mRNA_F-serratus_M_contig1044.450.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1044.450.1
Unique NamemRNA_F-serratus_M_contig1044.450.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1044.450.1 vs. uniprot
Match: UPI001E43DD08 (hypothetical protein n=2 Tax=Roseiconus lacunae TaxID=2605694 RepID=UPI001E43DD08)

HSP 1 Score: 100 bits (249), Expect = 1.100e-23
Identity = 56/133 (42.11%), Postives = 81/133 (60.90%), Query Frame = 1
Query:    1 IYADNFFDLFLNGELVSSDT-RFLPHTAFQPTLKLLPGDNI-LAVYLRDNADNSTGLEYGDRCVGDGGFRFRALDDSLVSNSEWKCRTVFYGPINPE----HVTRAA----WMYIDYDDSHWDQAIEFPEVTV 369
            +YADN+F+L++NGEL + D+ RF+PH     ++ + P   + +AV  +DNAD  T LEY    +GDGGF  + + D  V+   WK ++VF+GPIN +     V R+     WM +D+DDS W  A EF E TV
Sbjct:   55 VYADNWFELYINGELTAVDSIRFMPHNVV--SVDVFPKYPMTIAVMAKDNADAKTALEYNHTQIGDGGFILK-MGDGTVTGKHWKAKSVFHGPINRDMRNPQVRRSDIPENWMTVDFDDSEWSAACEFSEQTV 184          
BLAST of mRNA_F-serratus_M_contig1044.450.1 vs. uniprot
Match: A0A5C6AVH0_9BACT (Uncharacterized protein n=1 Tax=Rhodopirellula pilleata TaxID=2714738 RepID=A0A5C6AVH0_9BACT)

HSP 1 Score: 99.4 bits (246), Expect = 3.410e-23
Identity = 56/135 (41.48%), Postives = 83/135 (61.48%), Query Frame = 1
Query:    1 IYADNFFDLFLNGELVSSDT-RFLPHTAFQPTLKLLPGDNI-LAVYLRDNADNSTGLEYGDRCVGDGGFRFRALDDSLVSNSEWKCRTVFYGPI-----NPEHVTRAA----WMYIDYDDSHWDQAIEFPEVTVG 372
            +YADN+F L++NGEL++ D+ RF+PH     ++ + P   + +AV  +DNAD  T +EY +  +GDGGF  + + D  VS + WK +++F+GPI     NP+ V R      W  +D+DDS W  A EF E TVG
Sbjct:   59 VYADNWFSLYINGELIAVDSIRFMPHNVI--SVDVFPSYPMTIAVIAKDNADPITAMEYNNTQIGDGGFILK-MADGTVSGTHWKAKSIFHGPIDRDTRNPK-VRREEMPVNWTAVDFDDSDWQSAKEFDEQTVG 189          
BLAST of mRNA_F-serratus_M_contig1044.450.1 vs. uniprot
Match: A0A5B9QMI6_9BACT (Uncharacterized protein n=1 Tax=Roseimaritima ulvae TaxID=980254 RepID=A0A5B9QMI6_9BACT)

HSP 1 Score: 98.2 bits (243), Expect = 9.120e-23
Identity = 55/133 (41.35%), Postives = 80/133 (60.15%), Query Frame = 1
Query:    1 IYADNFFDLFLNGELVSSDT-RFLPHTAFQPTLKLLPGDNI-LAVYLRDNADNSTGLEYGDRCVGDGGFRFRALDDSLVSNSEWKCRTVFYGPI-----NPEHVTRAA---WMYIDYDDSHWDQAIEFPEVTV 369
            +YADN+F L++NG+LV+ D+ RF+PH     ++ + P   + +AV  +DNAD  T +EY +  +GDGGF  + + D  V+   WK  +VF+GPI     NP  + R     WM +D+DDS W  A EF E TV
Sbjct:   57 VYADNWFSLYINGQLVAVDSIRFMPHNVI--SVDVFPKYPMTIAVIAKDNADAKTAMEYNNTQIGDGGFILK-MGDGTVTGKHWKALSVFHGPIDRDTKNPRVIHREIPENWMAVDFDDSDWQAAKEFDEKTV 186          
BLAST of mRNA_F-serratus_M_contig1044.450.1 vs. uniprot
Match: A0A517NXY6_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium K23_9 TaxID=1930275 RepID=A0A517NXY6_9BACT)

HSP 1 Score: 98.2 bits (243), Expect = 9.120e-23
Identity = 57/133 (42.86%), Postives = 79/133 (59.40%), Query Frame = 1
Query:    1 IYADNFFDLFLNGELVSSDT-RFLPHTAFQPTLKLLPGDNI-LAVYLRDNADNSTGLEYGDRCVGDGGFRFRALDDSLVSNSEWKCRTVFYGPI-----NPE---HVTRAAWMYIDYDDSHWDQAIEFPEVTV 369
            +YADN+F L++NGELV+ D+ RF+PH     ++ + P   + +AV  +DNAD  TG+EY +  +GDGGF  + L D  VS   W+ ++V  GPI     NP     V    W  +D+DDS WD A EF E TV
Sbjct:   57 VYADNWFSLWINGELVAVDSIRFMPHNVI--SVDVFPEYPMTIAVMAKDNADAKTGMEYNNTQIGDGGFILK-LADGTVSGKHWRAKSVSRGPIDRDTRNPRVENDVVPEGWFEVDFDDSSWDAAKEFSEQTV 186          
BLAST of mRNA_F-serratus_M_contig1044.450.1 vs. uniprot
Match: Q7UEA9_RHOBA (Uncharacterized protein n=1 Tax=Rhodopirellula baltica (strain DSM 10527 / NCIMB 13988 / SH1) TaxID=243090 RepID=Q7UEA9_RHOBA)

HSP 1 Score: 98.2 bits (243), Expect = 9.310e-23
Identity = 55/135 (40.74%), Postives = 82/135 (60.74%), Query Frame = 1
Query:    1 IYADNFFDLFLNGELVSSDT-RFLPHTAFQPTLKLLPGDNI-LAVYLRDNADNSTGLEYGDRCVGDGGFRFRALDDSLVSNSEWKCRTVFYGPI-----NPEHVTRAA----WMYIDYDDSHWDQAIEFPEVTVG 372
            +YADN+F L++NGEL++ D+ RF+PH     ++ + P   + +AV  +DNAD  T +EY +  +GDGGF  +  D ++  N  WK +++F+GPI     NP+ V R      W  +D+DDS W  A EF E TVG
Sbjct:   58 VYADNWFSLYINGELIAVDSIRFMPHNVI--SVDVFPSYPMTIAVIAKDNADPITAMEYNNTQIGDGGFILKMADGTVTGN-HWKAKSIFHGPIDRDTRNPK-VRREEMPENWTAVDFDDSDWQSAKEFDEQTVG 188          
BLAST of mRNA_F-serratus_M_contig1044.450.1 vs. uniprot
Match: A0A518J282_9BACT (Uncharacterized protein n=4 Tax=Rosistilla TaxID=2795779 RepID=A0A518J282_9BACT)

HSP 1 Score: 95.9 bits (237), Expect = 7.080e-22
Identity = 57/133 (42.86%), Postives = 78/133 (58.65%), Query Frame = 1
Query:    1 IYADNFFDLFLNGELVSSDT-RFLPHTAFQPTLKLLPGDNI-LAVYLRDNADNSTGLEYGDRCVGDGGFRFRALDDSLVSNSEWKCRTVFYGPI-----NPEHVTRAA---WMYIDYDDSHWDQAIEFPEVTV 369
            +YADN+F L++NGELV+ D+ RF+PH     ++ + P   + LAV  +DNAD  TG+EY +  +GDGGF  + L D  V+   WK ++V YGPI     NP  V       W  ID+DDS W  A  + E TV
Sbjct:   57 VYADNWFSLYINGELVAVDSIRFMPHNVI--SVDVFPKYPMTLAVIAKDNADAKTGMEYNNTQIGDGGFILK-LADGTVTGPHWKAKSVSYGPIDRDTRNPRVVHEELPENWFAIDFDDSSWQAAKVYDEQTV 186          
BLAST of mRNA_F-serratus_M_contig1044.450.1 vs. uniprot
Match: A0A1C3EP84_9PLAN (Uncharacterized protein n=2 Tax=Planctopirus hydrillae TaxID=1841610 RepID=A0A1C3EP84_9PLAN)

HSP 1 Score: 94.7 bits (234), Expect = 1.480e-21
Identity = 53/133 (39.85%), Postives = 79/133 (59.40%), Query Frame = 1
Query:    1 IYADNFFDLFLNGELVSSDT-RFLPHTAFQPTLKLLPGDNI-LAVYLRDNADNSTGLEYGDRCVGDGGFRFRALDDSLVSNSEWKCRTVFYGPINPEHVTRAA--------WMYIDYDDSHWDQAIEFPEVTV 369
            +YADN+F L++NGELV+ D+ +F+PH     ++ +LP   + +AV  RDNAD  TG+EY +  +GD GF  +   D  V+N +WK +   +GPIN +              W  I++DDS+WD A E+PE  V
Sbjct:   32 VYADNWFMLYINGELVAVDSIKFIPHNVV--SVDILPSYPMTIAVMARDNADPKTGMEYANTNIGDAGFVLK-FGDGTVTNGKWKAKRYSWGPINRDTRNPRVENLPIPEDWYAINFDDSNWDLAKEYPEDVV 161          
BLAST of mRNA_F-serratus_M_contig1044.450.1 vs. uniprot
Match: A0A4P5XZ77_9BACT (Uncharacterized protein n=1 Tax=Planctomycetia bacterium TaxID=2052181 RepID=A0A4P5XZ77_9BACT)

HSP 1 Score: 94.0 bits (232), Expect = 4.380e-21
Identity = 53/134 (39.55%), Postives = 78/134 (58.21%), Query Frame = 1
Query:    1 IYADNFFDLFLNGELVSSDT-RFLPHTAFQPTLKLLPGDNI-LAVYLRDNADNSTGLEYGDRCVGDGGFRFRALDDSLVSNSEWKCRTVFYGPINPEHVTRAA--------WMYIDYDDSHWDQAIEFPEVTVG 372
            IYADN+F L++NGELV+ D+ +F+PH     ++ +LP   + +AV  +DNAD  TG+EY +  +GDGGF  +   D  V+N+ WK +    GPIN +              W  +D+DDS W +A E+ E  VG
Sbjct:   52 IYADNWFMLYINGELVAVDSIKFIPHNVI--SVDILPTYPMTIAVMAKDNADPKTGMEYANTNIGDGGFILK-FGDGTVTNANWKAKAFSTGPINRDTKNPRVENIPIPENWYAVDFDDSSWGKAKEYTEEQVG 182          
BLAST of mRNA_F-serratus_M_contig1044.450.1 vs. uniprot
Match: A0A518DE21_9BACT (Uncharacterized protein n=1 Tax=Pirellulimonas nuda TaxID=2528009 RepID=A0A518DE21_9BACT)

HSP 1 Score: 93.6 bits (231), Expect = 6.280e-21
Identity = 54/133 (40.60%), Postives = 77/133 (57.89%), Query Frame = 1
Query:    1 IYADNFFDLFLNGELVSSDT-RFLPHTAFQPTLKLLPGDNI-LAVYLRDNADNSTGLEYGDRCVGDGGFRFRALDDSLVSNSEWKCRTVFYGPI-----NPEHVTRAA---WMYIDYDDSHWDQAIEFPEVTV 369
            +YADN+F L++NGELV+ D+ RF+PH     ++ +LP   + +AV  RDNAD  TG+EY +  +GD GF  +   D  VSN+ WK +   +GP+     NP   + A    W  + +DDS W  A EF E  V
Sbjct:   46 VYADNWFKLYINGELVAVDSIRFIPHNVV--SVDILPAYPMTIAVMARDNADPETGMEYANTSIGDAGFILK-FGDGTVSNAAWKAKKFSWGPVGADTKNPRVESIAVPKDWYAVGFDDSQWPNAREFTEAQV 175          
BLAST of mRNA_F-serratus_M_contig1044.450.1 vs. uniprot
Match: UPI001BB51F0F (Sulfatase-like hydrolase/transferase n=1 Tax=Akkermansiaceae bacterium TaxID=2562705 RepID=UPI001BB51F0F)

HSP 1 Score: 95.9 bits (237), Expect = 1.530e-20
Identity = 56/133 (42.11%), Postives = 77/133 (57.89%), Query Frame = 1
Query:    1 IYADNFFDLFLNGELVSSDT-RFLPHTAFQPTLKLLPGDNI-LAVYLRDNADNSTGLEYGDRCVGDGGFRFRALDDSLVSNSEWKCRTVFYGPINPEHVT---RAA-----WMYIDYDDSHWDQAIEFPEVTV 369
            IYADN+F L++NG+LV++D   F+PH     TL +LP   + +AV  RDNAD  TG+EY +  +GDGGF  +   D  V+ + WK +  F+GPIN +      RA      W   D+DDS W  A EF E  +
Sbjct:   44 IYADNWFALYINGQLVATDPIPFIPHNVV--TLDILPEYPMTIAVMARDNADPKTGMEYDNTSIGDGGFILK-FSDGTVTTASWKAKDFFHGPINSDTANPKVRATPIPENWFATDFDDSSWANAKEFTEQEI 173          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1044.450.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001E43DD081.100e-2342.11hypothetical protein n=2 Tax=Roseiconus lacunae Ta... [more]
A0A5C6AVH0_9BACT3.410e-2341.48Uncharacterized protein n=1 Tax=Rhodopirellula pil... [more]
A0A5B9QMI6_9BACT9.120e-2341.35Uncharacterized protein n=1 Tax=Roseimaritima ulva... [more]
A0A517NXY6_9BACT9.120e-2342.86Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
Q7UEA9_RHOBA9.310e-2340.74Uncharacterized protein n=1 Tax=Rhodopirellula bal... [more]
A0A518J282_9BACT7.080e-2242.86Uncharacterized protein n=4 Tax=Rosistilla TaxID=2... [more]
A0A1C3EP84_9PLAN1.480e-2139.85Uncharacterized protein n=2 Tax=Planctopirus hydri... [more]
A0A4P5XZ77_9BACT4.380e-2139.55Uncharacterized protein n=1 Tax=Planctomycetia bac... [more]
A0A518DE21_9BACT6.280e-2140.60Uncharacterized protein n=1 Tax=Pirellulimonas nud... [more]
UPI001BB51F0F1.530e-2042.11Sulfatase-like hydrolase/transferase n=1 Tax=Akker... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1044contigF-serratus_M_contig1044:103874..104691 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score101.7
Seed ortholog evalue2.6e-19
Seed eggNOG ortholog243090.RB11468
Hectar predicted targeting categoryother localisation
EggNOG OGs2DB7P@1,2Z7MR@2
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons2
Model size372
Cds size372
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928859.450536-CDS-F-serratus_M_contig1044:103873..1041601622928859.450536-CDS-F-serratus_M_contig1044:103873..104160Fucus serratus maleCDSF-serratus_M_contig1044 103874..104160 +
1690962604.5198658-CDS-F-serratus_M_contig1044:103873..1041601690962604.5198658-CDS-F-serratus_M_contig1044:103873..104160Fucus serratus maleCDSF-serratus_M_contig1044 103874..104160 +
1622928859.4783273-CDS-F-serratus_M_contig1044:104606..1046911622928859.4783273-CDS-F-serratus_M_contig1044:104606..104691Fucus serratus maleCDSF-serratus_M_contig1044 104607..104691 +
1690962604.536618-CDS-F-serratus_M_contig1044:104606..1046911690962604.536618-CDS-F-serratus_M_contig1044:104606..104691Fucus serratus maleCDSF-serratus_M_contig1044 104607..104691 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1044.450.1prot_F-serratus_M_contig1044.450.1Fucus serratus malepolypeptideF-serratus_M_contig1044 103874..104691 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1044.450.1

>prot_F-serratus_M_contig1044.450.1 ID=prot_F-serratus_M_contig1044.450.1|Name=mRNA_F-serratus_M_contig1044.450.1|organism=Fucus serratus male|type=polypeptide|length=124bp
IYADNFFDLFLNGELVSSDTRFLPHTAFQPTLKLLPGDNILAVYLRDNAD
NSTGLEYGDRCVGDGGFRFRALDDSLVSNSEWKCRTVFYGPINPEHVTRA
AWMYIDYDDSHWDQAIEFPEVTVG
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mRNA from alignment at F-serratus_M_contig1044:103874..104691+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1044.450.1 ID=mRNA_F-serratus_M_contig1044.450.1|Name=mRNA_F-serratus_M_contig1044.450.1|organism=Fucus serratus male|type=mRNA|length=818bp|location=Sequence derived from alignment at F-serratus_M_contig1044:103874..104691+ (Fucus serratus male)
ATTTACGCGGACAATTTCTTCGATCTCTTCCTCAATGGCGAGCTTGTCTC TAGCGACACTCGCTTTTTGCCTCACACGGCATTTCAGCCGACGCTAAAAC TCCTCCCAGGGGACAACATCCTGGCCGTGTATCTCAGAGACAACGCAGAT AATAGCACGGGCCTCGAATATGGTGATCGCTGCGTGGGAGACGGCGGCTT TCGCTTCCGTGCTCTCGACGACTCTCTCGTCTCAAATAGCGAGTGGAAGT GTCGCACCGTGTTCTATGGCCCCATCAATCCGGAGCAGTGCTACGGCCTA GGACTAGACACAACAGGATACTCAGCGTTCGGTGATGATGGCCTGGAGAA GACGCTGGCACTGGTCCGCTCAGTCAATCCAATCGAGGCCTGCAGAGACA CGCGGGTGAGGGCTGTGTGGTAAAATAACATTCCGCCAACTGGGGACTTG AGAGATCGCACGACAGGTTTTTGTTTGACTGCTCCTAGGAACCTCAAGGA GGAGCAGGAAAGAGCACGCATCGTGAAGCTAACGAGACGTTGAACGGAGC TTGGCCGTGTCCCTGAATAAAAAAATCGGTTTCTGCAGTAAAATGTTTTT GCGGTGTCGTGGTGTTGTCCGCCGTCTGGCAGGATCCGGTAACAAGCGAT CAAGACGGTTACTCGTACGAAACTTGTGAGACGATCGTCTTCCCCTGGTT CGGCCAAGAGACAGAGTTTAAGCCCAACGGTAGCGTCACACGTGCTGCCT GGATGTACATCGACTACGATGACAGCCACTGGGACCAGGCCATAGAGTTC CCTGAAGTCACAGTTGGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1044:103874..104691+

>mRNA_F-serratus_M_contig1044.450.1 ID=mRNA_F-serratus_M_contig1044.450.1|Name=mRNA_F-serratus_M_contig1044.450.1|organism=Fucus serratus male|type=CDS|length=744bp|location=Sequence derived from alignment at F-serratus_M_contig1044:103874..104691+ (Fucus serratus male)
ATTTACGCGGACAATTTCTTCGATCTCTTCCTCAATGGCGAGCTTGTCTC
TAGCGACACTCGCTTTTTGCCTCACACGGCATTTCAGCCGACGCTAAAAC
TCCTCCCAGGGGACAACATCCTGGCCGTGTATCTCAGAGACAACGCAGAT
AATAGCACGGGCCTCGAATATGGTGATCGCTGCGTGGGAGACGGCGGCTT
TCGCTTCCGTGCTCTCGACGACTCTCTCGTCTCAAATAGCGAGTGGAAGT
GTCGCACCGTGTTCTATGGCCCCATCAATCCGGAGCAATTTACGCGGACA
ATTTCTTCGATCTCTTCCTCAATGGCGAGCTTGTCTCTAGCGACACTCGC
TTTTTGCCTCACACGGCATTTCAGCCGACGCTAAAACTCCTCCCAGGGGA
CAACATCCTGGCCGTGTATCTCAGAGACAACGCAGATAATAGCACGGGCC
TCGAATATGGTGATCGCTGCGTGGGAGACGGCGGCTTTCGCTTCCGTGCT
CTCGACGACTCTCTCGTCTCAAATAGCGAGTGGAAGTGTCGCACCGTGTT
CTATGGCCCCATCAATCCGGAGCACGTCACACGTGCTGCCTGGATGTACA
TCGACTACGATGACAGCCACTGGGACCAGGCCATAGAGTTCCCTGAAGTC
ACAGTTGGGCGTCACACGTGCTGCCTGGATGTACATCGACTACGATGACA
GCCACTGGGACCAGGCCATAGAGTTCCCTGAAGTCACAGTTGGG
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