mRNA_F-serratus_M_contig1045.465.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1045.465.1
Unique NamemRNA_F-serratus_M_contig1045.465.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1045.465.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1045contigF-serratus_M_contig1045:245155..246593 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Model size305
Cds size174
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1045.465.1prot_F-serratus_M_contig1045.465.1Fucus serratus malepolypeptideF-serratus_M_contig1045 245259..246566 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928859.7619274-UTR-F-serratus_M_contig1045:245154..2452581622928859.7619274-UTR-F-serratus_M_contig1045:245154..245258Fucus serratus maleUTRF-serratus_M_contig1045 245155..245258 -
1690962604.6439013-UTR-F-serratus_M_contig1045:245154..2452581690962604.6439013-UTR-F-serratus_M_contig1045:245154..245258Fucus serratus maleUTRF-serratus_M_contig1045 245155..245258 -
1622928859.828737-UTR-F-serratus_M_contig1045:246566..2465931622928859.828737-UTR-F-serratus_M_contig1045:246566..246593Fucus serratus maleUTRF-serratus_M_contig1045 246567..246593 -
1690962604.691374-UTR-F-serratus_M_contig1045:246566..2465931690962604.691374-UTR-F-serratus_M_contig1045:246566..246593Fucus serratus maleUTRF-serratus_M_contig1045 246567..246593 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928859.778357-CDS-F-serratus_M_contig1045:245258..2452721622928859.778357-CDS-F-serratus_M_contig1045:245258..245272Fucus serratus maleCDSF-serratus_M_contig1045 245259..245272 -
1690962604.6545668-CDS-F-serratus_M_contig1045:245258..2452721690962604.6545668-CDS-F-serratus_M_contig1045:245258..245272Fucus serratus maleCDSF-serratus_M_contig1045 245259..245272 -
1622928859.7934587-CDS-F-serratus_M_contig1045:246100..2462551622928859.7934587-CDS-F-serratus_M_contig1045:246100..246255Fucus serratus maleCDSF-serratus_M_contig1045 246101..246255 -
1690962604.6635768-CDS-F-serratus_M_contig1045:246100..2462551690962604.6635768-CDS-F-serratus_M_contig1045:246100..246255Fucus serratus maleCDSF-serratus_M_contig1045 246101..246255 -
1622928859.8127213-CDS-F-serratus_M_contig1045:246561..2465661622928859.8127213-CDS-F-serratus_M_contig1045:246561..246566Fucus serratus maleCDSF-serratus_M_contig1045 246562..246566 -
1690962604.6797829-CDS-F-serratus_M_contig1045:246561..2465661690962604.6797829-CDS-F-serratus_M_contig1045:246561..246566Fucus serratus maleCDSF-serratus_M_contig1045 246562..246566 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1045.465.1

>prot_F-serratus_M_contig1045.465.1 ID=prot_F-serratus_M_contig1045.465.1|Name=mRNA_F-serratus_M_contig1045.465.1|organism=Fucus serratus male|type=polypeptide|length=58bp
MRLSATITSPSYRPPGVRERRPDETGVQTQPSCPRLPTKRLGRGGSQLVS
PLAGSFK*
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mRNA from alignment at F-serratus_M_contig1045:245155..246593-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1045.465.1 ID=mRNA_F-serratus_M_contig1045.465.1|Name=mRNA_F-serratus_M_contig1045.465.1|organism=Fucus serratus male|type=mRNA|length=1439bp|location=Sequence derived from alignment at F-serratus_M_contig1045:245155..246593- (Fucus serratus male)
CCGAGTTTCATAGTGGTGGAGGCCTTGATGAGGTGTGAATACGGTGCATA
AACCAGCATCCGTTGCCCCAAAGCCTTAAGATTCATTGGAAAGCTCTTCA
GGAATCTTGTATGTTTGCCGTTTTAGGTTGGCTCTCGTAGAAATACGTCT
GGCGGTAGTCACGGATCAGGCGTCTTTCCAAACCTCCCGCTTCTCGCTTT
TGGTTCTTGCGCGTAAGCGTTCATCACACCCTTGGTTTGTCGGCAATTGA
GCTACATTCCATTCTCACCTAAGGTAGTAATTGCTCATCTAATAGTGCGT
GCCGCAACACTTTTGCGCGTTCTGCGGTACCCTATCAGGCTTTCTGCTAC
AATAACATCACCTTCATATCGCCCTCCTGGTGTTCGGGAGAGGCGCCCTG
ACGAAACCGGTGTTCAGACACAACCAAGCTGCCCCCGCTTACCAACCAAA
CGACTGGGCCGGGGGGGCAGTCAGTTGGTGTCACCTCTTGCGGGTAAGTC
CGGTCTTACACCCACCGGATAAACCCTCCCAGACCTATACCCGAAAACCA
GATTTCGAATATAGAGGGTACTTACGAGAAATCCATGTTATTTTATAATG
AACTAGAAGAACAGAAGCAGTATCTGATTCCGACAACTTAGACGCAAGGT
GCTGACAACCGTTTCGTGATTGAGTATGGTAAGATATGTAATACAAAATT
TATTATTATGATATTAGAATCATGGTCCTTTAGTATAATAATGCAAGGGG
AATGCTATGGTTGTCACGTTATGGAAAGATCTCGGGTATATCGGATCTAC
ATAACCAGTAGGAGCAAGGTAGCATATAGAGTAGATGTGTGTTTCTGGTT
ACACTATTTACGTGGTCATAACAAAGAACAAGGGAGCACGACCCCTCAGA
AATCACTCCACTTTCCAACCCAAAAAACATCCGCCCAAGATCTGATGAGG
GGTTCAACGATTGGGGAGGGCGGAAATACGATGATTTCGTCCCCGTGGAG
GTCACTAAAACAGCCCCTTCCGGGGATGAGACTACATGATCCCCTGCAAG
ATCGGCAAGCTTGCTCCAAATTGATAGCATCTGACCAGAGCACTGGTCAA
ATATGTCCCCGGTAGGATCTATTTTCGTGCCGTTCCCTCCCAAAACGGGT
ATAAATGTGTTACATCCCCGCCCCCCCTCAATCGTTGAACTGGTCTGATC
TTCAAAGCATTCTGCCCCACAATCTAGTGTCCTCACTCCTCCCAACAACT
CTACATACCATTAATATCTTCTTCATAAAACAGTGGCTTGACAACCAGTG
TCCCTGCCACTACATCAAAAGGTTCCTTCAAATAGGTTATGGCATCGGTG
ACCAGGGGACATCAAGGTTGAGAACTGCGAGATTCAAGGTGTCCAGTACG
CGAGTTCAGCCCGGACTTAAGTTCAACAGGCCGCAAGGT
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Coding sequence (CDS) from alignment at F-serratus_M_contig1045:245155..246593-

>mRNA_F-serratus_M_contig1045.465.1 ID=mRNA_F-serratus_M_contig1045.465.1|Name=mRNA_F-serratus_M_contig1045.465.1|organism=Fucus serratus male|type=CDS|length=348bp|location=Sequence derived from alignment at F-serratus_M_contig1045:245155..246593- (Fucus serratus male)
ATGAGATGAGGCTTTCTGCTACAATAACATCACCTTCATATCGCCCTCCT
GGTGTTCGGGAGAGGCGCCCTGACGAAACCGGTGTTCAGACACAACCAAG
CTGCCCCCGCTTACCAACCAAACGACTGGGCCGGGGGGGCAGTCAGTTGG
TGTCACCTCTTGCGGGCTTTCTGCTACAATAACATCACCTTCATATCGCC
CTCCTGGTGTTCGGGAGAGGCGCCCTGACGAAACCGGTGTTCAGACACAA
CCAAGCTGCCCCCGCTTACCAACCAAACGACTGGGCCGGGGGGGCAGTCA
GTTGGTGTCACCTCTTGCGGGTTCCTTCAAATAGGTTCCTTCAAATAG
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