mRNA_F-serratus_M_contig1045.458.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1045.458.1
Unique NamemRNA_F-serratus_M_contig1045.458.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1045.458.1 vs. uniprot
Match: D8LRR4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRR4_ECTSI)

HSP 1 Score: 246 bits (629), Expect = 5.750e-74
Identity = 126/185 (68.11%), Postives = 150/185 (81.08%), Query Frame = 2
Query:   89 PQRRQGVPRLEASPMDRFMSGLEKMMNGQPEEDAGDSVAQGAG--DSKDLDGFRSSLIQQTRRTESLK--QEFSGYDMFDLIVDKFDVPYDVQINKTVFAGKPVLCFNVMWKYLGQSSFHLGEQEYLEHLQALAELLQEWDRVDQFKKALAETRKRPNPYFGYAVALPLDLPPDTLAGYFADSYF 631
            P R Q V +L ASPM++FMSGLEKMM G   E + D+  +     + +D+  FR SLI+Q+R+ +SLK  +EF+GYDM+DLIVDKFDVPYDVQINKTV+ GKPVLCFN+MWK+LGQSSF L EQEYLEHLQALAELL EWDRVDQFK++LA+T+KRP  YFGYAVALPLDL PDT+  YF DSYF
Sbjct:   39 PDRCQSVGKLSASPMEKFMSGLEKMMTGPQLEGSMDTPQEQEQQEEPQDMSAFRESLIRQSRK-DSLKKKEEFTGYDMYDLIVDKFDVPYDVQINKTVWMGKPVLCFNIMWKHLGQSSFPLSEQEYLEHLQALAELLMEWDRVDQFKRSLADTKKRPQSYFGYAVALPLDLDPDTMVDYFDDSYF 222          
BLAST of mRNA_F-serratus_M_contig1045.458.1 vs. uniprot
Match: A0A835ZDV8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDV8_9STRA)

HSP 1 Score: 155 bits (392), Expect = 5.810e-41
Identity = 74/130 (56.92%), Postives = 95/130 (73.08%), Query Frame = 2
Query:  239 FRSSLIQQTRRTESLKQEFSGYDMFDLIVDKFDVPYDVQINKTVFAGKPVLCFNVMWKYLGQSSFHLGEQEYLEHLQALAELLQEWDRVDQFKKALAETRKRPNPYFGYAVALPLDLPPDTLAGYFADSY 628
            FR++L +Q + T+  + +F GY + DLIVDK+  P D+QI K VFAGKP+L  NVMWKYLGQ SFHL E+EYLEHL+A+A+LL +WDRVD     +   RKRP  YFGYAV+LPLDL PD+L   F + +
Sbjct:    4 FRATLNKQIKTTQD-EDKFDGYKLCDLIVDKWGAPLDIQIKKEVFAGKPLLYLNVMWKYLGQQSFHLNEREYLEHLEAIAQLLHKWDRVDHVIDLIKTCRKRPQAYFGYAVSLPLDLDPDSLLPIFPEEF 132          
BLAST of mRNA_F-serratus_M_contig1045.458.1 vs. uniprot
Match: L1IPD9_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IPD9_GUITC)

HSP 1 Score: 153 bits (386), Expect = 3.520e-39
Identity = 76/137 (55.47%), Postives = 96/137 (70.07%), Query Frame = 2
Query:  194 DSVAQGAGDSKDLDGFRSSLIQQTRRTESLKQEFSGYDMFDLIVDKFDVPYDVQINKTVFAGKPVLCFNVMWKYLGQSSFHLGEQEYLEHLQALAELLQEWDRVDQFKKALAETRKRPNPYFGYAVALPLDLPPDTL 604
            D  +  A D + ++ FRS + Q  +  +S  +EF GY   DLIV+K+ VPYDVQI +  F GKP++ FNVMWK+ GQ SF L E EYLEHLQ LAEL  +WDRVD  K+ +A+ RKRPN YFGYAVALPLDLP + +
Sbjct:   60 DDASANAYDEESIEAFRSLMQQSWKGKKSESKEFDGYAFRDLIVEKWGVPYDVQIKREYFLGKPMIFFNVMWKWCGQQSFPLTETEYLEHLQFLAELCVKWDRVDLLKEEIAKCRKRPNGYFGYAVALPLDLPQEVM 196          
BLAST of mRNA_F-serratus_M_contig1045.458.1 vs. uniprot
Match: A0A7S0YUK4_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YUK4_9CRYP)

HSP 1 Score: 146 bits (368), Expect = 1.460e-36
Identity = 75/145 (51.72%), Postives = 93/145 (64.14%), Query Frame = 2
Query:  200 VAQGAGDSKDLDGFRSSLIQQTRRTESLKQE----FSGYDMFDLIVDKFDVPYDVQINKTVFAGKPVLCFNVMWKYLGQSSFHLGEQEYLEHLQALAELLQEWDRVDQFKKALAETRKRPNPYFGYAVALPLDLPPDTLAGYFAD 622
            ++ G  D  D+D FRS L  Q  + E    E      GY + DLIV K+ VPYDVQI + VF GKP+L  NVMWKY GQ SFHL EQEYLEHLQ +AEL+ +W+RV+  KK + + +KRP  YFGYAV + LDLP D +     D
Sbjct:   67 MSAGGDDEVDMDAFRSMLSDQWNKEEVAVAEDDGLLDGYKLRDLIVAKWGVPYDVQIQRGVFLGKPLLFLNVMWKYYGQQSFHLTEQEYLEHLQFIAELINKWERVEHVKKVIDDCQKRPAGYFGYAVPIALDLPADVMKDIGGD 211          
BLAST of mRNA_F-serratus_M_contig1045.458.1 vs. uniprot
Match: A0A7S0XWG0_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0XWG0_HEMAN)

HSP 1 Score: 146 bits (368), Expect = 4.200e-36
Identity = 77/145 (53.10%), Postives = 93/145 (64.14%), Query Frame = 2
Query:  200 VAQGAGDSKDLDGFRSSLIQQTRRTESLKQE----FSGYDMFDLIVDKFDVPYDVQINKTVFAGKPVLCFNVMWKYLGQSSFHLGEQEYLEHLQALAELLQEWDRVDQFKKALAETRKRPNPYFGYAVALPLDLPPDTLAGYFAD 622
            +A G     D+D FRS L  Q  + E    E      GY + DLIV K+ VPYDVQI + VF GKP+L  NVMWK+ GQ SFHL EQEYLEHLQ +AELL +W+RVD  KK +A+ +KRP  YFGYAV + LDLP D +     D
Sbjct:   90 MAAGGEGEVDMDAFRSMLSDQWNKEEVAVVEDDGLLDGYKLRDLIVAKWGVPYDVQIQRGVFLGKPLLFLNVMWKHYGQQSFHLTEQEYLEHLQFIAELLNKWERVDHVKKLIADCKKRPAGYFGYAVPIALDLPADIMKDIGGD 234          
BLAST of mRNA_F-serratus_M_contig1045.458.1 vs. uniprot
Match: A0A4D9CNG2_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CNG2_9STRA)

HSP 1 Score: 117 bits (292), Expect = 4.400e-27
Identity = 56/129 (43.41%), Postives = 83/129 (64.34%), Query Frame = 2
Query:  239 FRSSLIQQTRRTESLKQEFSGYDMFDLIVDKFDVPYDVQINKTVFAGKPVLCFNVMWKYLGQSSFHLGEQEYLEHLQALAELLQEWDRVDQFKKALAETRKRPNPYFGYAVALPLDLPPDTLAGYFADS 625
            +R  ++Q     +++  E  GY +FD+IV K+ VPY V++ +  FAGK +L  NVMWKYLGQ SF L E++YLEHL+ ++  L +W +V  FKK L E RK+PN YFGYAV+  + +    +  +  D+
Sbjct:    4 YRKKVLQDLVERKNIG-ELDGYQLFDMIVAKWGVPYGVELRRMDFAGKKLLYINVMWKYLGQQSFPLNERQYLEHLEYISRKLVQWGKVADFKKDLTECRKKPNAYFGYAVSFNVPVSEAEIDQFVEDA 131          
BLAST of mRNA_F-serratus_M_contig1045.458.1 vs. uniprot
Match: W7TIL0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIL0_9STRA)

HSP 1 Score: 119 bits (297), Expect = 4.770e-27
Identity = 58/135 (42.96%), Postives = 86/135 (63.70%), Query Frame = 2
Query:  221 SKDLDGFRSSLIQQTRRTESLKQEFSGYDMFDLIVDKFDVPYDVQINKTVFAGKPVLCFNVMWKYLGQSSFHLGEQEYLEHLQALAELLQEWDRVDQFKKALAETRKRPNPYFGYAVALPLDLPPDTLAGYFADS 625
            S  +  +R  ++Q     +++  E  GY +FD+IV K+ VPY V++ +  FAGK +L  NVMWKYLGQ SF L E++YLEHL+ ++  L +W +V  FKK LAE RK+PN YFGYAV+  + +    +  +  D+
Sbjct:   56 SPSMQEYRKKVLQDLVERKNIG-ELDGYQLFDMIVAKWGVPYGVELRRMDFAGKKLLYINVMWKYLGQQSFPLNERQYLEHLEYISRKLVQWGKVADFKKDLAECRKKPNAYFGYAVSFNVPVSEAEIDQFVEDA 189          
BLAST of mRNA_F-serratus_M_contig1045.458.1 vs. uniprot
Match: D8RII9_SELML (Uncharacterized protein (Fragment) n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RII9_SELML)

HSP 1 Score: 82.0 bits (201), Expect = 5.620e-15
Identity = 45/102 (44.12%), Postives = 60/102 (58.82%), Query Frame = 2
Query:  284 KQEFSGYDMFDLIVDKFDVPYDVQINKTVFAGKPVLCFNVMWKYLGQSSFHLGEQEYLEHLQALAELLQEWDRVDQFKKALAETRKRPNPYFGYAVALPLDL 589
            +  FSG D+  LI  K+   YDVQ+ K  F GK  L  NVMWKY  Q SF L E+EYL HL  +A  L+ W  V   + +L +T++RP    G AV+L +D+
Sbjct:   12 EMSFSGIDLAGLIRKKYGRSYDVQLIKKEFLGKQYLAMNVMWKYREQRSFPLSEEEYLLHLDDVANALKCWGAVSVIRSSLEKTKERPR--IGKAVSLFIDM 111          
BLAST of mRNA_F-serratus_M_contig1045.458.1 vs. uniprot
Match: H1WCS9_9CYAN (Uncharacterized protein n=4 Tax=Oscillatoriales TaxID=1150 RepID=H1WCS9_9CYAN)

HSP 1 Score: 80.5 bits (197), Expect = 1.220e-14
Identity = 43/98 (43.88%), Postives = 62/98 (63.27%), Query Frame = 2
Query:  296 SGYDMFDLIVDKFDVPYDVQINKTVFAGKPVLCFNVMWKYLGQSSFHLGEQEYLEHLQALAELLQEWDRVDQFKKALAETRKRPNPYFGYAVALPLDL 589
            +G D+  L+++K+ V YD+Q+ +T   GK  +   VMWKYL Q+SFHLGE EYL+HL A+A+ L      +Q    +  TR RP    G AV++P+DL
Sbjct:    7 TGQDLRQLLLNKWGVSYDIQLRRT--RGK--IFVQVMWKYLEQASFHLGEAEYLDHLNAIADYLTSLGGAEQVTNYILNTRDRPR--LGKAVSIPIDL 98          
BLAST of mRNA_F-serratus_M_contig1045.458.1 vs. uniprot
Match: A0A176W4A7_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176W4A7_MARPO)

HSP 1 Score: 82.8 bits (203), Expect = 2.950e-14
Identity = 52/137 (37.96%), Postives = 73/137 (53.28%), Query Frame = 2
Query:  200 VAQGAGDSKDLDGFRSSLI-------QQTRRTESLKQEFSGYDMFDLIVDKFDVPYDVQINKTVFAGKPVLCFNVMWKYLGQSSFHLGEQEYLEHLQALAELLQEWDRVDQFKKALAETRKRPNPYFGYAVALPLDL 589
             A G  + +D DG  SS +       Q  R   S    F G D+  LI  K+   YDVQ+ K  F G+ +L  NVMWKY  Q SF L E+EYL HL  +A+ L+ W  V   + +L +TR+RP    G AV++ +++
Sbjct:   71 AAIGKDEPEDTDGESSSDVDPEQFRKQMERMLSSHDDRFEGKDLATLIRQKYGRSYDVQLVKKEFLGRQLLAMNVMWKYREQRSFPLTEEEYLLHLDYIAQNLRGWGAVSYVRDSLEKTRERPR--IGKAVSIFIEV 205          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1045.458.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRR4_ECTSI5.750e-7468.11Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZDV8_9STRA5.810e-4156.92Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
L1IPD9_GUITC3.520e-3955.47Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A7S0YUK4_9CRYP1.460e-3651.72Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S0XWG0_HEMAN4.200e-3653.10Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]
A0A4D9CNG2_9STRA4.400e-2743.41Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7TIL0_9STRA4.770e-2742.96Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
D8RII9_SELML5.620e-1544.12Uncharacterized protein (Fragment) n=3 Tax=Selagin... [more]
H1WCS9_9CYAN1.220e-1443.88Uncharacterized protein n=4 Tax=Oscillatoriales Ta... [more]
A0A176W4A7_MARPO2.950e-1437.96Uncharacterized protein n=2 Tax=Marchantia polymor... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1045contigF-serratus_M_contig1045:105991..116468 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score236.5
Seed ortholog evalue9.1e-60
Seed eggNOG ortholog2880.D8LRR4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain of unknown function (DUF3067)
EggNOG OGs2AH3C@1,2S9WY@2759
Ec32 ortholog descriptionProtein of unknown function DUF3067
Ec32 orthologEc-08_002130.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size2006
Cds size504
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928860.7528396-UTR-F-serratus_M_contig1045:105990..1073621622928860.7528396-UTR-F-serratus_M_contig1045:105990..107362Fucus serratus maleUTRF-serratus_M_contig1045 105991..107362 -
1690962605.0830014-UTR-F-serratus_M_contig1045:105990..1073621690962605.0830014-UTR-F-serratus_M_contig1045:105990..107362Fucus serratus maleUTRF-serratus_M_contig1045 105991..107362 -
1622928860.8253083-UTR-F-serratus_M_contig1045:108867..1088941622928860.8253083-UTR-F-serratus_M_contig1045:108867..108894Fucus serratus maleUTRF-serratus_M_contig1045 108868..108894 -
1690962605.1439555-UTR-F-serratus_M_contig1045:108867..1088941690962605.1439555-UTR-F-serratus_M_contig1045:108867..108894Fucus serratus maleUTRF-serratus_M_contig1045 108868..108894 -
1622928860.84058-UTR-F-serratus_M_contig1045:116365..1164681622928860.84058-UTR-F-serratus_M_contig1045:116365..116468Fucus serratus maleUTRF-serratus_M_contig1045 116366..116468 -
1690962605.1527965-UTR-F-serratus_M_contig1045:116365..1164681690962605.1527965-UTR-F-serratus_M_contig1045:116365..116468Fucus serratus maleUTRF-serratus_M_contig1045 116366..116468 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928860.7667449-CDS-F-serratus_M_contig1045:107362..1074951622928860.7667449-CDS-F-serratus_M_contig1045:107362..107495Fucus serratus maleCDSF-serratus_M_contig1045 107363..107495 -
1690962605.0930545-CDS-F-serratus_M_contig1045:107362..1074951690962605.0930545-CDS-F-serratus_M_contig1045:107362..107495Fucus serratus maleCDSF-serratus_M_contig1045 107363..107495 -
1622928860.7781203-CDS-F-serratus_M_contig1045:107981..1080711622928860.7781203-CDS-F-serratus_M_contig1045:107981..108071Fucus serratus maleCDSF-serratus_M_contig1045 107982..108071 -
1690962605.109298-CDS-F-serratus_M_contig1045:107981..1080711690962605.109298-CDS-F-serratus_M_contig1045:107981..108071Fucus serratus maleCDSF-serratus_M_contig1045 107982..108071 -
1622928860.791485-CDS-F-serratus_M_contig1045:108310..1084541622928860.791485-CDS-F-serratus_M_contig1045:108310..108454Fucus serratus maleCDSF-serratus_M_contig1045 108311..108454 -
1690962605.1213639-CDS-F-serratus_M_contig1045:108310..1084541690962605.1213639-CDS-F-serratus_M_contig1045:108310..108454Fucus serratus maleCDSF-serratus_M_contig1045 108311..108454 -
1622928860.8095045-CDS-F-serratus_M_contig1045:108730..1088671622928860.8095045-CDS-F-serratus_M_contig1045:108730..108867Fucus serratus maleCDSF-serratus_M_contig1045 108731..108867 -
1690962605.1317222-CDS-F-serratus_M_contig1045:108730..1088671690962605.1317222-CDS-F-serratus_M_contig1045:108730..108867Fucus serratus maleCDSF-serratus_M_contig1045 108731..108867 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1045.458.1prot_F-serratus_M_contig1045.458.1Fucus serratus malepolypeptideF-serratus_M_contig1045 107363..108867 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1045.458.1

>prot_F-serratus_M_contig1045.458.1 ID=prot_F-serratus_M_contig1045.458.1|Name=mRNA_F-serratus_M_contig1045.458.1|organism=Fucus serratus male|type=polypeptide|length=168bp
MDRFMSGLEKMMNGQPEEDAGDSVAQGAGDSKDLDGFRSSLIQQTRRTES
LKQEFSGYDMFDLIVDKFDVPYDVQINKTVFAGKPVLCFNVMWKYLGQSS
FHLGEQEYLEHLQALAELLQEWDRVDQFKKALAETRKRPNPYFGYAVALP
LDLPPDTLAGYFADSYF*
back to top

mRNA from alignment at F-serratus_M_contig1045:105991..116468-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1045.458.1 ID=mRNA_F-serratus_M_contig1045.458.1|Name=mRNA_F-serratus_M_contig1045.458.1|organism=Fucus serratus male|type=mRNA|length=10478bp|location=Sequence derived from alignment at F-serratus_M_contig1045:105991..116468- (Fucus serratus male)
TTTTTTGTTGATTTTGTCAAGAACAAGCGCATTTTACACTCAAGCGGGCC TCTCGGGCCTGACGAAGACGGAGGGGAGTGCTTTCAGTCCCCAGCGACGT CAGGTAAGCATCTCGCTCGAAATAGCAGCCTCATGGTCCTTGCATTACGT GTTCGCGAAAGAAAATATTTTGATTCAGACATCGAACCAAGCAGGGATGA CAGGGCACTCCGTGTCCTACTTGTCACCCTTTCCCTGATTTTCTGTCGCC TTTCATGACACATGGCTTCCCTCGATCAAGTTGAACCTTGTCAGTACTAT AGTAACAATTTGTAAACATGCGAAATACCGCCGGTATTGCACAGGAAGTG ACTGTATGACTGCATGAAAAGCTCTGGTGACTCTTGTTTACGTATTGATG TAAGTTCTCGTTCAAGTTCAGCAAGACTAAAAAAACATGAACATGACGTC CCTGATTCACCTTGTATGATGTTCTGGATGTTTAAAGAAAAATCAAAACA GCACCTAGACTTTTTGAGCATCCCCCGTAGGGGGAGGAAATGTCAAAACG TTTAGGCGGGGTCAAAGGCTACAGTGACAAAAACCTCTTCATGGTATTAA ACAGGTTCCCCAATGTAGATAACATTGGGTCAACAATATAATGTCGGGGA GAAACCCACCGTTATACTGTACATTTACATTAATCTCCATGCAGGGACAC CATAAAAACATTAGACAAAAACCAGAGACAGAGTAGTATTACCTCCAAAT GGTATTTTAATAGTAATTTTGTATGTTGTTCTGGATGAACGACAGGACGC TCAGATATTACACAAGCACTGCATGACCTAGCGACTCCCTTTTTTATTTG TGCTGCCTTTCGGAGGCAACTGGTTAGCTGCACTTGACGAAACTTGCTGA GGAGTCTTGGTTTCGAGTTCGAGACCGCGGCACAGGATGTCCATTCCAGC ATGTCACACCCTTGTACAAATTATGAGATTCCTCTTAGTGGCACTCTAAG CGCCATCTGTTGCAATTTCCACATTCCATCTCGAAGCATGACTCAGACAG CAGCTCAGTTGGTCGCCACGCGCTTCCAAAGAAGACGACCTGAATGTTCA GGTTTTCCCTAAAGTACCGACACCGCCGCTAGAAGACCACCAGAAGCTTC GGACGTTCGTCTAGAATTCGACTCAGGTTGAAACTTTACCAGTTAATTCC CACACACACTCGCACACGCACACACGCACGCACTCTGGCACACACCACAC CACATACACGAGCGCGCGCGCGCGGTTTGTTCGTGCAATTAAATTATTAA ATTAGCATTCACCAGCATAATAAACATAAAGCGTCGACAAGAGAGAATCA GCGGTACAAAGAGAGTAGTGTAGGTGTCGAACGACGGCAGCAAGATGAAA ATAAGGAAGCGGAGGGGGGAGCGCAAGACGGTGGAGTCCTATAAACTCTC TTTTTATAGTTATACGACATAATTTGTCGCGTATAATCAGGGTTTTCGTG TCAAAAATAATCCTTGATCCGCCCCTGGGGAGAATCGATACGAGTAGCAT ATAATAAAATGGCACGATATGCCGAATCGCGCGATTATGTGCAACTAAAT GGATACATGCAAACACACACAAAGTATCATTGATCCCCCCTCGGGATGAT CAATGCGAGTGGCATAGAAGGACTAGGATGACAGGGCCGGATTGCGCGGT TATGTGCAATTTAATAAATACACACACACACACACACACACACACACACA CACACACGGAAAGGGATGAGTAACCAAAACGTAAAGCTTCGACGAGAAGA GGAGAGCGTCGATCCTGAACAGTAGATGCCCACTGTGACCGGCAAATTGA CAATAAGGAAGCGATGAGGGAATTTAAGACGCTTGAGGGTTGCAGAAGAA CCGCACAGTGTATCTATCTCCTCAGAGGTTTTTGTGACAACATCAATCAT CGATGCCCCGATGGTAGGACTATTACTATTAGTAGTAAAATATAACAAAT GGCAGGACGGGGCCGGGTTGCGCAGTTATGTGCAACTTAAATCAACATGG AAAAAAGGGGAGCGCAAGATGCTGAGAAACTGTCCTGTACTGTAGGTAGA GTGTGCCTCCTTTGTCGCGTTTATCAGAGTTGCGTGGCAGCAACGAGCCT TGATCTCCTATGAAGAGGACCAACGCGGTGATGATAGAGTGGCTAGCTAC GGTAGCATTACGGTAATATGCCATTTCATTAACACGCTCTCAAAGAGGTT TTCGTGACAACAATCATTGATCCCCTAGTGGAAGGGGCAACATGAAAAGC CTACAAGTAGAGAATAACTAATACTCTATTAGATCGACAGTACTAGATTG CGCAGTCATGCAAATTCCCACGAATCCACACACTCGCAAACACACAAGGG CAGCAGAGAGAGTCTATCTCCTTGGACGCTTCTCATCAGAGGTTTTTATG ACAGTAATAATTGATTCCCCAATGGGGAGAGCAAATACGAATGCAGTAGC TTATACTAATGAGCACAACGAGGCCGGAATGCGTGGAGGATATCATTACT GATACCTTTCCGTTGCCTTGTTAACAAGATGACTTAAGTCTGATGAAGTA CAGGCTCTACTGTAACTCGATTCAGTTTGCATCCCCTTGTCAGTAACATA AGTTTCCATACATCATTCCGCCAGCGCTGCACCACCTGCCTTTCACTTCC GTTCCGCTTGGACAATTTACCTGTACTTGTGATATTTGTGTCCCGACACA CCCTTGCGATGTTCGTACCTATCAGCAGACTGTGTTTATTTTCATCATAG TCCGCGTCATCCCCTCTCCTGTTTATATGGCTTAATACTTAATACTCACC GAGTGCTCGGGTTACGACGGTATATAACAACAGGGCGTACTACGGCGGTG TTATAGCTACAGTGGCCAACCTCCTCCCCCCTCCCCGCCCGTCCCTGAGA GTTCTATTTGACGCACAGACGACTGGATCTCTCTCACGCGATAAAGCCAC AATCTGCCATACGAGGTATTTGGTGGCGGTTTAGTGCAAGTAATGGATTA CAGACCTGGACAATCAAGGCATATGATGTGCGTGTTTGTAGTATTCGGTA GGTATAATGAATTACGGGAGTTGGGGGTTTGCAAGGTTTGCAGGAGGCAT GCTTGTGGAATCTGGGGAGTAAGCTCTACGGAGCCTCATCCTCTCACTCT TAAATACCTCGTTAATACCTCGGTAATCAGGAAAGGAATTGAGTCAACCT TCTGGTGCAAGGCGCCACGGCCAAGTGCTCGCGTGTTAACTTTAAGTCAC GCCCCAACACCCAAACACGATATCGGTTCTAGGTCGTGAAGGCTCGCGAG CCGTTGGCACAGCAAAAAGGTGCCGTGGGCCTTCTCTTTCGGGTGGCATA AATCCTGTTTGCCTAGATTATGTCTCAAGCCCTACCGCACGGGTGGCATA AACCCCGAGGTGTGTGTGTGTACAAGGTTCGGGTGGCATAAATCATGTTC GGGTAGGTTGTGTCTTAAGCTCTACCGTGCAGGTGGCATAAACCCCGAGA TGTGTGTGTGTGTATACAAGGAATTTTAGGTATAGAGAATGGGAAGAATG GAAGGCTGCAGCGACGTTCGTCAGGCCCGTTGCAACAGCAGCAGCCGTAT CAACAGAGACGTCCGCAGCAGCATCAACAGTTCACCCCCAAGGCTGAGAG GCGATGAAACGTGTTTTCGTCGACCTTAACGGACCGTACTTGACGTCCGT GAGTGGGATACGGTATTGCATGCTTGTGGTAGACGACTGTACGAACGTAG GTTGGACGCTGTTCTTGAGGGATACGAGTGGTGATACCTTGTGCCAGGCC TTTCGAGCGTGGCACACCACCGTCAAGAGCACTGCAGCCATTCACGGAGG GTTGGAGATCGCACGCTTCGACAACGGCTACGAATTCACCATTGCTGGTT TTCGGAAGCTGCTGACAGAGCTTGGGGTGGCGGTGGAGTATACGCCTGTC GACGGTGCTGAGCGGAATGGTGGCGTCAAGAAGAAGTTGGCGCTCTTTGC TAAGGGAGCGCGTGCGGCTTGGCTAGAGTTCCCTCGTCACTTCCCGGACT TGGAGTTTCCTGCGTTGGCGAACTCGTGGCATCAGATCTGGCCCGAGGCG TTCTCGTGGATGAACGACTGCTTGAACACCACGGCACAGGCGCACACTCC GGATCAACTAAGCCCCTACTAGAGGTTATATAAGAAGCGCCCACCTAATC ACCCTCTATCGTTCATGATGCCGGGCTTCCGCCGCCACAACAGGGAGAAC AAGGCGGAGTCTAAAGGTGAGCGCTGCTTTTTCCTCAACTCCGGCAACAA CCATTCCTTTACGACCGACAAGACCCTACTGCCCTCAGGCATCGCTAGCT ACTCTGCGGATGTGACCTGGGGATACCGGCGGCGGCCTTTTGTTGGAGTT GCCCACATGGGAGGGTGGGTTTTTCTGTAAAACCTGCGGGGGCTAGTAGC ATCGGCGGTAATATCTTCCCCACTGCGTCGGCGGGGATGATGGCCAGTGT CCCTGCTACCGCAGGATCGAGAGGAGCAGCACCTGCGGTGGCCAGTGGCT CCGGTGGCAGTACCTTCCCCGCTGAATCGGCGGGGATAATGGCCGGTGCC CCCGCTGCTGCAGGATCGGTGGGAACGGCGATTAGTGGTACTGTTTTTTC GGCCGCATCAGTTAGGGGGACAGTTGGGGTACACAAGTCATCCGCTGGAG CGATGTCATCGGACGCGGCAGCGAAGGCGGCACCGTTGACAGGCGACACT CTGTTCCCTGATGCGTCGGTGGAGAGGGCGGATGGACAGCTCACGATGGA AGAGTCGTCTGCTGGAACAGCGGCATCGGACGCGGTAGCAGAGGCGGTAC CGTTAACAGACGATACTACTGCCTCTGATGCGTCGGTGGAGAGGGTGGCT GAAAAGCTCACCTTAAAAGCTGGGCCGTCTCGCGAAATCTGCGGCAAAAG GGGAGCGTCGACCCACCCCTTTGATCCCGGTACCGTGTTTCCACTGGAAG TTCGCTACAGTAGCGAAGACCGAGCCGAATATAACAGCAGTGGTGGCGGC GGCAGCAGGATGAGTAGCCACGACACCACCAGAACCACGACTCATGGTGG GATGCGAACTGTTACGGAGTACTGCTGCGCCCCTTTGATCCAGGGAAGCA ATGCTGGCGGAGTGCGAGGAGGGTAAAAGCAGTTCCCGGTCTGGATCTCC CTTTTGACTGCGGGAAAGAATGGGGGAGGATACACAGCATGAAGGGTGAC GGGCTTTGTGCTGAGGGGTGTGCGGGAGGTCAGCATCTCATTACCCGTAG CGCATCTATATTTTGGTTGTTCGCTCAAAGGGATGGTCTGAAGTTTATGC CCATATTGTTGCTTCTGTGCCTGACCTTCAGTTGTTTTTCTATTTGATAC TGAAATTGGTGCCTGGTACATTAAGTTCTTACAGTTGAAGTCGAACAAAC TCTCGTTTTTATGTTACAGTACAGATTTAGGCACGATCTGATTTTTCGTT AAACAACAGTAAACTGCTGGCGGCATGTCAGTAGGAAATTGAAGTGGGCT ACCAACTTTTCCTAAAGTACGGTACAGTAGTAAAGACACTGGATAAGTTG CGTGAATGAGTACTACATGCCCGCCCCATGACTGACTCAACCTCGTAAAC CATTTTTCTTTACTTGCTCGATGCAATATTCTTCCTCGAGTTGCAAACAA ACGGTAGGGTAAGTTATATGTATATTTCTTGGAAATTTCTGGGCTCTGTA TTTTCCAATGACGTGTTCGCCAAATTTGTACGGCGTATTGAATGTTGACG TATACTATTAATAATCCCAAAGTTCTGCACTGTACGTCGCGATCAGACGC AGGAAGATTATATTATGACACAGATTGATTGTCGCGGGTTCAATTCCCGA TGTAACAAAATGTTTTCCTTTTGATACTCTGGTCAATGAGTACTGGACTT TGCACGACTTTGTCACCAAACCGGAATTTCGTAATGAATATATTTTTGTA CTGCTTACGAAATTCATGCGGGGGGGGGATACGATGTCATGATCATCGAC GCAGTACAAACATATTTCTTGTTTCGGGGGGAAAGGAAATATAGTATTCA TTTTGTAGCCTGGTTTGACCTTACAATGCCCCATCACATGTGATGGCAGA CCAGTTTGCATCTCCACGTTTTATCTGCAGATTGGGGGGGCGGAATATTC ATTTTGCAGTTTGTATCTCCACGTTCTATCTGCAGATTGGGGGGGCATAA TATTCATTTTGTGGCCTGGTTTGAACCTACATACGATGTCATGTTCATCG ACACAGTACAAACATATTTCTTGTTTCGGAGGGAAAGGAAATATAGTATT CATTTTGTAACCTGGTTTGAACTTACAATGCCCCATCGTATGTGATGACA GACCAGTTTGCATCTCCACGTTTTATCTGCAGATTGGGGGGGCGGAATAT ACATTTTATAGCCTGGTTTGAACCTACGTTGCCCTATGGCATGTGATGAC AGACCTGTCTGCATCTTCGCGTTTTATCTGTGGAATCGAGAGGGGGGGTA TTCATATTGTGTCCTGGTTTAAACCTGCAGCTCGCCCCCGCGGTAACTGC TAACAGGCATTTTCATGTTACGGTACCGCGTTTTCCCTGCGTCAGTATCC GAAACATTGGATTCGGGGGCGGAATTTTCATATTGTAACCTGTTTTGAAT CTACATTGCCCCATGGCTTGTGTGATGACAGACCTGTTTGGTAACTGCTA ACAGGCATTTTCTGTTACAGTACCGCGTTTTCCCTGCGGTGCTATCCAAA ACATTCGATTGGCATGTTTTCTTTTTGAGAATGATAAGGGTAGAGAGCCA ATATGAACTAATGTTGTTGTGTTGAAGTTACACTTGGATTGAGAATTTGG CGTGAAAAACTCAGGCTTTCGGATGCGATATTTTTCTTGAGGGGCTGATT GTTGTTAATTTGAATTATGCATGTTGCTGATATTTCCTGACATAAATTGG GAAATTGGGAAGGATAATGTTCGACCTGAAGGAAAAATAAAATAAAATAA TGAGCTTTGACTTGGTTTTGTTTTTCCTGATATTTCTGGACCAACGGGTG TTCGTGATCACTATACCGTACCGGTTAGGGGGGCTGACCAACTGGTGTTC GTAATCATTATACCGTACCTCTAGGGGGGCTGTTTGTAGTATTCGGTAGG TATAATGAATTACGGGAGTTGGGGGTTTGCAAGGTGCGCAGGAGGCATGC TTGAGGAATCTGGGGAGTAAGCTTTACGGAGCCTCATCTTCTCACTCGTA AATACCTCGTCAATACCTCGGTAATCAGGAAAGGAATTGAGTCAACCTTC TGGTGCAAAACGGCGGCCAAGTGCTCGCGTGTTAACTTTATGTTACGCCC CAACACCTAAACAGGGCGAAATGACGAAAAAGTCGCCAGCGATTCCGCGT GACAGTATTTTTCATACTTGACCGATTAATCGTTGTTGAACGTACCTGTA TCGGTTTTGTGTTTGGTCGCGTAGGGCGTCCCGCGTTTGGAAGCGAGCCC CATGGACAGGTTCATGAGCGGGTTGGAAAAAATGATGAATGGGCAGCCCG AGGAGGATGCTGGCGACAGCGTCGCGCAGGGGGCGGGAGATTCGAAGGAC TTGGATGGCTTCCGCAGCAGTTTGATCCAGCAGACCAGGTGTTGTATTTC ACTACACTCTTCGGCCATGCCGGCAAATACCTTGGTCAACCGCATGCTAT TTCCGCAGTCAACTCCCTTACCACCTCGTCCTGGTAGAAGTATACTTACA TATACAATATACAGAGTAATGTTCTACATAAGCGTTTTACCGCCAACGTA ACGAGTAGGTCGATACCTGCAGGTTTATCCGAGGGAAATCCTCACGGCGC CAATGACGTCCTTGACCCTTCTGGGCTCTTGCCCTCCTGCCCTGTCCGCC GTGAGTACGGTGAGAAGGACAGAAAGCTTGAAGCAAGAATTCAGCGGTTA CGACATGTTCGACCTGATCGTAGACAAGTTCGACGTGCCGTACGACGTGC AGATCAACAAGACCGTCTTTGCGGGCAAGCCCGTACTGTGTTTCAACGTC ATGTGGAAGTGAGTCGGTCTTGGCTGTTTCTTTAGCATGCCCTCATCCGT CCAGCATTGCGGTTGTACTAATAGTTTGTTAATGTTTTTATAATAGTTGG TGAGTGGAAACTCGATGTTGCTGGCTCTTTCACCGCTGACTGGTCGCCAG CTCATCTGGGCGTGCGAACTTCCAACCGACAAGCTTGTTCCGTACTAGAT TCGTGATACTCGTGGTGACGCCTCAGCCCCTCGACCAAACCATGCAGATA CCTCGGACAGAGCAGCTTCCACTTGGGGGAACAAGAGTACTTGGAACACC TTCAGGCGCTTGCAGAACTCCTTCAGGAGTGGGACAGGTGAGAGCTCGCG GGTCTCCTTGGTGTTTGGGCCCTATCTCCGTCTTCTCTGGGATACTGCAC TGCTTGGGTGAAACATTCCTGAGTGTCACTACGACCGCCCGAACACCTTC GTTCCAAGCGTTGTTACCTGTGTATTGTATGTGTGTTTATTTTTGTTTTG TGTGCGTTGTGTGTAATATCTGTGACCTTTCCTCATCCGACTCCCGCCAA CTCCACAACCCGCGCTATCACGCCGCCCACCCCAAAATTATTTACAAAAC TCCCTGTTTGGGATATGCATAATCCTTCTCCAAAAAGCCTCTCGCAAAAT CTGGTAAAGCTTAATTTCGTGCTGATGCAATCTTGATGGTATGAAGGTTA CACTAACCGGTATGGCGCGTTCATTGTAGGGCCTACCTTGTCATAAGATC GAGGGTCAACGAGCTGCAAGTACAGTCAAGTCAAAATATCTTCCACACCC CCCCTCCCGTCGAAATCGATTAGGGTGGACCAGTTCAAGAAGGCATTGGC GGAAACCAGGAAACGGCCAAACCCGTATTTCGGCTACGCTGTTGCGCTAC CGCTTGATCTACCACCGGACACTCTGGCGGGCTACTTCGCTGATTCCTAC TTTTGATCGATTGATAAGCCTTGGTAGTTGCTGCTTTTGAGCTTATACAG CAGGACGGAGACTCGTGAGTTCGCGGGAGCCTTTCCACTCGAATACATGC CGTGATTATGATTATCATTGTGAAGGTTCACACCTCATGCAGATTGAGGG GTGGAAAGGAGGTTGAGCTGTCAGGCGTGTCCTTATCCTTTTGTAAGTTG ACTCGTTTATGGTCTTAAAACGCTGATTACGGCACACAAAATCAGACGTC CCTAACCAGCAAGGTCTCATTAACAAAAAAAAACTGACGAAAGCGATTTT TGACAGCTTCGAGTATTTTGAGTGTGGGGGAGATGCCCAGCTACCTCGTG TGGCGGTATGCTAAGTGAGGCTGACGACGCCATCCAAATACTGTACTGTA ATTTAGATTAGCGTGATAGAGTACACGCAGGAAATTTGTACAGAAAATCC GCAATTGTTTTTTGGCGCAACTGTAGTACAGTACAGTACAGTACAGTATG TGCAGTCAAGCAGGAATGAAGCGATGCAGTCGATTGACGCATGTTTTTTC TTGAATAGAAGGCGGTATCAGATACAGATACAGATACTGTGCTGTTTTTT ACACGAAAGCCGGAAATGTGTTGGTCGAGTTGGGGCGTTTGGGGGGCTAA GAGAAAAAGCACATTACGCTATCCGGCAGAAGAGAATATTTGCGTTGCTG ATGATGTGTCGCATGAGGCGAGGGCGTGTCTTCGGTCGTGTTGGTGTTGG TTGATTGGCATCAGGTGTACTGTAGTACCGGGTGTGGCGAGTGTGGTAAC CAAGGGGGCTCTTTACTTTTTACAAGTGAACTGAGAGCCACATTTCGATG TTATTCTTCACTTTGCGCCAAGTCTGAGACAATTGCCTATATTGTTCAAG TCACGACGAGGTTTACACGGTCGCCGCTTCGTCCGACGGGCTACACACTA CACGCTACGCTTATATGGCATGGGCTCCACCAGTTTTAGCCCGCGGCATC GACTGTGTGTGGCTGGGGTTGTGTCGATCTACTCATCATGTCGTGGAGGA CTGACTACCCCAAAAATACTGTATATATAGCGAGAGATAATGGGACTTCC TCACCTGGTACCAAGTTGGCAGCATGTGACGGCCTTTGCCTCATCGATAC AAAATTTGGTTATATTCCAAGTGAAACTAGGTTTGTGCAGTTCGCTGTCT TTGATGTGATTCACCTCTTCGACCGTGCTTGCAGCCTGTCGCCCGCTCGT AGGTAAATACCATTGCACACTGGACACGATCAGGTCAACACGCGAGTTGC GAAAAGTTACCGATTTCTTGTGCGTGCAGAGAGCTACTTGCTACTTGGTG CCACGTACTAATAAAATAAGGTTTCCGT
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1045:105991..116468-

>mRNA_F-serratus_M_contig1045.458.1 ID=mRNA_F-serratus_M_contig1045.458.1|Name=mRNA_F-serratus_M_contig1045.458.1|organism=Fucus serratus male|type=CDS|length=1008bp|location=Sequence derived from alignment at F-serratus_M_contig1045:105991..116468- (Fucus serratus male)
ATGGACAGGTTCATGAGCGGGTTGGAAAAAATGATGAATGGGCAGCCCGA
GGAGGATGCTGGCGACAGCGTCGCGCAGGGGGCGGGAGATTCGAAGGACT
TGGATGGCTTCCGCAGCAGTTTGATCCAGCAGACCAGATGGACAGGTTCA
TGAGCGGGTTGGAAAAAATGATGAATGGGCAGCCCGAGGAGGATGCTGGC
GACAGCGTCGCGCAGGGGGCGGGAGATTCGAAGGACTTGGATGGCTTCCG
CAGCAGTTTGATCCAGCAGACCAGAAGGACAGAAAGCTTGAAGCAAGAAT
TCAGCGGTTACGACATGTTCGACCTGATCGTAGACAAGTTCGACGTGCCG
TACGACGTGCAGATCAACAAGACCGTCTTTGCGGGCAAGCCCGTACTGTG
TTTCAACGTCATGTGGAAAAGGACAGAAAGCTTGAAGCAAGAATTCAGCG
GTTACGACATGTTCGACCTGATCGTAGACAAGTTCGACGTGCCGTACGAC
GTGCAGATCAACAAGACCGTCTTTGCGGGCAAGCCCGTACTGTGTTTCAA
CGTCATGTGGAAATACCTCGGACAGAGCAGCTTCCACTTGGGGGAACAAG
AGTACTTGGAACACCTTCAGGCGCTTGCAGAACTCCTTCAGGAGTGGGAC
AGATACCTCGGACAGAGCAGCTTCCACTTGGGGGAACAAGAGTACTTGGA
ACACCTTCAGGCGCTTGCAGAACTCCTTCAGGAGTGGGACAGGGTGGACC
AGTTCAAGAAGGCATTGGCGGAAACCAGGAAACGGCCAAACCCGTATTTC
GGCTACGCTGTTGCGCTACCGCTTGATCTACCACCGGACACTCTGGCGGG
CTACTTCGCTGATTCCTACTTTTGAGGTGGACCAGTTCAAGAAGGCATTG
GCGGAAACCAGGAAACGGCCAAACCCGTATTTCGGCTACGCTGTTGCGCT
ACCGCTTGATCTACCACCGGACACTCTGGCGGGCTACTTCGCTGATTCCT
ACTTTTGA
back to top