptideF-serratus_M_contig1046 199211..204661 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928863.0838473-UTR-F-serratus_M_contig1046:199188..1992101622928863.0838473-UTR-F-serratus_M_contig1046:199188..199210Fucus serratus maleUTRF-serratus_M_contig1046 199189..199210 -
1690962606.3497245-UTR-F-serratus_M_contig1046:199188..1992101690962606.3497245-UTR-F-serratus_M_contig1046:199188..199210Fucus serratus maleUTRF-serratus_M_contig1046 199189..199210 -
1622928863.128653-UTR-F-serratus_M_contig1046:204661..2047721622928863.128653-UTR-F-serratus_M_contig1046:204661..204772Fucus serratus maleUTRF-serratus_M_contig1046 204662..204772 -
1690962606.3895662-UTR-F-serratus_M_contig1046:204661..2047721690962606.3895662-UTR-F-serratus_M_contig1046:204661..204772Fucus serratus maleUTRF-serratus_M_contig1046 204662..204772 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928863.0956428-CDS-F-serratus_M_contig1046:199210..1993771622928863.0956428-CDS-F-serratus_M_contig1046:199210..199377Fucus serratus maleCDSF-serratus_M_contig1046 199211..199377 -
1690962606.3607414-CDS-F-serratus_M_contig1046:199210..1993771690962606.3607414-CDS-F-serratus_M_contig1046:199210..199377Fucus serratus maleCDSF-serratus_M_contig1046 199211..199377 -
1622928863.1061182-CDS-F-serratus_M_contig1046:199925..2000191622928863.1061182-CDS-F-serratus_M_contig1046:199925..200019Fucus serratus maleCDSF-serratus_M_contig1046 199926..200019 -
1690962606.3682072-CDS-F-serratus_M_contig1046:199925..2000191690962606.3682072-CDS-F-serratus_M_contig1046:199925..200019Fucus serratus maleCDSF-serratus_M_contig1046 199926..200019 -
1622928863.1166365-CDS-F-serratus_M_contig1046:204523..2046611622928863.1166365-CDS-F-serratus_M_contig1046:204523..204661Fucus serratus maleCDSF-serratus_M_contig1046 204524..204661 -
1690962606.37634-CDS-F-serratus_M_contig1046:204523..2046611690962606.37634-CDS-F-serratus_M_contig1046:204523..204661Fucus serratus maleCDSF-serratus_M_contig1046 204524..204661 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1046.470.1

>prot_F-serratus_M_contig1046.470.1 ID=prot_F-serratus_M_contig1046.470.1|Name=mRNA_F-serratus_M_contig1046.470.1|organism=Fucus serratus male|type=polypeptide|length=133bp
MKTTWQRRRTSTAGRRSAGIVVIAMILINTAVATALRPASCDFVCQGGAC
AYSGCRNGPSCPGGACSFDSCDNPSCPGGNCDFLSCHNPVCGGGGCRFLD
PKTTLRDGYCDGGGCVVNGRPFPSRFIGKLTV*
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mRNA from alignment at F-serratus_M_contig1046:199189..204772-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1046.470.1 ID=mRNA_F-serratus_M_contig1046.470.1|Name=mRNA_F-serratus_M_contig1046.470.1|organism=Fucus serratus male|type=mRNA|length=5584bp|location=Sequence derived from alignment at F-serratus_M_contig1046:199189..204772- (Fucus serratus male)
TGTCACTCTTGATATAGAGCGAGCGTGATACACTTCGATAACGTGCACTC
TAGAGCTACCCTTCAAAGTTCTTCAAATGAGAGGTATTCTCTTTCAGTTG
TAGGTGATAAGATGAAAACAACTTGGCAGAGACGTCGAACAAGTACCGCG
GGAAGACGATCGGCTGGTATCGTAGTCATCGCAATGATCCTGATCAATAC
GGCGGTGGCAACGGCGCTGCGGCCTGCATCTTGCGATTTTGTATGTCAGG
TGACAAGATAAATTTATAGCATACACAACGGGTTTGGCGGATTAATTTGA
AGCACCGGCATCTACTGGTGGTACAAGTACGCGTAGTGCGAAGATCGCAT
ACTACAGTCAGTACAATACAGTGGAAGCTATTTTGTACCGTCGCTCTACT
ATTGTATTGTATTTTAGCAGACTGACGGATGGCTGGCTACCCCGCACAGT
ATAATAGGTATAACCACTCGTAAGTCGTAATGCTGAACAGTATTTGTACT
ACAGGTATATGTACTTCGTGTGTACGTGTCGTGTAGACTACAGTCAGCAA
TGTTTTTTCAACACGTTTCTTTCTACATATAGACTACAGTATATTATGTG
TATGATGACACACGTAGGCAAGCGTAAGGATCAAACGGGTAAGGTTGCCA
ATCCTGCTCGTGGTCAGCCGAACAAGGAACTCCCTGTCCCCATTCGCGCC
TGAGAAAGTAATACTGGTCTGACTGGTGCTTGTTGGACAACCCATACCCC
GAAGTGAGTTCAACTCTCTACGATAACCTGCATAGTCTATTGTAGTAGTT
AATCGTTTTTGTCGGTGTTCCGGTACTTGTAGCAGCAGTGCCTGAGCAGA
AGGATACCAGTAGGCAGGTAACAGCGTAAAGCAACGCAGAGGGCTTCTCC
CCCGCCATACAGGCTGGGCTAAGACGCAGCAGAATGCCTGAGTTTTTACG
ATTTTTCACCAGAAATTTTGACACGATTTAGACCAGTAGGTTTTAGTTTT
TTTTCGTAAGTTAGGTAATAGCGGATATAAGTAGATGTGGGAATATTTGT
TTCAAAATTATGGGAAAAATTAAAATAAATAAAAATGTGCGGGGTGGTCC
TCTCCGCAAGAGCGGTCTTGAAAAATCGTCCCCAAATCGCCATAGTTCAT
TGTGTTTTGTATCGGAATCTTTAGAGCCCTTGTAACTACCACCCACGCTC
TTGCGGTGCTCCTGGGCACGTGTACCCAAATTTCAGCTTGATCCGTGACG
CTTTTTTCATACTGATTTTAGTATAGGAAGTATCCTCCACTACGCCGCCA
TTTGGTCATTGTTTACCAAAATCAACTCGGATTCGAAAAATTCCGACGCC
TGCGCTTCCCTTTTTGCCGTATAGGAGCAGCCTCCAAATTTCAAGCTTTA
ACTCGTAGAAACGGCATGAACGAACAGAAGTCAGTTTCCCCCAGCTTGTA
GCATTATTAGAGCCTGCGATTTTACTACATAATGATGACATTCCCCCCCT
TTTTGATGCTCTATTATATTGATTACTTTTGGGTGGATGCTCTATTATAT
TGATTATTTTATCGATTATTATATTGATTATTTAGATGCGTTCAGATTTG
TATTTCATAAGAGAATAACGAAAGTGCCATGTGGTACTGCAGTGTTAAAA
GAAAAATCTGAACCCATCTAAATCTTGCGAGTATCCACCCAATCATCGGC
GAGGGGGGAGGAGTATTACACCCACACGTCTACTACATACCAATAATGGC
TGTGGGGGAAACGAGAGACGCATCAAAACTGGTCCATGATGAAACCTGAA
AAGGTAGCTAGCCTGAGGACTACTGGATGGACCTGCGCCGGCTGACTGTC
GGCAGTTGTAGATTGGAATAACAGGAGGGCCGGATTGCGTGGTTTTTATG
TGCAATTTAATAAATACACACGCAAGGACTTAGAAGAAAAATCTGAACGC
ATCTGAACCTTCTGAGTATCCACCCAATCAGGGGGGGGGGGATTGTCTAG
ATTTTTAGGTGAAAACATAGACTATTAACAGACTGTAAAGACAAAAATTC
TTGATGGTAGTTCCCCGATGGTGTTAATATAATAGTAACATCATCGGGCC
AACAGTATAATGTTGTTTTCCTCCCATTTATTCTGGACGTCAAGTTCGCT
GGATGTATCAGCCGGGGTCACACAGGAGGAAGGTCACACAGGATTTCTCA
TTCACCTTCCTTCTGCGGTGCGTGCCTCAATTTTTCTCGCGATAAGGATA
TAGCCATTCCTTTCTCTCTTCTACGGTGAAGTCGAATTTTGTGTACTAAC
GATTTAATCGTTTTCCACTTGTTGGGCATACATATATATATAACTCTTTA
GCGAGAAAAAAAAACGTTTACCGGGATTCGAACTCACGTCCCAACGTGTC
AAAAGGTTACGAGGTGACTTTTGAGCTATCGGGGCGACCGGCTTGTATTA
TTATGTAGGGGAGAAACCCATTGTTATATTATACACTTACTTAGACACAC
CAAGCAGAGGCAAAAATCTACGTTAAATAAAATTAAAGCCCTAGAGCCTT
TGGTGTTTGTATTGATGAATCGAGGTCGGTTGTAGGATGTACTAAAATAA
ATAAAATAGGGTAGCTAAAATAAATAAAATAGTTTGGTAACTATCGTCAG
CTTAACAAAGGTGTTGGTGCAATGTGTCGTTGATGTTTGGCAACTGGCAT
AATACTACGTATAGTCCTTTTGAAGAGACCAAAATGTCGTAACATTATAT
TTTGATACCCCGAGCTCGATACAGCACTTTCAAAAATAGGGCCAATGACC
CAATATCCTCATACCGCCGGCACTTTCAACAATACCAATAGTGGGTGGGT
GGGAAAGAGAGGCGTATATTAATTGGTCCATGGTGACCTGCCAAGGCGCC
ACTCGTTCGGAACTACCTTGAGGTTTACTGGTCCTGTGCCGGCGGACTCT
CGGCAGTGAACGCCATCGGTACGCAATTGCGCGACCCGATAAACTCGGGA
CTGATTCGATGGCGTATGGCGGTTTCATAAATGGACGCCCCCGCGGAACT
CGGGAGGAATCCCGTAAGTAAGCACCAGATTCAGCCAGAGCATGGAGATG
TAGCAGGCTGACGCGGGACGGGGCGGCTGAACCCGTCTCGCGAGACCAAA
TTCTCAGGAACGTACGAGGACAGTGGAATATTAATTTTCCCTGTTCAGAT
GACCACGAGCAGGATTGGCAACCTTACCCGGTTGATCCATACTCTGCTTA
TATGTGATGGCCATACATACATACATATATACATATGCATACATATGCAT
ACATACATACGTACTGCTGTACACTTGATTTTGATTTGATTTGATTTGAA
TGCTCACATAAGCTGATTTCATAAATCCAGCTTGTGGCCACAAGGTAGAA
AAACACTATTATATCAGGCCCATCGGCTATAAGTGTGATTAAAAAAAAAA
AAAAAAAAAATCATCATCCGGAAGGGGGAAACGTACGACGTACTCTATTC
TCCATACAAGGATAAAACGGTAATAATGGTACAAAAATACCCGGGAAAAA
CGACATGTTTCTCAAAAGAAATATATAAAACGCCACCCAAGTAAATCGAA
CCAGAGGCACCAGTTCACGCTGAACGAAAATACAACTCAGCTGTGTTATA
CTGTACGCTATATTACTGGTGAATCGAAGTCGATTGTAGGATAACAAGTA
TTGATATTATAGTGTCAATACAACAGCAATAATAGAGACAATATAAAATC
GAGGTTGATTGTAGGATGTACTGTTGGTAGGCGCATAGGGTCAACTTTAC
GATATCGAAGAGATAGTGTCAAAACACTACGGCGGGAACATAGTAGGCAA
CGACGAAAGGTCTTCGTGGGATTTGTTTGGGTTCCCCAATGGCATAATAT
CGGGAAGAAATCGAGTGTAAGAGTGCAAAGTAATGTCATAAAAAAGAGCT
TCTCGCCGACATCAATCATACCGTCAACACAAACGCGAATCCCGGCAGAG
AACCCGACCGATGAAATCGTGCGTGGCGTTTTGTGTGCCCCCCCCGGGTT
TTCAACGAATCTGTTGCAAAATATATTATAGTATATGTTGGGCCGGTTTG
GATGTGATGTGGAGGCGTTTCAAAGGGAAAACACACGCTCTGTACATACC
GGTATACGGAGTATATACTCGGTTGTAATTTTGACGATGTTGGTGTTTAT
GGTTGCTGCAAGTGTTGATTCGTACTCCTTCGGCACTTTTCTCTCAACCA
AGTTAAGTGCTAAGACGAAACCTACAGTTGTTAGCCTTCGATGAACCATT
TGACAACTCCGCTTTAGGCCTTCGAGGTGTGTGCTAAGCCCCGCGGAATC
ATACTCGTCATCACCTTCAAACGAACGCATGTTCGCGGGGAGGCATGCTT
CTTGGCGTTCGGAACGTGAAAAAACATATGTACCGGGAGAGATCTTTCAC
CAAAATATTGAACAAAAGTATCAATTGAGACACTGCCAAAAAAACCCTGC
TCCGTCAAGACACTCGGACGCGCCACCATAGATATGATCTCGGACGGGAC
GCCAAAAAGCGAAGCAACGACGCGTTGCGCCGCGACCCTTGCAATCACCT
CTAGAAGATTATTCCACCAGGTGCAATATCCTTCCCCAATTTGACTCCGC
CGTCTCCACAACACCATCTAGACTCTAGACCCCATGTAGAACCCTAACTC
GGATTTACGCCGTTTTTCCCTACCTCCCTCTGCGCGCAATGGCCACGTTT
AAGGGAGGAGCGTGCGCTTACTCTGGCTGCAGGAACGGTCCCTCTTGTCC
TGGAGGCGCCTGCTCGTTCGACAGCTGCGATAACCCATCCTGCCCTGGTC
AGCAGTATTCGCGGTTTGCCCCTCGAACTCCTAACTCGCCTATAGTGATA
TGATTGTGGTACAGTACGGCACTGAAAGTCGCCCTCGCTTATCGTGCGAG
TTTTCCATCGAGTTGCGCAGGGCTTGGGTGTAGTCACGCAAAAGCGTTTT
ACCCCTGTGCTTTCCAAATAATATCTAGTATTAATAGCGAGAAATACCAT
TTAATTTCTCTCACGGGTGGCACGGCTAGCTGTGCAACGCAGTAATGCCC
TTACGGCGTACCACTGCACGCAGGAAGCGGTGTATGTCCACTCGCCCTGC
TGCTGCTTTTTGTACACGTTACTATGGTGCGCATGACCACCAAACGCGGC
GCTTATCGCTGAAGGAGAGTAGGACGGAACATCCAAGCCTCTACAAACGC
GGGCGAACATCCAAGATCTAATCAACAACCAAAGTGTGCTGTACCTCGGT
AAACCCTCTCGTTTTTCCCTGGCTTTCATGCTCTCCTTTGGAACCCGCCA
ATAGTATCTACAAGTCTTAACCTACCTTATACACTCGGACATCAGGTGGA
AACTGCGACTTCCTGTCCTGTCACAACCCGGTCTGTGGCGGCGGAGGCTG
CCGCTTTTTGGATCCAAAGACGACGCTGCGCGACGGCTATTGCGACGGGG
GCGGCTGCGTGGTCAATGGCCGGCCCTTCCCCTCTAGATTCATCGGGAAG
CTCACGGTCTAGGAATTAAAGCGGAGGAAGGCGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1046:199189..204772-

>mRNA_F-serratus_M_contig1046.470.1 ID=mRNA_F-serratus_M_contig1046.470.1|Name=mRNA_F-serratus_M_contig1046.470.1|organism=Fucus serratus male|type=CDS|length=798bp|location=Sequence derived from alignment at F-serratus_M_contig1046:199189..204772- (Fucus serratus male)
ATGAAAACAACTTGGCAGAGACGTCGAACAAGTACCGCGGGAAGACGATC
GGCTGGTATCGTAGTCATCGCAATGATCCTGATCAATACGGCGGTGGCAA
CGGCGCTGCGGCCTGCATCTTGCGATTTTGTATGTCAGATGAAAACAACT
TGGCAGAGACGTCGAACAAGTACCGCGGGAAGACGATCGGCTGGTATCGT
AGTCATCGCAATGATCCTGATCAATACGGCGGTGGCAACGGCGCTGCGGC
CTGCATCTTGCGATTTTGTATGTCAGGGAGGAGCGTGCGCTTACTCTGGC
TGCAGGAACGGTCCCTCTTGTCCTGGAGGCGCCTGCTCGTTCGACAGCTG
CGATAACCCATCCTGCCCTGGGAGGAGCGTGCGCTTACTCTGGCTGCAGG
AACGGTCCCTCTTGTCCTGGAGGCGCCTGCTCGTTCGACAGCTGCGATAA
CCCATCCTGCCCTGGTGGAAACTGCGACTTCCTGTCCTGTCACAACCCGG
TCTGTGGCGGCGGAGGCTGCCGCTTTTTGGATCCAAAGACGACGCTGCGC
GACGGCTATTGCGACGGGGGCGGCTGCGTGGTCAATGGCCGGCCCTTCCC
CTCTAGATTCATCGGGAAGCTCACGGTCTAGGTGGAAACTGCGACTTCCT
GTCCTGTCACAACCCGGTCTGTGGCGGCGGAGGCTGCCGCTTTTTGGATC
CAAAGACGACGCTGCGCGACGGCTATTGCGACGGGGGCGGCTGCGTGGTC
AATGGCCGGCCCTTCCCCTCTAGATTCATCGGGAAGCTCACGGTCTAG
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