mRNA_F-serratus_M_contig1042.441.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1042.441.1
Unique NamemRNA_F-serratus_M_contig1042.441.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1042.441.1 vs. uniprot
Match: A0A7S1TXY0_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TXY0_9STRA)

HSP 1 Score: 103 bits (257), Expect = 1.240e-22
Identity = 57/156 (36.54%), Postives = 72/156 (46.15%), Query Frame = 1
Query:   22 YCDIGNNNEACGWDGGDCCECTCVFSPEKDGSCERFSCFDPNSGCADDPGHLGYTNCTGVSFINDGRCDYTNNNEACDWDGKDCCECTCIDGYYYGCGVYGYACLDPNAECTDPRLLEYSNCSGAVNWIGDGFCD-PINNNEACDWDGGDCCECTC 486
            YCD   N +ACGWDGGDCCE TCV           ++C +P              +C   + + +G C+   N + C WDG DCC  TC              C      CTDP  ++  NC     +  DG+CD P +N  AC WDGGDCC  TC
Sbjct:  500 YCDPEMNTDACGWDGGDCCEQTCVSGSPFTCGVNGYNCVNPTG------------DCDFATALGNGVCNLEANIDECSWDGGDCCASTCNHA----------DCATATFTCTDPDAVDTLNCD-YEGYKNDGYCDHPTSNTFACSWDGGDCCPSTC 632          
BLAST of mRNA_F-serratus_M_contig1042.441.1 vs. uniprot
Match: D7FI82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI82_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 1.630e-22
Identity = 50/100 (50.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query:    1 VSSIGNSYCDIGNNNEACGWDGGDCCECTCVFSP---EKDGSCER-FSCFDPNSGCADDPGHLGYTNCTGVSFINDGRCDYTNNNEACDWDGKDCCECTC 288
            ++S+G+  CD  NNNE CG+DGGDCCECTCV S    E   SCE  F+C DPN+ C D    L   +    + I +G C+  NNN  C +DG DCCECTC
Sbjct:   13 IASVGDGICDEENNNELCGYDGGDCCECTCVPSVSAGEYSVSCEYGFACIDPNASCFDKDFTLDMADNCYHNSIGNGYCNCQNNNADCGYDGGDCCECTC 112          
BLAST of mRNA_F-serratus_M_contig1042.441.1 vs. uniprot
Match: D7FTI5_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTI5_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 7.920e-22
Identity = 64/167 (38.32%), Postives = 82/167 (49.10%), Query Frame = 1
Query:    1 VSSIGNSYCDIGNNNEACGWDGGDCCECTCVFSPEKDGSCERFSCFDPNSGCADDPGHLGYTNCTGVSFI----NDGRCDYTNNNEACDWDGKDCCECTCIDGYYYGCGVYGYACLDPNAECTDPRLL-EYSNCSGAVNWIGDGFCDPINNNEACDWDGGDCCECTC 486
            ++ IGN  CD   N  +CG+DGGDCC CTCV  P    S   F C  P+  C D+P        + + F     N  +C+   N   C+    DCCE  C   YY  C  Y + C D  + C    ++ E  +C+G    IGD FCD  NNN  C +DGGDCC  TC
Sbjct:   36 IADIGNGRCDAELNVPSCGYDGGDCCSCTCVDGPLYWCSEGTFDCLYPD--CGDNPA-------SDLEFFETQDNTTKCNMFQNYPECNTLWSDCCEMDCGGDYY--CDTYRFDCSD--STCLSQTVVAENPDCAGDWLTIGDEFCDSENNNPECAYDGGDCCADTC 189          
BLAST of mRNA_F-serratus_M_contig1042.441.1 vs. uniprot
Match: D7FV90_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV90_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 9.300e-21
Identity = 62/173 (35.84%), Postives = 89/173 (51.45%), Query Frame = 1
Query:    1 VSSIGNSYCDIGNNNEACGWDGGDCCECTCVFSPEKDGSC--ERFSCFDPNSGCADDPGHLGYTNCTGVS----FINDGRCDYTNNNEACDWDGKDCCECTCIDGYYYGCGVYGYACLDPNAECTDPRLLEYS-----NCSGAVNWIGDGFCDPINNNEACDWDGGDCCECTC 486
            ++++ +  CD  NN  +C +DGGDCC  TCV S    G C  +   C +P+   A D  +  Y NCT +S    +I+DG            +DG DCC  TC+           Y C + N+EC DP  +++      NC+G    +G+G C P NN   C++DGGDCCEC+C
Sbjct:   41 LATVEDGVCDSSNNIASCLYDGGDCCPSTCVSSA---GLCTEDTRQCLNPS---ASDYPYAEYGNCTAMSGHLPYISDG------------YDGGDCCPSTCV------VSTTDY-CPEDNSECVDPFAVDFGYPGFENCTGYPPSMGNGLCIPENNIPECEYDGGDCCECSC 188          
BLAST of mRNA_F-serratus_M_contig1042.441.1 vs. uniprot
Match: A0A6H5JTB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB5_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 3.010e-20
Identity = 64/168 (38.10%), Postives = 82/168 (48.81%), Query Frame = 1
Query:   25 CDIGNNNEACGWDGGDCCECTCVFSPEKDGSCERFSCFDPNSGCADDPGHLGYTNCTGVSFINDGRCDYTNNNEACDWDGKDCCECTCIDGYYYGCGV--------------YGYACLDPNAECTDPRLLEYSNCSGAVNWIGDGFCDPINNNEACDWDGGDCCECTC 486
            C+  NN E C +DGGDCCE TC+ S  K G    + C+DP+           YT      +++DG CD  NN E C +DG DCC  +C+D  Y  CGV                  CLDP  +   P    + N +  V  IG+G CD   NNE C +DGGDCC  +C
Sbjct:  112 CNYLNNYELCNYDGGDCCEETCIDSTYKCGI-SGYDCWDPDQERKTTEVSPDYTYLCNDIWLSDGHCDDDNNVEECSFDGGDCCVDSCVDAKYT-CGVTYRDQCDPQSSDCNLRLICLDPVYKTPAPTPTLF-NRTCPVEDIGNGRCDDEYNNEFCLFDGGDCCAPSC 276          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1042.441.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1TXY0_9STRA1.240e-2236.54Hypothetical protein n=3 Tax=Phaeomonas parva TaxI... [more]
D7FI82_ECTSI1.630e-2250.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTI5_ECTSI7.920e-2238.32Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
D7FV90_ECTSI9.300e-2135.84Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5JTB5_9PHAE3.010e-2038.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1042contigF-serratus_M_contig1042:230721..231206 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score163.3
Seed ortholog evalue9.4e-38
Seed eggNOG ortholog2880.D7G5Y7
Hectar predicted targeting categoryother localisation
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size486
Cds size486
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928857.993514-CDS-F-serratus_M_contig1042:230720..2312061622928857.993514-CDS-F-serratus_M_contig1042:230720..231206Fucus serratus maleCDSF-serratus_M_contig1042 230721..231206 -
1690962603.9077044-CDS-F-serratus_M_contig1042:230720..2312061690962603.9077044-CDS-F-serratus_M_contig1042:230720..231206Fucus serratus maleCDSF-serratus_M_contig1042 230721..231206 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1042.441.1prot_F-serratus_M_contig1042.441.1Fucus serratus malepolypeptideF-serratus_M_contig1042 230721..231206 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1042.441.1

>prot_F-serratus_M_contig1042.441.1 ID=prot_F-serratus_M_contig1042.441.1|Name=mRNA_F-serratus_M_contig1042.441.1|organism=Fucus serratus male|type=polypeptide|length=162bp
VSSIGNSYCDIGNNNEACGWDGGDCCECTCVFSPEKDGSCERFSCFDPNS
GCADDPGHLGYTNCTGVSFINDGRCDYTNNNEACDWDGKDCCECTCIDGY
YYGCGVYGYACLDPNAECTDPRLLEYSNCSGAVNWIGDGFCDPINNNEAC
DWDGGDCCECTC
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mRNA from alignment at F-serratus_M_contig1042:230721..231206-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1042.441.1 ID=mRNA_F-serratus_M_contig1042.441.1|Name=mRNA_F-serratus_M_contig1042.441.1|organism=Fucus serratus male|type=mRNA|length=486bp|location=Sequence derived from alignment at F-serratus_M_contig1042:230721..231206- (Fucus serratus male)
GTGTCATCCATCGGAAACAGCTATTGCGACATCGGCAACAATAACGAGGC TTGTGGCTGGGATGGAGGAGACTGTTGTGAATGTACGTGTGTCTTTAGCC CCGAAAAAGACGGCAGTTGTGAGCGTTTTTCGTGTTTTGACCCAAACTCA GGTTGTGCTGACGATCCAGGCCACCTCGGGTACACCAACTGCACTGGGGT GTCATTCATCAACGACGGTCGGTGTGACTACACAAACAACAACGAGGCTT GTGACTGGGACGGAAAAGATTGTTGTGAATGTACGTGCATAGACGGATAT TATTACGGTTGCGGTGTATATGGATATGCATGTCTTGACCCAAATGCGGA ATGTACTGATCCACGTCTCCTGGAGTACAGCAACTGCAGTGGGGCTGTCA ATTGGATTGGCGACGGGTTTTGCGACCCTATAAACAACAACGAGGCTTGT GACTGGGATGGAGGAGACTGTTGTGAGTGCACGTGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1042:230721..231206-

>mRNA_F-serratus_M_contig1042.441.1 ID=mRNA_F-serratus_M_contig1042.441.1|Name=mRNA_F-serratus_M_contig1042.441.1|organism=Fucus serratus male|type=CDS|length=972bp|location=Sequence derived from alignment at F-serratus_M_contig1042:230721..231206- (Fucus serratus male)
GTGTCATCCATCGGAAACAGCTATTGCGACATCGGCAACAATAACGAGGC
TTGTGGCTGGGATGGAGGAGACTGTTGTGAATGTACGTGTGTCTTTAGCC
CCGAAAAAGACGGCAGTTGTGAGCGTTTTTCGTGTTTTGACCCAAACTCA
GGTTGTGCTGACGATCCAGGCCACCTCGGGTACACCAACTGCACTGGGGT
GTCATTCATCAACGACGGTCGGTGTGACTACACAAACAACAACGAGGCTT
GTGACTGGGACGGAAAAGATTGTTGTGAATGTACGTGCATAGACGGATAT
TATTACGGTTGCGGTGTATATGGATATGCATGTCTTGACCCAAATGCGGA
ATGTACTGATCCACGTCTCCTGGAGTACAGCAACTGCAGTGGGGCTGTCA
ATTGGATTGGCGACGGGTTTTGCGACCCTATAAACAACAACGAGGCTTGT
GACTGGGATGGAGGAGACTGTTGTGAGTGCACGTGCGTGTCATCCATCGG
AAACAGCTATTGCGACATCGGCAACAATAACGAGGCTTGTGGCTGGGATG
GAGGAGACTGTTGTGAATGTACGTGTGTCTTTAGCCCCGAAAAAGACGGC
AGTTGTGAGCGTTTTTCGTGTTTTGACCCAAACTCAGGTTGTGCTGACGA
TCCAGGCCACCTCGGGTACACCAACTGCACTGGGGTGTCATTCATCAACG
ACGGTCGGTGTGACTACACAAACAACAACGAGGCTTGTGACTGGGACGGA
AAAGATTGTTGTGAATGTACGTGCATAGACGGATATTATTACGGTTGCGG
TGTATATGGATATGCATGTCTTGACCCAAATGCGGAATGTACTGATCCAC
GTCTCCTGGAGTACAGCAACTGCAGTGGGGCTGTCAATTGGATTGGCGAC
GGGTTTTGCGACCCTATAAACAACAACGAGGCTTGTGACTGGGATGGAGG
AGACTGTTGTGAGTGCACGTGC
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