mRNA_F-serratus_M_contig1042.441.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1042.441.1
Unique NamemRNA_F-serratus_M_contig1042.441.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1042.441.1 vs. uniprot
Match: D7FSR3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSR3_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 1.160e-36
Identity = 72/167 (43.11%), Postives = 89/167 (53.29%), Query Frame = 1
Query:    7 SIGNSYCDIGNNNEACGWDGGDCCECTCVFSPEKDGSCERFSCFDPNSGCADDPGHLG--YTNCTGVSFINDGRCDYTNNNEACDWDGKDCCECTC---IDGYYYGCGVYGYACLDPNAECTDPRLLE--YSNCSGAVNWIGDGFCDPINNNEACDWDGGDCCECTC 486
            + G+ +C+  NNNE CG+DGGDCCECTCV     +  C  F+C DP + C DD         NC  + ++ DG CD  NN E CD+DG DCCECTC                 C+DP A C D  +    Y  C   V  +GD  C+  NN E CD+D GDCCE TC
Sbjct:   61 NFGDGFCNDYNNNEQCGYDGGDCCECTCVVDWSAEFGCTEFACIDPTAPCVDDDDVTADALENCM-MEYLGDGYCDTYNNIEICDYDGGDCCECTCGSDSTDVLDXXXXXXXXCIDPTASCFDENITVDMYEYCD--VELLGDSICNLSNNFEVCDYDFGDCCEATC 224          
BLAST of mRNA_F-serratus_M_contig1042.441.1 vs. uniprot
Match: D7G4F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F9_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 5.230e-35
Identity = 80/178 (44.94%), Postives = 102/178 (57.30%), Query Frame = 1
Query:   13 GNSYCDIGNNNEACGWDGGDCCECTCVFSPE---------KDGSCERFSCFDPNSGC-ADDPGHLGYTNCTGVSFINDGRCDYTNNNEACDWDGKDCCECTCI--------DGYYYGCGVYGYACLDPNAECT--DPRLLEYSNCSGAVNWIGDGFCDPINNNEACDWDGGDCCECTC 486
            G+ YC   NNN  CG+DGGDCCECTC  +P+         K+GS   F+C DP++ C A+D   +  +       + DG CD  NNNE C +DG DCCECTC         +  Y  CG  G+AC+DP+A C   D   ++      AV  +GDG+CD  NNN AC +DGGDCCECTC
Sbjct:   37 GDGYCTPPNNNAECGYDGGDCCECTCQ-NPQGGDHHWICSKNGS--GFACVDPDAPCYAEDGVTVEASQECDFWDLGDGWCDQVNNNELCGYDGGDCCECTCEVPTDDDWDNDLYVACGE-GFACIDPSAPCVNDDDITVDVDESCDAVG-MGDGYCDMDNNNAACAYDGGDCCECTC 209          
BLAST of mRNA_F-serratus_M_contig1042.441.1 vs. uniprot
Match: A0A6H5JXR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXR2_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 3.790e-33
Identity = 74/165 (44.85%), Postives = 94/165 (56.97%), Query Frame = 1
Query:   10 IGNSYCDIGNNNEACGWDGGDCCECTCV--FSPEKDGSCERFS-CFDPNSGCADDPGHLGYT--NCTGVSFINDGRCDYTNNNEACDWDGKDCCECTCI-----------DGYYYGCGVYGYACLDPNAECT--DPRLLEYSNCSGAVNWIGDGFCDPINNNEAC 450
            +G+ +CD  NNNE CG+DGGDCCECTCV  +  + D +C  ++ C DP++ C DD          C  V  + DG CD  NNNE C +DG DCCECTC            D +Y  CG  G+AC+DPNA C   D   ++      AVN +GDG+CD  NN EAC
Sbjct:   78 LGDGWCDQDNNNEICGYDGGDCCECTCVSPWDDDDDWACRNYNACIDPDAPCVDDDDITAVMVEECGWVRGVGDGWCDEDNNNELCGYDGGDCCECTCEAPPADDDWDWDDDWYGPCGS-GFACIDPNAPCVNDDDITVDVDESCDAVN-MGDGYCDISNNIEAC 240          
BLAST of mRNA_F-serratus_M_contig1042.441.1 vs. uniprot
Match: A0A6H5JTT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT4_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 2.990e-32
Identity = 76/175 (43.43%), Postives = 94/175 (53.71%), Query Frame = 1
Query:    1 VSSIGNSYCDIGNNNEACGWDGGDCCECTCVFSPEKDGSCERFSCFDPNSGCADDPGHLGYT--NCTGVSFINDGRCDYTNNNEACDWDGKDCCECTCI--------DGYYYGCGVYGYACLDPNAECT---DPRLLEYSNCSGAVNWIGDGFCDPINNNEACDWDGGDCCECTC 486
            +  + +  CD  NNNE CG+DGGDCC CTC+    + G    F+C DP++ CADD      T  NC GV  I DG+CD  NN E C +DG DCC CTC         DG         +AC+DP+A C    D  +     C G     GDG+CD  NNN+ C +D GDCC CTC
Sbjct:  181 IVHLADGDCDQINNNEECGYDGGDCCFCTCLDDFYECGI-RGFACIDPSAECADDDDVTVDTVENC-GVRSIGDGQCDLDNNREECHYDGGDCCSCTCQVPDDDSGDDGSLCSESTV-FACIDPDAPCVNDDDITVDMMDTCGGHPINFGDGWCDDDNNNKECGYDSGDCCSCTC 352          
BLAST of mRNA_F-serratus_M_contig1042.441.1 vs. uniprot
Match: A0A6H5J6K0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6K0_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 7.390e-31
Identity = 75/171 (43.86%), Postives = 85/171 (49.71%), Query Frame = 1
Query:    1 VSSIGNSYCDIGNNNEACGWDGGDCCECTCVFSPEKDGSCERFSCFDPNSGCADDPGHLGYTNCTGVSFINDGRCDYTNNNEACDWDGKDCC-----ECTCIDGYYYGCGV----YGYACLDPNAECTDPRLLEYSNCSGAVNWIGDGFCDPINNNEACDWDGGDCCECTC 486
            +  IG+  CD  NNNE CGWDGGDCC CTC  S     S     C DPN+ C   P    Y       F +DG CD   N E CDWDG DCC       TC+D  Y GC      YG +    +   T     + S C   V  + DG CD  NNN ACD+DGGDCCEC C
Sbjct:  227 IYMIGDGSCDYYNNNEECGWDGGDCCSCTCEGSYYYSCSSYSMDCQDPNANCTT-PSPTPY-----CPFASDGYCDSYYNTEDCDWDGGDCCAYGCSSTTCLDPIY-GCDSITTSYGDSDDSTSTFITYTTSSDDSGCFDGVWAVSDGKCDSGNNNAACDYDGGDCCECDC 390          
BLAST of mRNA_F-serratus_M_contig1042.441.1 vs. uniprot
Match: D8LSC0_ECTSI (Polymorphic Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI)

HSP 1 Score: 121 bits (304), Expect = 5.980e-29
Identity = 69/164 (42.07%), Postives = 89/164 (54.27%), Query Frame = 1
Query:    1 VSSIGNSYCDIGNNNEACGWDGGDCCECTCVFSPEKDGSCERFSCFDPNSGCADDPGHLGYTNCTGVSFINDGRCDYTNNNEACDWDGKDCCECTCIDGYYYGCGVYG-YACLDPNAECTDPRLL-EYSNCSGAVNWIGDGFCDPINNNEACDWDGGDCCECTC 486
            V+ IGN  CD   N  +CG+DGGDCC CTC   P    +   F C  P+ G   DP               DG C+  NN+ AC +DG DCCEC+C+DG  + CG +  + C DP   C DP L+ E+ +C+G    IGDG C+P NN  +C +DGGD  E  C
Sbjct:   37 VTDIGNGNCDAALNVASCGYDGGDCCSCTCNDGPLHLCADSDFDCMYPDCG---DPAVTSSDAVCYEDVQGDGMCNEENNSAACGYDGGDCCECSCVDGPLFECGSFSIFDCRDP--ACYDPALVAEFPDCTGDWFKIGDGACNPENNIASCGYDGGDGGELDC 195          
BLAST of mRNA_F-serratus_M_contig1042.441.1 vs. uniprot
Match: A0A6H5KB04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB04_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 8.610e-29
Identity = 71/174 (40.80%), Postives = 89/174 (51.15%), Query Frame = 1
Query:    4 SSIGNSYCDIGNNNEACGWDGGDCCECTCVFSPEKDGSCERFSCFDPNSGCADDPGHLG--YTNCTGVSFINDGRCDYTNNNEACDWDGKDCCECTCI--------DGYYYGCGVYGYACLDPNAECT---DPRLLEYSNCSGAVNWIGDGFCDPINNNEACDWDGGDCCECTC 486
            + IG+ YC    N   C            V   + D SC RF+C DP + C DD       + NC     + DG CD  NNNEAC +DG DCCECTC         D + Y C  +  +C+DPNA C    D  +  + NC G V+ IG+G+CD  NN E C +DGGDCC CTC
Sbjct:   40 TGIGDGYCSENLNTPECE-----------VGVYDDDWSCTRFACIDPEAACVDDDDITVDMFENCDYALSVGDGWCDEGNNNEACGYDGGDCCECTCEYESPYDWDDDWDYHCREF--SCIDPNAACVSDDDITVDMFENC-GYVSGIGNGWCDRNNNKEECGYDGGDCCSCTC 199          
BLAST of mRNA_F-serratus_M_contig1042.441.1 vs. uniprot
Match: D7FX76_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX76_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 1.000e-24
Identity = 63/159 (39.62%), Postives = 80/159 (50.31%), Query Frame = 1
Query:    1 VSSIGNSYCDIGNNNEACGWDGGDCCECTCVFSPEKDGSC----ERFSCFDPNSGCADDPGHLGYTNCTGVSFIN--DGRCDYTNNNEACDWDGKDCCECTCID----GYYYGCGVYGYACLDPNA--EC-TDPRL------LEYSNCSGAVNWIGDGF 420
            +  IG+ YCD  NN  ACG+DGGDCC CTC    + +  C    + + C DP+    DD     +  C  ++  +  DG CD   N   C +DG DCC CTC D    GYY  CG YGY C+DP A   C TD          ++  C G +  IGDGF
Sbjct:  164 IPHIGDGYCDEDNNTAACGFDGGDCCACTCGVDADVEHECGLLGDGYDCRDPD--VPDDCNLANFAQCEDMNGYDWQDGYCDDDLNTPECGYDGGDCCRCTCRDYNSWGYYNSCGYYGYDCMDPEAPSSCSTDSPTPSPAAGTDWPECEGYLYAIGDGF 320          
BLAST of mRNA_F-serratus_M_contig1042.441.1 vs. uniprot
Match: A0A6H5K4R2_9PHAE (LNR domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4R2_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 5.220e-24
Identity = 59/144 (40.97%), Postives = 75/144 (52.08%), Query Frame = 1
Query:   55 GWDGGDCCECTCVFSPEKDGSCERFSCFDPNSGCADDPGHLG--YTNCTGVSFINDGRCDYTNNNEACDWDGKDCCECTCIDGYY------YGC--GVYG-YACLDPNAECTDPRLLEYSNCSGA-VNWIGDGFCDPINNNEAC 450
            G+DGGDCCECTC       G    ++C DP + C DD         NC   S I +G CD   NNE C +DG DCCECTC    Y       GC  G+YG +AC+DP+A C D  ++            IG+G+CD +NN+  C
Sbjct:    2 GFDGGDCCECTCEDGEYTCGQYVGYACIDPGAACVDDDAVTVDMMENCYDASRIGNGACDSLLNNEECAYDGGDCCECTCDPSRYPWYDSGEGCQTGMYGGFACIDPDAPCVDDDIVTVEMMDLCYTGQIGNGYCDDVNNSPEC 145          
BLAST of mRNA_F-serratus_M_contig1042.441.1 vs. uniprot
Match: A0A7R9U5U1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U5U1_9STRA)

HSP 1 Score: 104 bits (259), Expect = 6.640e-23
Identity = 63/158 (39.87%), Postives = 76/158 (48.10%), Query Frame = 1
Query:   25 CDIGNNNEACGWDGGDCCECTCV--FSPEKDGSCERFSCFDPNSGCADDPGHLGYTNCT--GVSFINDGRCDYTNNNEACDWDGKDCCECTCIDGYYYGCGVYGYACLDPNAECTDPRLLEYSNCSGAVNWIGDGFCDPINNNEACDWDGGDCCECTC 486
            CD  NN EAC WDGGDCC+ +C+  F  E    C    C DP+           + +CT  G     DG CD   N E C WDG DCC  TC      G    G  C DP +   +P+L     C  +    G+G CD INNNE C +DG DCC  +C
Sbjct:   97 CDERNNVEACDWDGGDCCDASCLSQFDLENMWMCGNTECRDPS-----------FFHCTYPGAQVNGDGICDLDFNTEECSWDGGDCCLLTCS-----GALCSGEFCADPGS-IPEPQLPPVEECDASR--AGNGICDAINNNEKCQFDGNDCCRPSC 235          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1042.441.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSR3_ECTSI1.160e-3643.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G4F9_ECTSI5.230e-3544.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXR2_9PHAE3.790e-3344.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTT4_9PHAE2.990e-3243.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J6K0_9PHAE7.390e-3143.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSC0_ECTSI5.980e-2942.07Polymorphic Outer membrane protein G/I family n=3 ... [more]
A0A6H5KB04_9PHAE8.610e-2940.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FX76_ECTSI1.000e-2439.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K4R2_9PHAE5.220e-2440.97LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7R9U5U1_9STRA6.640e-2339.87Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1042contigF-serratus_M_contig1042:230721..231206 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score163.3
Seed ortholog evalue9.4e-38
Seed eggNOG ortholog2880.D7G5Y7
Hectar predicted targeting categoryother localisation
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size486
Cds size486
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928857.993514-CDS-F-serratus_M_contig1042:230720..2312061622928857.993514-CDS-F-serratus_M_contig1042:230720..231206Fucus serratus maleCDSF-serratus_M_contig1042 230721..231206 -
1690962603.9077044-CDS-F-serratus_M_contig1042:230720..2312061690962603.9077044-CDS-F-serratus_M_contig1042:230720..231206Fucus serratus maleCDSF-serratus_M_contig1042 230721..231206 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1042.441.1prot_F-serratus_M_contig1042.441.1Fucus serratus malepolypeptideF-serratus_M_contig1042 230721..231206 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1042.441.1

>prot_F-serratus_M_contig1042.441.1 ID=prot_F-serratus_M_contig1042.441.1|Name=mRNA_F-serratus_M_contig1042.441.1|organism=Fucus serratus male|type=polypeptide|length=162bp
VSSIGNSYCDIGNNNEACGWDGGDCCECTCVFSPEKDGSCERFSCFDPNS
GCADDPGHLGYTNCTGVSFINDGRCDYTNNNEACDWDGKDCCECTCIDGY
YYGCGVYGYACLDPNAECTDPRLLEYSNCSGAVNWIGDGFCDPINNNEAC
DWDGGDCCECTC
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mRNA from alignment at F-serratus_M_contig1042:230721..231206-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1042.441.1 ID=mRNA_F-serratus_M_contig1042.441.1|Name=mRNA_F-serratus_M_contig1042.441.1|organism=Fucus serratus male|type=mRNA|length=486bp|location=Sequence derived from alignment at F-serratus_M_contig1042:230721..231206- (Fucus serratus male)
GTGTCATCCATCGGAAACAGCTATTGCGACATCGGCAACAATAACGAGGC TTGTGGCTGGGATGGAGGAGACTGTTGTGAATGTACGTGTGTCTTTAGCC CCGAAAAAGACGGCAGTTGTGAGCGTTTTTCGTGTTTTGACCCAAACTCA GGTTGTGCTGACGATCCAGGCCACCTCGGGTACACCAACTGCACTGGGGT GTCATTCATCAACGACGGTCGGTGTGACTACACAAACAACAACGAGGCTT GTGACTGGGACGGAAAAGATTGTTGTGAATGTACGTGCATAGACGGATAT TATTACGGTTGCGGTGTATATGGATATGCATGTCTTGACCCAAATGCGGA ATGTACTGATCCACGTCTCCTGGAGTACAGCAACTGCAGTGGGGCTGTCA ATTGGATTGGCGACGGGTTTTGCGACCCTATAAACAACAACGAGGCTTGT GACTGGGATGGAGGAGACTGTTGTGAGTGCACGTGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1042:230721..231206-

>mRNA_F-serratus_M_contig1042.441.1 ID=mRNA_F-serratus_M_contig1042.441.1|Name=mRNA_F-serratus_M_contig1042.441.1|organism=Fucus serratus male|type=CDS|length=972bp|location=Sequence derived from alignment at F-serratus_M_contig1042:230721..231206- (Fucus serratus male)
GTGTCATCCATCGGAAACAGCTATTGCGACATCGGCAACAATAACGAGGC
TTGTGGCTGGGATGGAGGAGACTGTTGTGAATGTACGTGTGTCTTTAGCC
CCGAAAAAGACGGCAGTTGTGAGCGTTTTTCGTGTTTTGACCCAAACTCA
GGTTGTGCTGACGATCCAGGCCACCTCGGGTACACCAACTGCACTGGGGT
GTCATTCATCAACGACGGTCGGTGTGACTACACAAACAACAACGAGGCTT
GTGACTGGGACGGAAAAGATTGTTGTGAATGTACGTGCATAGACGGATAT
TATTACGGTTGCGGTGTATATGGATATGCATGTCTTGACCCAAATGCGGA
ATGTACTGATCCACGTCTCCTGGAGTACAGCAACTGCAGTGGGGCTGTCA
ATTGGATTGGCGACGGGTTTTGCGACCCTATAAACAACAACGAGGCTTGT
GACTGGGATGGAGGAGACTGTTGTGAGTGCACGTGCGTGTCATCCATCGG
AAACAGCTATTGCGACATCGGCAACAATAACGAGGCTTGTGGCTGGGATG
GAGGAGACTGTTGTGAATGTACGTGTGTCTTTAGCCCCGAAAAAGACGGC
AGTTGTGAGCGTTTTTCGTGTTTTGACCCAAACTCAGGTTGTGCTGACGA
TCCAGGCCACCTCGGGTACACCAACTGCACTGGGGTGTCATTCATCAACG
ACGGTCGGTGTGACTACACAAACAACAACGAGGCTTGTGACTGGGACGGA
AAAGATTGTTGTGAATGTACGTGCATAGACGGATATTATTACGGTTGCGG
TGTATATGGATATGCATGTCTTGACCCAAATGCGGAATGTACTGATCCAC
GTCTCCTGGAGTACAGCAACTGCAGTGGGGCTGTCAATTGGATTGGCGAC
GGGTTTTGCGACCCTATAAACAACAACGAGGCTTGTGACTGGGATGGAGG
AGACTGTTGTGAGTGCACGTGC
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