mRNA_F-serratus_M_contig1044.452.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1044.452.1
Unique NamemRNA_F-serratus_M_contig1044.452.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1044.452.1 vs. uniprot
Match: A0A6H5K8T1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8T1_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 3.190e-22
Identity = 73/215 (33.95%), Postives = 103/215 (47.91%), Query Frame = 3 
Query:    3 MIGPLSDHRVLAALRYVASAMVVLSMEWPGAQWEGWLDCPNHPQARIYLTPPGQARIGGQLLDRGAYANSMMCDCRRDADGVLQLVHQHLGTVVDTRSFVPEVRGVKRRSSES*MLSRRSQLLAANGLQGGGSSRDTGH-----------------DPFCSATVPGIVEEEETLWITVLSVVELLLVTALIVSARA*-----RSTNRTSHTRPED 581
            + GPL   RV  A+RYVASAM+ LS EWPG  W GWLDC  HP   +Y+    +AR+G  LL   A  ++  CDC  +  GVL+L  + LG V+DT     E  G+    +E        + +  N ++        GH                   F +A V GIVE++ETLW + L V  +L+V +++ S  A      +  +   H  PED
Sbjct:  590 VFGPLDSERVWVAIRYVASAMINLSKEWPGVLWTGWLDCEKHPSQHLYMASSVEARVGDPLLPAAA-PDARRCDCLLEPGGVLRLAVEELGPVIDTGKDPFE--GLSDEDTED-----PEETVTCNCVR-----EAFGHWLPHAWRTAKWLFGLAVVLFTTAVVAGIVEDKETLWKSSLGVCCVLMVFSVVASVFAYCGDREQGQSGGQHGTPED 791
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1044.452.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K8T1_9PHAE3.190e-2233.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1044contigF-serratus_M_contig1044:235904..237405 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.8
Seed ortholog evalue1.1e-13
Seed eggNOG ortholog2880.D7FVX5
Preferred nameSLITRK2
Hectar predicted targeting categoryother localisation
GOsGO:0000902,GO:0000904,GO:0005575,GO:0005623,GO:0005886,GO:0007275,GO:0007399,GO:0007409,GO:0008150,GO:0009653,GO:0009987,GO:0016020,GO:0016021,GO:0016043,GO:0022008,GO:0030030,GO:0030154,GO:0030182,GO:0031175,GO:0031224,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0044087,GO:0044089,GO:0044425,GO:0044464,GO:0048468,GO:0048518,GO:0048522,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050803,GO:0050807,GO:0051094,GO:0051128,GO:0051130,GO:0051239,GO:0051240,GO:0051960,GO:0051962,GO:0051963,GO:0051965,GO:0061564,GO:0065007,GO:0065008,GO:0071840,GO:0071944,GO:0120036,GO:0120039,GO:2000026
EggNOG free text desc.positive regulation of synapse assembly
EggNOG OGs2CMPC@1,2QR6C@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size850
Cds size342
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1044.452.1prot_F-serratus_M_contig1044.452.1Fucus serratus malepolypeptideF-serratus_M_contig1044 235906..236899 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928859.5440168-UTR-F-serratus_M_contig1044:235903..2359051622928859.5440168-UTR-F-serratus_M_contig1044:235903..235905Fucus serratus maleUTRF-serratus_M_contig1044 235904..235905 +
1690962604.5489714-UTR-F-serratus_M_contig1044:235903..2359051690962604.5489714-UTR-F-serratus_M_contig1044:235903..235905Fucus serratus maleUTRF-serratus_M_contig1044 235904..235905 +
1622928859.611784-UTR-F-serratus_M_contig1044:236899..2374051622928859.611784-UTR-F-serratus_M_contig1044:236899..237405Fucus serratus maleUTRF-serratus_M_contig1044 236900..237405 +
1690962604.5907662-UTR-F-serratus_M_contig1044:236899..2374051690962604.5907662-UTR-F-serratus_M_contig1044:236899..237405Fucus serratus maleUTRF-serratus_M_contig1044 236900..237405 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928859.5589862-CDS-F-serratus_M_contig1044:235905..2360671622928859.5589862-CDS-F-serratus_M_contig1044:235905..236067Fucus serratus maleCDSF-serratus_M_contig1044 235906..236067 +
1690962604.560696-CDS-F-serratus_M_contig1044:235905..2360671690962604.560696-CDS-F-serratus_M_contig1044:235905..236067Fucus serratus maleCDSF-serratus_M_contig1044 235906..236067 +
1622928859.5779514-CDS-F-serratus_M_contig1044:236384..2365121622928859.5779514-CDS-F-serratus_M_contig1044:236384..236512Fucus serratus maleCDSF-serratus_M_contig1044 236385..236512 +
1690962604.5706406-CDS-F-serratus_M_contig1044:236384..2365121690962604.5706406-CDS-F-serratus_M_contig1044:236384..236512Fucus serratus maleCDSF-serratus_M_contig1044 236385..236512 +
1622928859.5959997-CDS-F-serratus_M_contig1044:236847..2368991622928859.5959997-CDS-F-serratus_M_contig1044:236847..236899Fucus serratus maleCDSF-serratus_M_contig1044 236848..236899 +
1690962604.579043-CDS-F-serratus_M_contig1044:236847..2368991690962604.579043-CDS-F-serratus_M_contig1044:236847..236899Fucus serratus maleCDSF-serratus_M_contig1044 236848..236899 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1044.452.1

>prot_F-serratus_M_contig1044.452.1 ID=prot_F-serratus_M_contig1044.452.1|Name=mRNA_F-serratus_M_contig1044.452.1|organism=Fucus serratus male|type=polypeptide|length=114bp
MIGPLSDHRVLAALRYVASAMVVLSMEWPGAQWEGWLDCPNHPQARIYLT
PPGQARIGGQLLDRGAYANSMMCDCRRDADGVLQLVHQHLGTVVDTRSFV
PEVRGVKRRSSES*
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mRNA from alignment at F-serratus_M_contig1044:235904..237405+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1044.452.1 ID=mRNA_F-serratus_M_contig1044.452.1|Name=mRNA_F-serratus_M_contig1044.452.1|organism=Fucus serratus male|type=mRNA|length=1502bp|location=Sequence derived from alignment at F-serratus_M_contig1044:235904..237405+ (Fucus serratus male)
GGATGATTGGCCCACTCTCAGACCACCGGGTGCTGGCCGCACTGCGTTAC
GTGGCATCGGCGATGGTTGTTCTTTCGATGGAATGGCCCGGAGCTCAATG
GGAAGGCTGGCTGGATTGTCCGAACCATCCACAAGCCCGCATATACTTGA
CGCCACCAGGCCAGGTATGATCTCACTCTAGTGGAAGGCAACCCAAATGT
CTGTTTTAATGTGCTGACATTCCACCTTTGCTTTGATTCTCTTATAGGTA
TTTCTTATGTTGAGTAAGCCGCTCTTTGTCTCTTGACGTTGTCGCAGGGA
TACTCTCTATAGAGACATGCACCTACTTTCTAGACTAGTTAACTAGGTCG
GAATGTGATATAATGTTTTATACGTTTGGATCAAACATGCAAGAATTAGT
GGCCAGAACAAATTTTCTAGACTGGTTATTATTGAATTGGTGGAAATGTG
ATGTGATACTACATACGTTTGGATCAAACAGGCAAGAATCGGTGGCCAGC
TGCTGGATCGGGGAGCGTATGCGAACAGCATGATGTGTGACTGTCGACGA
GATGCTGATGGAGTGCTTCAGCTGGTTCACCAACATCTTGGCACGGTAGT
CGACACAAGGCGCGGATGTTGACACTATTAGTATTTATTTGTGGCATATT
TTTTGCCATATTACGGTACATCGCCCCTAGATATAAGGGTATTACATGGT
TCCTTTGTAGTTGAAAAGGAACATTCAGCTTGAGACGTTTTATAAATTGA
TGTAGGATCGTGCTCGCTTTTTATTCTTGAGAAAGGATTCACACCACTTC
TTTACAATACCGGGTACCACTGTGGATAAATATTGCTTTTTTCCCCGTTC
ATCTAAGCGAAACGTATGCAAAGTACTATCGATTACATAGCACGATGGTG
TACCATGTACAAACTAATTGGTGTACTCAAACTCTTCTTTACAGGTCATT
TGTTCCAGAGGTTCGAGGAGTAAAACGTCGCTCCAGTGAATCTTGAATGC
TGTCGCGAAGGTCTCAACTTTTGGCGGCCAATGGCCTGCAGGGTGGCGGA
AGCTCTCGGGACACTGGTCATGACCCCTTCTGTTCAGCAACCGTCCCGGG
CATCGTCGAAGAGGAGGAAACCCTTTGGATTACCGTCTTGTCAGTTGTGG
AGCTTTTGTTGGTGACAGCTTTGATAGTATCGGCTCGCGCCTAACGTAGC
ACGAACCGGACTTCGCACACTCGTCCTGAAGATGATAAAGTTTAGCCTGG
CGCACTTGCCTGAGATTGTGGATAAAATCCTCCGTTGTGTGCCATCGAAG
AGATGATTGAATCTAAAGACAGGGCCCACATCCTTTTGCTAGCAATCGGA
ATGCTGGTCTTGGCAAGATGTCGTACCGCATTTGAATTACGCGGCGCTCC
AAGTTTAAAGACGGCATGCGTCAGGGTGGGGACGTCTTCTCAAGTATTTT
TGGTGTGATTTTGCATAATTACTAAGGTTGGAAGCAGGAATATATTTTAC
AC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1044:235904..237405+

>mRNA_F-serratus_M_contig1044.452.1 ID=mRNA_F-serratus_M_contig1044.452.1|Name=mRNA_F-serratus_M_contig1044.452.1|organism=Fucus serratus male|type=CDS|length=684bp|location=Sequence derived from alignment at F-serratus_M_contig1044:235904..237405+ (Fucus serratus male)
ATGATTGGCCCACTCTCAGACCACCGGGTGCTGGCCGCACTGCGTTACGT
GGCATCGGCGATGGTTGTTCTTTCGATGGAATGGCCCGGAGCTCAATGGG
AAGGCTGGCTGGATTGTCCGAACCATCCACAAGCCCGCATATACTTGACG
CCACCAGGCCAGATGATTGGCCCACTCTCAGACCACCGGGTGCTGGCCGC
ACTGCGTTACGTGGCATCGGCGATGGTTGTTCTTTCGATGGAATGGCCCG
GAGCTCAATGGGAAGGCTGGCTGGATTGTCCGAACCATCCACAAGCCCGC
ATATACTTGACGCCACCAGGCCAGGCAAGAATCGGTGGCCAGCTGCTGGA
TCGGGGAGCGTATGCGAACAGCATGATGTGTGACTGTCGACGAGATGCTG
ATGGAGTGCTTCAGCTGGTTCACCAACATCTTGGCACGGTAGTCGACACA
AGGCAAGAATCGGTGGCCAGCTGCTGGATCGGGGAGCGTATGCGAACAGC
ATGATGTGTGACTGTCGACGAGATGCTGATGGAGTGCTTCAGCTGGTTCA
CCAACATCTTGGCACGGTAGTCGACACAAGGTCATTTGTTCCAGAGGTTC
GAGGAGTAAAACGTCGCTCCAGTGAATCTTGAGTCATTTGTTCCAGAGGT
TCGAGGAGTAAAACGTCGCTCCAGTGAATCTTGA
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