mRNA_F-serratus_M_contig1045.461.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1045.461.1
Unique NamemRNA_F-serratus_M_contig1045.461.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1045.461.1 vs. uniprot
Match: A0A6H5KGF5_9PHAE (Fe2OG dioxygenase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KGF5_9PHAE)

HSP 1 Score: 455 bits (1170), Expect = 2.090e-155
Identity = 237/361 (65.65%), Postives = 264/361 (73.13%), Query Frame = 1 
Query:  109 VPFCCAALINRAVANDHDIIMPQPCFLLNMVGFGPPRQARKSTANKTPADARSPVEKTSQQVAPAAVGELPHDAFSQFPPLSPQNQASLQKVD-GDSNKLTTEVLARIREKHGFNFFNENIFPSIRLLHADPVVFEVEDFFTPQECDTYVKMSTESQSGRRKGGFKSMELRSVTTSSQSHFQQQRTSTTWFHHYASAPELLAKASALLGVEDYRLWEEPQTVRYRAGERFNWHLDALPPAETGVSKGGQRTATVLVYLTDMDVNAGGATAFRDLGPLRVRPKKGKCLVFFPSFGGEAGSPFDLRTLHAGEVVGEVAGKGKTSKAKYIAQLWCHKKPYPPSVPVGSSHEAAEECIADYFRRW 1188
            V   C AL      N ++        L    GFG  +Q+R +T  K    A++P     +Q  P   GELP DAFSQFPPL+P+ + +LQK   G +     EV  RIRE+HGF  F+E +FP IRLLHADPVVFEVE FFTPQECD Y+ MST  +SGRRKGG    EL+S TTSSQ   QQ  TSTTWFHHYASAPEL+AKAS LLGV+DY  WEEPQTVRYR GERFNWHLDALPP+E G SKGGQRTATVLVYLT+M  N GGATAFRDLGPLRVRPKKGKCLVFFPSFGGEAGSPFD R LHAGEVVG+    G  +K KYIAQLWCHKKPYPPSVP GSSHEAAE+ I DY RR+
Sbjct:    5 VLLACVALTPGVAFNPNN-----QARLRMQQGFG--KQSRSNTPAKLKTPAKAPYPAVPKQT-PVRAGELPEDAFSQFPPLTPEQKQTLQKAPAGKATAFPVEVADRIRERHGFEHFDEKLFPGIRLLHADPVVFEVEGFFTPQECDAYIAMSTLKKSGRRKGGLAPTELQSATTSSQC--QQXXTSTTWFHHYASAPELVAKASLLLGVDDYSKWEEPQTVRYRPGERFNWHLDALPPSECGASKGGQRTATVLVYLTNMHANGGGATAFRDLGPLRVRPKKGKCLVFFPSFGGEAGSPFDSRVLHAGEVVGQ----GNKAKEKYIAQLWCHKKPYPPSVPEGSSHEAAEKPIVDYARRF 351
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BLAST of mRNA_F-serratus_M_contig1045.461.1 vs. uniprot
Match: D7G1H9_ECTSI (Fe2OG dioxygenase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1H9_ECTSI)

HSP 1 Score: 244 bits (624), Expect = 2.540e-73
Identity = 131/257 (50.97%), Postives = 160/257 (62.26%), Query Frame = 1 
Query:  466 IFPSIRLLHADPVVFEVEDFFTPQECDTYVKMSTESQSGRRKGGFKSMELRSVTTSSQSHFQQ------------QRTSTTWFHHYASAPELLAKASALLGV--EDYRLWEEPQTVRYRAGERFNWHLDALPPAETGVSKGGQRTATVLVYLTDMDVNAGGATAFRDLGPLRVRPKKGKCLVFFPSFGGEAGSPFDLRTLHAGEVVGEVAGKGKTSKAKYIAQLWCHKKPYPPSVPVGSSHEAAEECIADYFRRWIG 1194
            +FP +RLLHA+P V  V DFFT +ECD Y+  S                       S  H Q+            QRTSTTWFH +++ PEL+AKASAL+GV  E+ R WEE QTVRYR GE+F WHLDALPPA    S+GGQR AT+LVYLT+M    GGATAFRDLGPLRVRP+KG  L+FFPS GG    PFD+RTLHAGEVV     +    + K+IAQLW  +  Y P+VP  + HE A   +A++ + W G
Sbjct:  100 LFPGLRLLHAEPPVIGVSDFFTDEECDEYISRSVSPPXXXXXXXXXXXXXXXXXXGSGPHMQRSATLGADVDAVAQRTSTTWFHRFSAVPELMAKASALVGVPFEEGR-WEEAQTVRYRPGEKFTWHLDALPPAPDLASRGGQRIATLLVYLTEMPEGDGGATAFRDLGPLRVRPRKGSALLFFPSLGGAPDCPFDIRTLHAGEVV-----RPGAEQDKWIAQLWLRESRYTPTVPKQNRHEHAAAVVAEFDKIWQG 350
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BLAST of mRNA_F-serratus_M_contig1045.461.1 vs. uniprot
Match: A0A7S2KCF3_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KCF3_9STRA)

HSP 1 Score: 243 bits (619), Expect = 1.710e-71
Identity = 124/241 (51.45%), Postives = 161/241 (66.80%), Query Frame = 1 
Query:  469 FPSIRLLHADPVVFEVEDFFTPQECDTYVKMSTESQSGRRKGGFKSMELRSVTTSSQSHFQQQRTSTTWFHHYASAPELLAKASALLGVEDYRLWEEPQTVRYRAGERFNWHLDALPPAETGVSKGGQRTATVLVYLTDMDVNAGGATAFRDLGP-----LRVRPKKGKCLVFFPSFGGEAGSPFDLRTLHAGEVVGEVAGKGKTSKAKYIAQLWCHKKPYPPSVPVGSSHEAAEECIADY 1176
            F   R+LH DP+V  V+DFFT +ECD Y+ MS +  +G + G   ++  RS+T    +  + QRTSTTWFHHY + PEL+AK+S L G++D  ++EEPQTVRY+  ++F WHLDAL P    +SKGGQRTAT+LVYLTD+    GGAT FRDLGP     L+V+PKKG  L+FFP+ GG   +PFD+RTLHAGEVV            K+IAQLW  +  Y P+VP  + H AA E I+ Y
Sbjct:  202 FDKFRVLHIDPLVIAVDDFFTHEECDKYIAMS-DPTAGNKDGD--AVMTRSMTVGKDAAAKSQRTSTTWFHHYKNVPELMAKSSRLFGLDDIGVFEEPQTVRYQPDQKFTWHLDALAPGSENISKGGQRTATLLVYLTDLGPEDGGATTFRDLGPAEGEPLKVQPKKGSALLFFPAAGGIPNTPFDIRTLHAGEVV-----SADCKSDKWIAQLWLREDSYEPTVPPENVHAAATEPISQY 434
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BLAST of mRNA_F-serratus_M_contig1045.461.1 vs. uniprot
Match: A0A6H5L0Y5_9PHAE (Fe2OG dioxygenase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Y5_9PHAE)

HSP 1 Score: 244 bits (623), Expect = 1.350e-70
Identity = 132/261 (50.57%), Postives = 161/261 (61.69%), Query Frame = 1 
Query:  466 IFPSIRLLHADPVVFEVEDFFTPQECDTYVKMSTESQSGRRKGGFKSMEL----------------RSVTTSSQSHFQQQRTSTTWFHHYASAPELLAKASALLGV--EDYRLWEEPQTVRYRAGERFNWHLDALPPAETGVSKGGQRTATVLVYLTDMDVNAGGATAFRDLGPLRVRPKKGKCLVFFPSFGGEAGSPFDLRTLHAGEVVGEVAGKGKTSKAKYIAQLWCHKKPYPPSVPVGSSHEAAEECIADYFRRWIG 1194
            +FP +RLLHA+P V  V DFFT +ECD Y+  S                                 RS T  +      QRTSTTWFH +++ PEL+AKASAL+GV  E+ R WEE QTVRYR GE+F WHLDALPPA    SKGGQR AT+LVYLT+M    GGATAFRDLGPLRVRP+KG  L+FFPS GG    PFD+RTLHAGEVV     +    + K+IAQLW  ++ Y P+VP  + HE A   +A++ + W G
Sbjct:  322 LFPGLRLLHAEPPVIGVSDFFTDEECDEYISRSVSPPXXXXXXXXXXXXXXXXXXXXXXXXGPHMQRSATLGADVDAVAQRTSTTWFHRFSAVPELMAKASALVGVPFEEGR-WEEAQTVRYRPGEKFTWHLDALPPAPDLASKGGQRIATLLVYLTEMPEGDGGATAFRDLGPLRVRPRKGSALLFFPSLGGAPDCPFDIRTLHAGEVV-----RPGAEQDKWIAQLWLRERRYTPTVPKQNRHEHAASAVAEFDKIWQG 576
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BLAST of mRNA_F-serratus_M_contig1045.461.1 vs. uniprot
Match: A0A7S2N1B0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2N1B0_9STRA)

HSP 1 Score: 234 bits (598), Expect = 3.110e-70
Identity = 122/265 (46.04%), Postives = 164/265 (61.89%), Query Frame = 1 
Query:  397 NKLTTEVLARIREKHGFNFFNENIFPSIRLLHADPVVFEVEDFFTPQECDTYVKMSTESQSGRRKGGFKSMEL-RSVTTSSQSHFQQQRTSTTWFHHYASAPELLAKASALLGVEDYRLWEEPQTVRYRAGERFNWHLDALPPAETGVSKGGQRTATVLVYLTDMDVNAGGATAFRDLG-----PLRVRPKKGKCLVFFPSFGGEAGSPFDLRTLHAGEVVGEVAGKGKTSKAKYIAQLWCHKKPYPPSVPVGSSHEAAEECIAD 1173
            +K TT +L ++     F  F        R+LH DP++  ++DF TP ECDTY+ +++  +  +       ME+ +S T     + + QRTSTTWFHHY     L+AKAS LLG++    WEEPQTVRYR  E+F WHLDAL P+E     GGQR AT+LVYL D+    GG+T FRDLG     PL+V+PKKG  L+FFP+ GG    PFD+RTLHAGE V +     ++   K+IAQLW  +  Y P+ P G+SHEAA E +++
Sbjct:   41 SKTTTNLLPQLSSLPPFTKF--------RILHTDPMLLSIDDFLTPTECDTYISLTSNPKYDKN-ANTAPMEIGQSKTVGKDMYSKSQRTSTTWFHHYRGMAGLMAKASRLLGLKGIERWEEPQTVRYRRSEKFTWHLDALAPSEELTKAGGQRVATLLVYLADLPDGCGGSTMFRDLGGESGEPLKVQPKKGSALLFFPAAGGIPNVPFDIRTLHAGEAVSD-----ESDDDKWIAQLWLREHVYTPTAPPGNSHEAAVEAVSE 291
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BLAST of mRNA_F-serratus_M_contig1045.461.1 vs. uniprot
Match: K0SVE6_THAOC (Fe2OG dioxygenase domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SVE6_THAOC)

HSP 1 Score: 237 bits (605), Expect = 4.970e-69
Identity = 125/245 (51.02%), Postives = 158/245 (64.49%), Query Frame = 1 
Query:  469 FPSIRLLHADPVVFEVEDFFTPQECDTYVKMSTESQSGRRK--GGFKSMEL-RSVTTSSQSHFQQQRTSTTWFHHYASAPELLAKASALLGVEDYRLWEEPQTVRYRAGERFNWHLDALPP-AETGVSKGGQRTATVLVYLTDMDVNAGGATAFRDLG---PLRVRPKKGKCLVFFPSFGGEAGSPFDLRTLHAGEVVGEVAGKGKTSKAKYIAQLWCHKKPYPPSVPVGSSHEAAEECIADYFR 1182
            F   R+LH DP+V  V+DFFT +ECD YV+MS ++++ + +  G  + + L +S T    S  + QRTSTTWFHHYA  PEL+A+A+ LLG+     +EEPQTVRYR  E+F WHLDAL P      S  GQR +T+LVYLTD+    GGAT FRDLG   PL+VRPKKG  L+FFPS GG    PFD+RTLH GE VGE A        K+IAQLW  ++ Y P+ P GS H  A   I +Y +
Sbjct:  229 FEQFRVLHVDPMVIAVDDFFTSEECDKYVQMSIDAENNQDQEAGALQPLLLGQSQTVGKDSRSKAQRTSTTWFHHYAGVPELMARAARLLGLPGISRFEEPQTVRYRRSEKFTWHLDALSPDVANDSSSAGQRVSTLLVYLTDLKSEEGGATMFRDLGGDGPLKVRPKKGSALLFFPSAGGIPDCPFDIRTLHCGEAVGEDA-----PNEKWIAQLWLRQRDYTPTAPAGSEHRKATVAIQEYCK 468
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BLAST of mRNA_F-serratus_M_contig1045.461.1 vs. uniprot
Match: A0A7S2UAB3_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UAB3_9STRA)

HSP 1 Score: 237 bits (605), Expect = 5.790e-69
Identity = 126/247 (51.01%), Postives = 152/247 (61.54%), Query Frame = 1 
Query:  469 FPSIRLLHADPVVFEVEDFFTPQECDTYVKMSTES---QSGRRKGGFKSMELR---SVTTSSQSHFQQQRTSTTWFHHYASAPELLAKASALLGVEDYRLWEEPQTVRYRAGERFNWHLDALPPAETGVSKGGQRTATVLVYLTDMDVNAGGATAFRDLG-----PLRVRPKKGKCLVFFPSFGGEAGSPFDLRTLHAGEVVGEVAGKGKTSKAKYIAQLWCHKKPYPPSVPVGSSHEAAEECIADY 1176
            F   R+LH DP+V  V+DFFTP+ECD  +  ST +        K G   + ++   S T    S  + QRTSTTWFHHYA  PEL+AKA  L+G+ D   +EEPQTVRYR  E F WHLDAL P      KGGQR AT+LVYLTD+    GGAT FRDLG     PL+VRPKKG  L+FFP+ GG    P DLRTLH GE V   A      + K+IAQLW  + PY P+ P G+SH +A   I+DY
Sbjct:  235 FSKFRVLHVDPMVLCVDDFFTPEECDALIARSTTTVITADNNEKEGTTLLPMKIGQSKTVGKDSRARAQRTSTTWFHHYAGVPELMAKACRLMGINDISAFEEPQTVRYRRTEHFTWHLDALAPTPELADKGGQRCATLLVYLTDLSEKDGGATMFRDLGGSDGEPLKVRPKKGSALLFFPAAGGIPSVPLDLRTLHCGEAVASDA-----EQDKWIAQLWLRETPYTPTAPPGNSHASASSPISDY 476
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BLAST of mRNA_F-serratus_M_contig1045.461.1 vs. uniprot
Match: A0A7S1ZRX7_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZRX7_9STRA)

HSP 1 Score: 229 bits (584), Expect = 1.620e-68
Identity = 117/242 (48.35%), Postives = 155/242 (64.05%), Query Frame = 1 
Query:  469 FPSIRLLHADPVVFEVEDFFTPQECDTYVKMSTESQSGRRKGGFKSMEL-RSVTTSSQSHFQQQRTSTTWFHHYASAPELLAKASALLGVEDYRLWEEPQTVRYRAGERFNWHLDALPPAETGVSKGGQRTATVLVYLTDMDVNAGGATAFRDLG-----PLRVRPKKGKCLVFFPSFGGEAGSPFDLRTLHAGEVVGEVAGKGKTSKAKYIAQLWCHKKPYPPSVPVGSSHEAAEECIADY 1176
            F   R+LH DP+V  V+DF T  ECDT V + T++    +      M++ +S T     + + QRTSTTWFHHY   P+L+AKAS LLG+++   WEEPQTVRYR  E+F WHLDAL P++     GGQR AT++VYL D+   +GG+T FRDLG     PL+V PKKG  LVFFP+ GG    PFD+RTLHAGE V +     ++   K+IAQLW  +  Y P+ P G++H AA + I+ Y
Sbjct:   26 FEKFRVLHVDPMVLCVDDFLTSDECDTLVAL-TDNPKYDKNANTAPMKIGQSKTVGKDMYSKSQRTSTTWFHHYRGLPQLMAKASRLLGLDNIDRWEEPQTVRYRRSEKFTWHLDALGPSDELAKSGGQRVATLIVYLADLPEGSGGSTMFRDLGGESGEPLKVHPKKGSALVFFPAAGGIPNVPFDIRTLHAGEAVSD-----ESEDDKWIAQLWLRETKYTPTAPPGNTHAAATDAISKY 261
[Close]
BLAST of mRNA_F-serratus_M_contig1045.461.1 vs. uniprot
Match: A0A448ZM68_9STRA (Fe2OG dioxygenase domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZM68_9STRA)

HSP 1 Score: 234 bits (596), Expect = 8.340e-68
Identity = 129/287 (44.95%), Postives = 173/287 (60.28%), Query Frame = 1 
Query:  364 QASLQKVDGDSNKLTTEVLARIREKHGFNFFNENIFPSIRLLHADPVVFEVEDFFTPQECDTYVKMS----TESQSGRRKGGFKSMELRSVTTSSQSHFQQQRTSTTWFHHYASAPELLAKASALLGVEDYRLWEEPQTVRYRAGERFNWHLDALPPAETGVSKGGQRTATVLVYLTDMDVNAGGATAFRDLGP------------LRVRPKKGKCLVFFPSFGGEAGSPFDLRTLHAGEVVGEVAGKGKTSKAKYIAQLWCHKKPYPPSVPVGSSHEAAEECIADY 1176
            +AS   +D D +  TT   A    K+  +      F  I +LH DP+V  ++DFFT +ECD YV+MS    T+  S +    FK+   RS T     + + QRTSTTWFHHY + PEL++KAS L+G++    WEEPQTVRY+  E+F WHLDAL P ++   KGGQR AT+LVYL D++  +GGAT FRDL P            L+V+PKKG  L+FFP+ GG  G+PFD+RTLH GEVV      G +   K+I+QLW     Y P+ P G+ HE A + + +Y
Sbjct:  189 EASASXMDNDVDSETTAANAE-EMKNAISSLPP--FEKINVLHLDPLVLSIDDFFTEEECDRYVEMSLAPVTDEGSQKTMDSFKT---RSKTVGKDKNAKSQRTSTTWFHHYKNVPELMSKASRLVGLDTIDRWEEPQTVRYKRNEKFTWHLDALAPDQSTAEKGGQRLATLLVYLKDLE--SGGATIFRDLTPATGETDDNASGFLKVQPKKGSALMFFPAAGGIPGAPFDIRTLHCGEVV-----PGASETDKWISQLWLRATXYTPTAPPGNLHEEALDRVKEY 462
[Close]
BLAST of mRNA_F-serratus_M_contig1045.461.1 vs. uniprot
Match: A0A7S2KB24_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KB24_9STRA)

HSP 1 Score: 233 bits (593), Expect = 2.190e-67
Identity = 126/259 (48.65%), Postives = 157/259 (60.62%), Query Frame = 1 
Query:  469 FPSIRLLHADPVVFEVEDFFTPQECDTYVKMSTESQSGRRKGGFKSMEL-------------RSVTTSSQSHFQQQRTSTTWFHHYASAPELLAKASALLGVEDYRLWEEPQTVRYRAGERFNWHLDALPPAETGVSKG-GQRTATVLVYLTDMDVNAGGATAFRDLG---------PLRVRPKKGKCLVFFPSFGGEAGSPFDLRTLHAGEVVGEVAGKGKTSKAKYIAQLWCHKKPYPPSVPVGSSHEAAEECIADY 1176
            F   R+LH DP+V  ++DFFT +ECD YV++S +++  +        E              +S T    S  + QRTSTTWFH+Y   PEL+AKAS LLG+E    +EEPQTVRYR  E+F WHLDAL P E     G GQR AT+LVYLTD+   +GGAT FRDLG         PL+VRPKKG  L+FFPS GG  G+PFD+RTLH GE V E A        K+IAQLW  ++ Y P+ PVG+SH  A + I  Y
Sbjct:  204 FEKFRVLHTDPMVLAIDDFFTNEECDKYVQISIDAEKQQTNSAAAGDETTQEETALQPMLLGQSQTVGKDSRSKAQRTSTTWFHYYKGVPELMAKASRLLGLEGIDRFEEPQTVRYRRNEKFTWHLDALSPEEANNPSGSGQRIATLLVYLTDVPAGSGGATMFRDLGGNNGAEDSQPLKVRPKKGSALLFFPSAGGIPGAPFDIRTLHCGEAVAEDA-----ENEKWIAQLWLRQRGYEPTAPVGNSHGDASDEIGRY 457
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1045.461.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KGF5_9PHAE2.090e-15565.65Fe2OG dioxygenase domain-containing protein n=2 Ta... [more]
D7G1H9_ECTSI2.540e-7350.97Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A7S2KCF3_9STRA1.710e-7151.45Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A6H5L0Y5_9PHAE1.350e-7050.57Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A7S2N1B0_9STRA3.110e-7046.04Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
K0SVE6_THAOC4.970e-6951.02Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A7S2UAB3_9STRA5.790e-6951.01Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S1ZRX7_9STRA1.620e-6848.35Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A448ZM68_9STRA8.340e-6844.95Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A7S2KB24_9STRA2.190e-6748.65Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1045contigF-serratus_M_contig1045:141680..147338 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score439.5
Seed ortholog evalue1.6e-120
Seed eggNOG ortholog2880.D8LRR7
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.procollagen-proline 4-dioxygenase activity
EggNOG OGsKOG1591@1,KOG1591@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size1476
Cds size1128
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1045.461.1prot_F-serratus_M_contig1045.461.1Fucus serratus malepolypeptideF-serratus_M_contig1045 141779..147089 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928861.3050497-UTR-F-serratus_M_contig1045:141679..1417781622928861.3050497-UTR-F-serratus_M_contig1045:141679..141778Fucus serratus maleUTRF-serratus_M_contig1045 141680..141778 +
1690962605.459116-UTR-F-serratus_M_contig1045:141679..1417781690962605.459116-UTR-F-serratus_M_contig1045:141679..141778Fucus serratus maleUTRF-serratus_M_contig1045 141680..141778 +
1622928861.3648958-UTR-F-serratus_M_contig1045:147089..1473381622928861.3648958-UTR-F-serratus_M_contig1045:147089..147338Fucus serratus maleUTRF-serratus_M_contig1045 147090..147338 +
1690962605.4984586-UTR-F-serratus_M_contig1045:147089..1473381690962605.4984586-UTR-F-serratus_M_contig1045:147089..147338Fucus serratus maleUTRF-serratus_M_contig1045 147090..147338 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928861.321107-CDS-F-serratus_M_contig1045:141778..1420931622928861.321107-CDS-F-serratus_M_contig1045:141778..142093Fucus serratus maleCDSF-serratus_M_contig1045 141779..142093 +
1690962605.4699774-CDS-F-serratus_M_contig1045:141778..1420931690962605.4699774-CDS-F-serratus_M_contig1045:141778..142093Fucus serratus maleCDSF-serratus_M_contig1045 141779..142093 +
1622928861.3342116-CDS-F-serratus_M_contig1045:146098..1465541622928861.3342116-CDS-F-serratus_M_contig1045:146098..146554Fucus serratus maleCDSF-serratus_M_contig1045 146099..146554 +
1690962605.4791195-CDS-F-serratus_M_contig1045:146098..1465541690962605.4791195-CDS-F-serratus_M_contig1045:146098..146554Fucus serratus maleCDSF-serratus_M_contig1045 146099..146554 +
1622928861.349914-CDS-F-serratus_M_contig1045:146732..1470891622928861.349914-CDS-F-serratus_M_contig1045:146732..147089Fucus serratus maleCDSF-serratus_M_contig1045 146733..147089 +
1690962605.4897861-CDS-F-serratus_M_contig1045:146732..1470891690962605.4897861-CDS-F-serratus_M_contig1045:146732..147089Fucus serratus maleCDSF-serratus_M_contig1045 146733..147089 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1045.461.1

>prot_F-serratus_M_contig1045.461.1 ID=prot_F-serratus_M_contig1045.461.1|Name=mRNA_F-serratus_M_contig1045.461.1|organism=Fucus serratus male|type=polypeptide|length=376bp
MRLVPFCCAALINRAVANDHDIIMPQPCFLLNMVGFGPPRQARKSTANKT
PADARSPVEKTSQQVAPAAVGELPHDAFSQFPPLSPQNQASLQKVDGDSN
KLTTEVLARIREKHGFNFFNENIFPSIRLLHADPVVFEVEDFFTPQECDT
YVKMSTESQSGRRKGGFKSMELRSVTTSSQSHFQQQRTSTTWFHHYASAP
ELLAKASALLGVEDYRLWEEPQTVRYRAGERFNWHLDALPPAETGVSKGG
QRTATVLVYLTDMDVNAGGATAFRDLGPLRVRPKKGKCLVFFPSFGGEAG
SPFDLRTLHAGEVVGEVAGKGKTSKAKYIAQLWCHKKPYPPSVPVGSSHE
AAEECIADYFRRWIGKEMTHDTAVY*
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mRNA from alignment at F-serratus_M_contig1045:141680..147338+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1045.461.1 ID=mRNA_F-serratus_M_contig1045.461.1|Name=mRNA_F-serratus_M_contig1045.461.1|organism=Fucus serratus male|type=mRNA|length=5659bp|location=Sequence derived from alignment at F-serratus_M_contig1045:141680..147338+ (Fucus serratus male)
CGCCCTTCCCCGATCAGACTGTCAGCTCAAGAGGTACTAGGTGCTGGGAG
GGAATCCTAGAGCACGTACATCCAGTTTTAATATATCTGGGTCCAAGTAA
TGCGACTCGTCCCCTTCTGCTGTGCTGCGCTGATAAATAGGGCGGTGGCG
AACGATCATGATATCATAATGCCTCAACCTTGTTTCTTGTTGAACATGGT
CGGCTTCGGACCGCCGCGACAAGCTAGGAAAAGTACAGCAAACAAGACGC
CCGCCGATGCAAGATCTCCAGTGGAGAAGACGTCCCAACAAGTGGCCCCG
GCAGCGGTAGGGGAATTGCCACATGATGCATTCTCCCAGTTTCCACCTCT
TTCGCCCCAGAACCAAGCGTCGCTGCAGAAGGTCGACGGGGATAGCAATA
AACTGACTACAGAGGCAAGTGGTGGGTGTTCATAACATGATACACATATG
CACCGTATTATACAACATGTATTTCTCTCGTTTTTAGATCCACTTCGCAG
CATGTATGGTCAGCACTACTCGCACGTATTGCCATAACTAGAAAAACGTC
TTGACCGAAGCAATGATGTGCCTCGCGGAGAGCTGGTAGCCCTCAGGGTT
AAAGCAAAGGAATCTCTCAGGGGGATATTCAGGAACTCCTTTACCCTGCG
ATTTAATGTATACGGAGTATTTGTGATATCATTGTTCTAAATGTTAGAAT
AGTGATACGTTACTACGCTACAGTACACTCCCGTGTTGCAGCTACTCGTG
TGGATCGAAATTTATCTCACTCTCTTCCTATATGTACGTGTGTACGGTTA
TCACATACTGGTATAGCAAGTAAGGATCAACCGGGTAAGGTTGCCAATCC
TGCTCGTGGTCAGCTGAACAGGGAAAATGAAAAGTTTCCTGCCCCCGTTC
GCTCTTGAGAATTTGGTCCCGCGAGACGGGTTCGGCCGTCCCGCCCCGCG
TCAGCCTGCTCATTCTCCATACTTTCCGCAGCGGTGTCCATCCATACGCC
ATCGGGTCAGTGCCGAGTTTATCGGATCACTAAATTGCGCACCAATGGCG
TTCACTACCGAGAGTCCGCCGGCACAGGGTCAGTAGCCCTCAGGGTAGTT
CCAGTAACGGGTGTTGCCTTTGCCTCTATTTTCCCACACCCACTATTAGT
ATGAAGTGGACATGTTGTAAGTATCGGAGGCGTATGGGGCCAATCAAGGT
TACCAATTTTCACCTATTGCAACGTCGCCCATCCCGCTTGTAATGTCCGA
CGGATCACCCAATCCACGCCGCCCCGGTTTACGCCAACACCTTTCACGAT
GATGATGACAATTTTTAATCGCGACGCAAGTTCAGAACTCATACATACAC
CTGCCTCATGAATCAAAACCAATGGCAATACCTTCTTACCCTTTCCGCTA
CAGAATCCTGAAAAAAAATGTGTCTTAAACTCATACCAGTAAATTCCGCA
TAAGGCTACGAGTACAAAAATATGGTAACATTTTTATAGCATAGGACGAG
AGGACGAGTTGTGGTTAGGACCAGTCGGGTGGACCAGTCGGGTGGTAACA
TGCTGTCCCTGTTCATGCCCTGATCGAGCGTAGCCGCACGACTTTCCATA
TGGTCCTATCAATAGTACCGTGTAAGAAAGACAGTTCTATTAATAATACT
CTACTGCACACCCTTAGACTATTATTTAATAGTCTAATATTGCGGCAAAG
AAAAGAAGGCATGATCGAATATAGTGATGGTATGGTGAAGAACCGCGCAA
GGTTTCCTCCCAAGGGAGATTGTTGGTCCTCTGTTTTTTCTCACTGCAGA
CACCCGTGTAAGTTAGTGCGCTGAACCGTGACTGAGTAGTCTAGTGGTTC
AGCGCACTAACTTACAAAATATATGTCTTGGGCTCTCTGGCCTCTTAACT
ACTCAGTCACGTGACTGAGTAGTCTAGTGGTTCAGCGCACTAACTGACAA
CCCGAAACCTTCGAACACCCATACTTTCCTTTCACCGGTACGCTGAAAAT
TCGAGAGAGTTTCCGTCGTCAGGTTGGGCGTGCATGGTTGATGTTGAAAG
GAAAACACTGATTTCGGTTTGCATGTTGGATTTCCCAGTGATCGTCGCTT
TGGATCAACTATTAAATACAGTACTGCACAGTGTCGGGGAGAAGACCGCT
ATGCTTTACATCTACAGTTTTTGCCATAGCCTCCGATGCAGTCTGTCTCT
ATAGCATATTATGCTCGCTGTATGTACGATTAGGCTCTAGGGGGTGGGGG
AAAAGAAATTCGCCAAAAAAATGTTACATAATGTTTCCTGAATACATACT
CGTTACTCGAGCTATCTTGAGGACTGCTGGCCTTGTGCCGACGGACTCTC
GGCGGTAAACGCAGTCGGTTTGCAATTGCATGACCCGATAAACTCGGGAA
TGGCCCGATGGCGTTTGCCGGTATTGATGGACGCCATCGCGGAAAGCGGG
AGGGAGGGGACGAGCCCGGGAGTAGCTCCAAATTCAGTCGATCAGTCGAT
CAGTGGGTGTGGGGAGTGAGCGGGCTGACGCGACGGGACGGCCGAAGGTT
TCTCGCCAGACTTTTCTGGCTCGAACAGGGACAGGGAAAATTCATTTTCT
CTGTTGAGCTGACCACAAGCAGGATTGGTAACCATAGCGGTTGATGTTGA
TGTTTGACGCCCAGTCTTTTGAAAGTGATGATGAGTCATATCTCTAGTTC
TAGTTCTCTAGTACAAACATAGCAAGACTGTTTTTCTATATCATCAGGTT
TCCAAGAGGTAGGATTAAATATGGGATACACTGGCGTTGAACAGTCACTA
ACTTTAAATACGAAATATTGGTTACGTAATGTACCTCGAACTACTTATTT
TAACGGGGGTTTCTACCAAACGGACATTTGGTAGTACTTATGACTGTGGG
GGACAGAGCCTGTTTTGCCACGGGAACAGTCATTATCTAGGAGTTTGGGA
TGTTGAATTATTGATTCAAGATGGTAACATGATCGACATGATAGAAGGAG
GAAGGCCCCCGTTTGTACAAAATCACAACTAGAGTGATCCTGAGGTATTA
ATCGCTGCTCTACGAATGCGCGACCAAGTCGATTTGCAAAGAGCACTATC
AATACAAGTTCCGTCCGTTCCATCACCAACTTTTCTGCTGAGTGGCTCGC
TAGCGTTGGGGAGGGGGAAAATGTGTTACCTGTAGTAATATTGATAGTTA
TTAAAGTTACTGAGCAATGGAGCAGAGAAGTCCGATCCACCAAAAGACAC
CTTCGCGCAGAGTAACACGAGGACACACGACCATGCTGGTACCAGCAGCC
AGGGCAAGAAACTGACTATTAAAAGTCTACAGGTACAATTAATAATAATA
CTAATACTTGAGGGCGGCCTTTATTGCTTGGTACTCTCCAAAAAGCTATT
ATTAATAGTATTAAAAGTTCGTGGCGCAGGAGGAATGCCCGTAGTTTATT
GGCTCATTTTTGTTGAGTCCATCGAGCGTGTCCAACTATAATAGCTCTAA
TAACGGAGGAGGCCTGTATCAATAGTAAGATGGATGGATTCATTTCTTGT
GAACTCAGTCCCTTTGTATCATTTGGACCCTGTGATCTCGCTGTTTATGT
AAATTACAGGTCATGGCCATTTCGACGCGTGTTATTTCCGTCTATGAAGT
AGTTGACATTATATCATGTACAGTACATTTCCTTTACTTCTCTATCTTCG
CTCCTCTGCTGACGTCAACAATTATAAATAATTATCAATGCCAGATGATA
GCGGGACTTGGCCAGAACCGACACTAAAAGCGCGATTTGACTTAAAAAAA
CAATCAGCTTTTGACGATCCTGCTACTGAAGTATGGAGCTCTCGCTCTAC
TGTAAAGCCTGTGTATGTTCAAATTAGCGCCACGGTAAAAGTACTGAATT
CCCTTTTTCTTGCCTCAGCTACTATTACTATATTAATACGGCTATCACTA
TTACTATTAATGGCGCCGTCCTACACGTGGTATTCTATCCAAAACTCTCG
TCGAAATCTTTACAGTCTCTGTGCGGGAAATGATTACGAGAAGCCAGGAG
AGGTGGATCGTCGGGTTAGAGGAGAACATGGACTCTCATATTCTCATCTA
CCGTAGTTGGGCCGGTGTCTAATGGTCGCTTCTCTTAATGCCATCAGGAG
GTTTCATTTATTGGTAGTAGCCAAGATGAAAAGGGGGCATCCAAGACCTC
AGTGGCCTGAAATTTATTTCAGTAAATTATACTCGAGTCGTGTCACTTTA
TATCATCTCTCGTCATAGATGTCATCGTCAGGTGACACCTTGCTTAAGTG
ATTCGCCGTGACGGGGGTAACTGGAACGCGGTGATCATGCAAATTAAGAT
TAAGCCTGATCTCCCCTGCTGTTGTTGATGCTTTAATGTAATGTCAATGC
CAACGTTGATGCTCACCAGGTCCTGGCTCGGATACGGGAAAAACATGGCT
TTAACTTTTTCAACGAAAATATTTTCCCTTCCATCCGTCTCCTACACGCT
GACCCTGTGGTTTTCGAAGTAGAGGATTTTTTCACCCCTCAAGAGTGCGA
CACTTACGTGAAAATGTCCACGGAGTCTCAGTCAGGGCGAAGGAAGGGTG
GCTTCAAGTCAATGGAGCTCAGAAGCGTAACAACAAGCTCCCAGTCTCAC
TTCCAGCAACAGCGGACGTCAACTACCTGGTTCCATCATTATGCATCGGC
ACCAGAATTGCTGGCCAAGGCGTCGGCGCTCTTGGGGGTGGAAGATTACC
GCCTGTGGGAAGAGCCGCAGACAGTGCGATACCGGGCTGGCGAGAGATTC
AACTGGCACTTGGACGCTTTACCACCCGCCGAGACTGGGGTATCGAAAGG
CGGACAGCGCACGGCTACCGTCCTGGTGAGTCTGACTTTAAGACACGTGG
TGTCGAGGCGCGAGTTTATGCTTGTCGAAAGCCACAACAACCCTTTACAC
GCGAGCTTCGGCTGTAATGATATTCAATAGTATCACCTCATAGACCTCAT
ACGATACAGTTGTAAGAGTCCGATCCCTTGTCGGGCAACTGCACGCATTT
CAGGTTTACCTAACGGACATGGACGTAAACGCTGGTGGCGCAACCGCTTT
TCGAGACCTTGGCCCACTGCGTGTTCGCCCCAAGAAGGGAAAGTGCTTGG
TGTTTTTTCCATCATTCGGGGGTGAGGCAGGGTCCCCGTTCGACCTCCGA
ACTCTACATGCGGGAGAAGTTGTGGGAGAGGTGGCAGGCAAGGGGAAGAC
TTCAAAGGCCAAGTATATTGCGCAACTTTGGTGCCACAAGAAGCCTTATC
CACCTTCCGTTCCAGTTGGGTCTTCACACGAGGCAGCTGAGGAGTGCATC
GCTGATTATTTTAGGCGGTGGATAGGCAAAGAGATGACTCATGATACTGC
TGTGTATTAATGATCCGTGAGGTTACCTATTCGTGAGCCTTTAACGCAGA
GCTAACTAGCTCCTCTTTATCCCACCCTTGGAACAGGCCTTACGTGAGTC
GAATTGGGCGCGATGAAACCAGCGATATAACCTGCATCTTGCATCCCCAA
GTCTCGACACAAGCATTGAGATCGATGGCGCACGCACATTAGCCTCTGCA
CGTTGCCGATCACGTGCTCGGACAAAGTAATTTTATCGGTCCGTGAGTAG
CGATTTATC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1045:141680..147338+

>mRNA_F-serratus_M_contig1045.461.1 ID=mRNA_F-serratus_M_contig1045.461.1|Name=mRNA_F-serratus_M_contig1045.461.1|organism=Fucus serratus male|type=CDS|length=2256bp|location=Sequence derived from alignment at F-serratus_M_contig1045:141680..147338+ (Fucus serratus male)
ATGCGACTCGTCCCCTTCTGCTGTGCTGCGCTGATAAATAGGGCGGTGGC
GAACGATCATGATATCATAATGCCTCAACCTTGTTTCTTGTTGAACATGG
TCGGCTTCGGACCGCCGCGACAAGCTAGGAAAAGTACAGCAAACAAGACG
CCCGCCGATGCAAGATCTCCAGTGGAGAAGACGTCCCAACAAGTGGCCCC
GGCAGCGGTAGGGGAATTGCCACATGATGCATTCTCCCAGTTTCCACCTC
TTTCGCCCCAGAACCAAGCGTCGCTGCAGAAGGTCGACGGGGATAGCAAT
AAACTGACTACAGAGATGCGACTCGTCCCCTTCTGCTGTGCTGCGCTGAT
AAATAGGGCGGTGGCGAACGATCATGATATCATAATGCCTCAACCTTGTT
TCTTGTTGAACATGGTCGGCTTCGGACCGCCGCGACAAGCTAGGAAAAGT
ACAGCAAACAAGACGCCCGCCGATGCAAGATCTCCAGTGGAGAAGACGTC
CCAACAAGTGGCCCCGGCAGCGGTAGGGGAATTGCCACATGATGCATTCT
CCCAGTTTCCACCTCTTTCGCCCCAGAACCAAGCGTCGCTGCAGAAGGTC
GACGGGGATAGCAATAAACTGACTACAGAGGTCCTGGCTCGGATACGGGA
AAAACATGGCTTTAACTTTTTCAACGAAAATATTTTCCCTTCCATCCGTC
TCCTACACGCTGACCCTGTGGTTTTCGAAGTAGAGGATTTTTTCACCCCT
CAAGAGTGCGACACTTACGTGAAAATGTCCACGGAGTCTCAGTCAGGGCG
AAGGAAGGGTGGCTTCAAGTCAATGGAGCTCAGAAGCGTAACAACAAGCT
CCCAGTCTCACTTCCAGCAACAGCGGACGTCAACTACCTGGTTCCATCAT
TATGCATCGGCACCAGAATTGCTGGCCAAGGCGTCGGCGCTCTTGGGGGT
GGAAGATTACCGCCTGTGGGAAGAGCCGCAGACAGTGCGATACCGGGCTG
GCGAGAGATTCAACTGGCACTTGGACGCTTTACCACCCGCCGAGACTGGG
GTATCGAAAGGCGGACAGCGCACGGCTACCGTCCTGGTCCTGGCTCGGAT
ACGGGAAAAACATGGCTTTAACTTTTTCAACGAAAATATTTTCCCTTCCA
TCCGTCTCCTACACGCTGACCCTGTGGTTTTCGAAGTAGAGGATTTTTTC
ACCCCTCAAGAGTGCGACACTTACGTGAAAATGTCCACGGAGTCTCAGTC
AGGGCGAAGGAAGGGTGGCTTCAAGTCAATGGAGCTCAGAAGCGTAACAA
CAAGCTCCCAGTCTCACTTCCAGCAACAGCGGACGTCAACTACCTGGTTC
CATCATTATGCATCGGCACCAGAATTGCTGGCCAAGGCGTCGGCGCTCTT
GGGGGTGGAAGATTACCGCCTGTGGGAAGAGCCGCAGACAGTGCGATACC
GGGCTGGCGAGAGATTCAACTGGCACTTGGACGCTTTACCACCCGCCGAG
ACTGGGGTATCGAAAGGCGGACAGCGCACGGCTACCGTCCTGGTTTACCT
AACGGACATGGACGTAAACGCTGGTGGCGCAACCGCTTTTCGAGACCTTG
GCCCACTGCGTGTTCGCCCCAAGAAGGGAAAGTGCTTGGTGTTTTTTCCA
TCATTCGGGGGTGAGGCAGGGTCCCCGTTCGACCTCCGAACTCTACATGC
GGGAGAAGTTGTGGGAGAGGTGGCAGGCAAGGGGAAGACTTCAAAGGCCA
AGTATATTGCGCAACTTTGGTGCCACAAGAAGCCTTATCCACCTTCCGTT
CCAGTTGGGTCTTCACACGAGGCAGCTGAGGAGTGCATCGCTGATTATTT
TAGGCGGTGGATAGGCAAAGAGATGACTCATGATACTGCTGTGTATTAAG
TTTACCTAACGGACATGGACGTAAACGCTGGTGGCGCAACCGCTTTTCGA
GACCTTGGCCCACTGCGTGTTCGCCCCAAGAAGGGAAAGTGCTTGGTGTT
TTTTCCATCATTCGGGGGTGAGGCAGGGTCCCCGTTCGACCTCCGAACTC
TACATGCGGGAGAAGTTGTGGGAGAGGTGGCAGGCAAGGGGAAGACTTCA
AAGGCCAAGTATATTGCGCAACTTTGGTGCCACAAGAAGCCTTATCCACC
TTCCGTTCCAGTTGGGTCTTCACACGAGGCAGCTGAGGAGTGCATCGCTG
ATTATTTTAGGCGGTGGATAGGCAAAGAGATGACTCATGATACTGCTGTG
TATTAA
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