mRNA_F-serratus_M_contig1042.441.1 (mRNA) Fucus serratus male
Overview
Homology
BLAST of mRNA_F-serratus_M_contig1042.441.1 vs. uniprot
Match: A0A7S1TXY0_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TXY0_9STRA) HSP 1 Score: 103 bits (257), Expect = 1.240e-22 Identity = 57/156 (36.54%), Postives = 72/156 (46.15%), Query Frame = 1 Query: 22 YCDIGNNNEACGWDGGDCCECTCVFSPEKDGSCERFSCFDPNSGCADDPGHLGYTNCTGVSFINDGRCDYTNNNEACDWDGKDCCECTCIDGYYYGCGVYGYACLDPNAECTDPRLLEYSNCSGAVNWIGDGFCD-PINNNEACDWDGGDCCECTC 486 YCD N +ACGWDGGDCCE TCV ++C +P +C + + +G C+ N + C WDG DCC TC C CTDP ++ NC + DG+CD P +N AC WDGGDCC TC Sbjct: 500 YCDPEMNTDACGWDGGDCCEQTCVSGSPFTCGVNGYNCVNPTG------------DCDFATALGNGVCNLEANIDECSWDGGDCCASTCNHA----------DCATATFTCTDPDAVDTLNCD-YEGYKNDGYCDHPTSNTFACSWDGGDCCPSTC 632
BLAST of mRNA_F-serratus_M_contig1042.441.1 vs. uniprot
Match: D7FI82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI82_ECTSI) HSP 1 Score: 95.5 bits (236), Expect = 1.630e-22 Identity = 50/100 (50.00%), Postives = 62/100 (62.00%), Query Frame = 1 Query: 1 VSSIGNSYCDIGNNNEACGWDGGDCCECTCVFSP---EKDGSCER-FSCFDPNSGCADDPGHLGYTNCTGVSFINDGRCDYTNNNEACDWDGKDCCECTC 288 ++S+G+ CD NNNE CG+DGGDCCECTCV S E SCE F+C DPN+ C D L + + I +G C+ NNN C +DG DCCECTC Sbjct: 13 IASVGDGICDEENNNELCGYDGGDCCECTCVPSVSAGEYSVSCEYGFACIDPNASCFDKDFTLDMADNCYHNSIGNGYCNCQNNNADCGYDGGDCCECTC 112
BLAST of mRNA_F-serratus_M_contig1042.441.1 vs. uniprot
Match: D7FTI5_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTI5_ECTSI) HSP 1 Score: 101 bits (251), Expect = 7.920e-22 Identity = 64/167 (38.32%), Postives = 82/167 (49.10%), Query Frame = 1 Query: 1 VSSIGNSYCDIGNNNEACGWDGGDCCECTCVFSPEKDGSCERFSCFDPNSGCADDPGHLGYTNCTGVSFI----NDGRCDYTNNNEACDWDGKDCCECTCIDGYYYGCGVYGYACLDPNAECTDPRLL-EYSNCSGAVNWIGDGFCDPINNNEACDWDGGDCCECTC 486 ++ IGN CD N +CG+DGGDCC CTCV P S F C P+ C D+P + + F N +C+ N C+ DCCE C YY C Y + C D + C ++ E +C+G IGD FCD NNN C +DGGDCC TC Sbjct: 36 IADIGNGRCDAELNVPSCGYDGGDCCSCTCVDGPLYWCSEGTFDCLYPD--CGDNPA-------SDLEFFETQDNTTKCNMFQNYPECNTLWSDCCEMDCGGDYY--CDTYRFDCSD--STCLSQTVVAENPDCAGDWLTIGDEFCDSENNNPECAYDGGDCCADTC 189
BLAST of mRNA_F-serratus_M_contig1042.441.1 vs. uniprot
Match: D7FV90_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV90_ECTSI) HSP 1 Score: 98.2 bits (243), Expect = 9.300e-21 Identity = 62/173 (35.84%), Postives = 89/173 (51.45%), Query Frame = 1 Query: 1 VSSIGNSYCDIGNNNEACGWDGGDCCECTCVFSPEKDGSC--ERFSCFDPNSGCADDPGHLGYTNCTGVS----FINDGRCDYTNNNEACDWDGKDCCECTCIDGYYYGCGVYGYACLDPNAECTDPRLLEYS-----NCSGAVNWIGDGFCDPINNNEACDWDGGDCCECTC 486 ++++ + CD NN +C +DGGDCC TCV S G C + C +P+ A D + Y NCT +S +I+DG +DG DCC TC+ Y C + N+EC DP +++ NC+G +G+G C P NN C++DGGDCCEC+C Sbjct: 41 LATVEDGVCDSSNNIASCLYDGGDCCPSTCVSSA---GLCTEDTRQCLNPS---ASDYPYAEYGNCTAMSGHLPYISDG------------YDGGDCCPSTCV------VSTTDY-CPEDNSECVDPFAVDFGYPGFENCTGYPPSMGNGLCIPENNIPECEYDGGDCCECSC 188
BLAST of mRNA_F-serratus_M_contig1042.441.1 vs. uniprot
Match: A0A6H5JTB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB5_9PHAE) HSP 1 Score: 95.5 bits (236), Expect = 3.010e-20 Identity = 64/168 (38.10%), Postives = 82/168 (48.81%), Query Frame = 1 Query: 25 CDIGNNNEACGWDGGDCCECTCVFSPEKDGSCERFSCFDPNSGCADDPGHLGYTNCTGVSFINDGRCDYTNNNEACDWDGKDCCECTCIDGYYYGCGV--------------YGYACLDPNAECTDPRLLEYSNCSGAVNWIGDGFCDPINNNEACDWDGGDCCECTC 486 C+ NN E C +DGGDCCE TC+ S K G + C+DP+ YT +++DG CD NN E C +DG DCC +C+D Y CGV CLDP + P + N + V IG+G CD NNE C +DGGDCC +C Sbjct: 112 CNYLNNYELCNYDGGDCCEETCIDSTYKCGI-SGYDCWDPDQERKTTEVSPDYTYLCNDIWLSDGHCDDDNNVEECSFDGGDCCVDSCVDAKYT-CGVTYRDQCDPQSSDCNLRLICLDPVYKTPAPTPTLF-NRTCPVEDIGNGRCDDEYNNEFCLFDGGDCCAPSC 276 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1042.441.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pages
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1042.441.1 >prot_F-serratus_M_contig1042.441.1 ID=prot_F-serratus_M_contig1042.441.1|Name=mRNA_F-serratus_M_contig1042.441.1|organism=Fucus serratus male|type=polypeptide|length=162bp VSSIGNSYCDIGNNNEACGWDGGDCCECTCVFSPEKDGSCERFSCFDPNSback to top mRNA from alignment at F-serratus_M_contig1042:230721..231206- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1042.441.1 ID=mRNA_F-serratus_M_contig1042.441.1|Name=mRNA_F-serratus_M_contig1042.441.1|organism=Fucus serratus male|type=mRNA|length=486bp|location=Sequence derived from alignment at F-serratus_M_contig1042:230721..231206- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1042:230721..231206- >mRNA_F-serratus_M_contig1042.441.1 ID=mRNA_F-serratus_M_contig1042.441.1|Name=mRNA_F-serratus_M_contig1042.441.1|organism=Fucus serratus male|type=CDS|length=972bp|location=Sequence derived from alignment at F-serratus_M_contig1042:230721..231206- (Fucus serratus male)back to top |