mRNA_F-serratus_M_contig1042.441.1 (mRNA) Fucus serratus male
Overview
Homology
BLAST of mRNA_F-serratus_M_contig1042.441.1 vs. uniprot
Match: D7FSR3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSR3_ECTSI) HSP 1 Score: 136 bits (343), Expect = 1.160e-36 Identity = 72/167 (43.11%), Postives = 89/167 (53.29%), Query Frame = 1 Query: 7 SIGNSYCDIGNNNEACGWDGGDCCECTCVFSPEKDGSCERFSCFDPNSGCADDPGHLG--YTNCTGVSFINDGRCDYTNNNEACDWDGKDCCECTC---IDGYYYGCGVYGYACLDPNAECTDPRLLE--YSNCSGAVNWIGDGFCDPINNNEACDWDGGDCCECTC 486 + G+ +C+ NNNE CG+DGGDCCECTCV + C F+C DP + C DD NC + ++ DG CD NN E CD+DG DCCECTC C+DP A C D + Y C V +GD C+ NN E CD+D GDCCE TC Sbjct: 61 NFGDGFCNDYNNNEQCGYDGGDCCECTCVVDWSAEFGCTEFACIDPTAPCVDDDDVTADALENCM-MEYLGDGYCDTYNNIEICDYDGGDCCECTCGSDSTDVLDXXXXXXXXCIDPTASCFDENITVDMYEYCD--VELLGDSICNLSNNFEVCDYDFGDCCEATC 224
BLAST of mRNA_F-serratus_M_contig1042.441.1 vs. uniprot
Match: D7G4F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F9_ECTSI) HSP 1 Score: 136 bits (343), Expect = 5.230e-35 Identity = 80/178 (44.94%), Postives = 102/178 (57.30%), Query Frame = 1 Query: 13 GNSYCDIGNNNEACGWDGGDCCECTCVFSPE---------KDGSCERFSCFDPNSGC-ADDPGHLGYTNCTGVSFINDGRCDYTNNNEACDWDGKDCCECTCI--------DGYYYGCGVYGYACLDPNAECT--DPRLLEYSNCSGAVNWIGDGFCDPINNNEACDWDGGDCCECTC 486 G+ YC NNN CG+DGGDCCECTC +P+ K+GS F+C DP++ C A+D + + + DG CD NNNE C +DG DCCECTC + Y CG G+AC+DP+A C D ++ AV +GDG+CD NNN AC +DGGDCCECTC Sbjct: 37 GDGYCTPPNNNAECGYDGGDCCECTCQ-NPQGGDHHWICSKNGS--GFACVDPDAPCYAEDGVTVEASQECDFWDLGDGWCDQVNNNELCGYDGGDCCECTCEVPTDDDWDNDLYVACGE-GFACIDPSAPCVNDDDITVDVDESCDAVG-MGDGYCDMDNNNAACAYDGGDCCECTC 209
BLAST of mRNA_F-serratus_M_contig1042.441.1 vs. uniprot
Match: A0A6H5JXR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXR2_9PHAE) HSP 1 Score: 133 bits (335), Expect = 3.790e-33 Identity = 74/165 (44.85%), Postives = 94/165 (56.97%), Query Frame = 1 Query: 10 IGNSYCDIGNNNEACGWDGGDCCECTCV--FSPEKDGSCERFS-CFDPNSGCADDPGHLGYT--NCTGVSFINDGRCDYTNNNEACDWDGKDCCECTCI-----------DGYYYGCGVYGYACLDPNAECT--DPRLLEYSNCSGAVNWIGDGFCDPINNNEAC 450 +G+ +CD NNNE CG+DGGDCCECTCV + + D +C ++ C DP++ C DD C V + DG CD NNNE C +DG DCCECTC D +Y CG G+AC+DPNA C D ++ AVN +GDG+CD NN EAC Sbjct: 78 LGDGWCDQDNNNEICGYDGGDCCECTCVSPWDDDDDWACRNYNACIDPDAPCVDDDDITAVMVEECGWVRGVGDGWCDEDNNNELCGYDGGDCCECTCEAPPADDDWDWDDDWYGPCGS-GFACIDPNAPCVNDDDITVDVDESCDAVN-MGDGYCDISNNIEAC 240
BLAST of mRNA_F-serratus_M_contig1042.441.1 vs. uniprot
Match: A0A6H5JTT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT4_9PHAE) HSP 1 Score: 130 bits (327), Expect = 2.990e-32 Identity = 76/175 (43.43%), Postives = 94/175 (53.71%), Query Frame = 1 Query: 1 VSSIGNSYCDIGNNNEACGWDGGDCCECTCVFSPEKDGSCERFSCFDPNSGCADDPGHLGYT--NCTGVSFINDGRCDYTNNNEACDWDGKDCCECTCI--------DGYYYGCGVYGYACLDPNAECT---DPRLLEYSNCSGAVNWIGDGFCDPINNNEACDWDGGDCCECTC 486 + + + CD NNNE CG+DGGDCC CTC+ + G F+C DP++ CADD T NC GV I DG+CD NN E C +DG DCC CTC DG +AC+DP+A C D + C G GDG+CD NNN+ C +D GDCC CTC Sbjct: 181 IVHLADGDCDQINNNEECGYDGGDCCFCTCLDDFYECGI-RGFACIDPSAECADDDDVTVDTVENC-GVRSIGDGQCDLDNNREECHYDGGDCCSCTCQVPDDDSGDDGSLCSESTV-FACIDPDAPCVNDDDITVDMMDTCGGHPINFGDGWCDDDNNNKECGYDSGDCCSCTC 352
BLAST of mRNA_F-serratus_M_contig1042.441.1 vs. uniprot
Match: A0A6H5J6K0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6K0_9PHAE) HSP 1 Score: 127 bits (318), Expect = 7.390e-31 Identity = 75/171 (43.86%), Postives = 85/171 (49.71%), Query Frame = 1 Query: 1 VSSIGNSYCDIGNNNEACGWDGGDCCECTCVFSPEKDGSCERFSCFDPNSGCADDPGHLGYTNCTGVSFINDGRCDYTNNNEACDWDGKDCC-----ECTCIDGYYYGCGV----YGYACLDPNAECTDPRLLEYSNCSGAVNWIGDGFCDPINNNEACDWDGGDCCECTC 486 + IG+ CD NNNE CGWDGGDCC CTC S S C DPN+ C P Y F +DG CD N E CDWDG DCC TC+D Y GC YG + + T + S C V + DG CD NNN ACD+DGGDCCEC C Sbjct: 227 IYMIGDGSCDYYNNNEECGWDGGDCCSCTCEGSYYYSCSSYSMDCQDPNANCTT-PSPTPY-----CPFASDGYCDSYYNTEDCDWDGGDCCAYGCSSTTCLDPIY-GCDSITTSYGDSDDSTSTFITYTTSSDDSGCFDGVWAVSDGKCDSGNNNAACDYDGGDCCECDC 390
BLAST of mRNA_F-serratus_M_contig1042.441.1 vs. uniprot
Match: D8LSC0_ECTSI (Polymorphic Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI) HSP 1 Score: 121 bits (304), Expect = 5.980e-29 Identity = 69/164 (42.07%), Postives = 89/164 (54.27%), Query Frame = 1 Query: 1 VSSIGNSYCDIGNNNEACGWDGGDCCECTCVFSPEKDGSCERFSCFDPNSGCADDPGHLGYTNCTGVSFINDGRCDYTNNNEACDWDGKDCCECTCIDGYYYGCGVYG-YACLDPNAECTDPRLL-EYSNCSGAVNWIGDGFCDPINNNEACDWDGGDCCECTC 486 V+ IGN CD N +CG+DGGDCC CTC P + F C P+ G DP DG C+ NN+ AC +DG DCCEC+C+DG + CG + + C DP C DP L+ E+ +C+G IGDG C+P NN +C +DGGD E C Sbjct: 37 VTDIGNGNCDAALNVASCGYDGGDCCSCTCNDGPLHLCADSDFDCMYPDCG---DPAVTSSDAVCYEDVQGDGMCNEENNSAACGYDGGDCCECSCVDGPLFECGSFSIFDCRDP--ACYDPALVAEFPDCTGDWFKIGDGACNPENNIASCGYDGGDGGELDC 195
BLAST of mRNA_F-serratus_M_contig1042.441.1 vs. uniprot
Match: A0A6H5KB04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB04_9PHAE) HSP 1 Score: 120 bits (301), Expect = 8.610e-29 Identity = 71/174 (40.80%), Postives = 89/174 (51.15%), Query Frame = 1 Query: 4 SSIGNSYCDIGNNNEACGWDGGDCCECTCVFSPEKDGSCERFSCFDPNSGCADDPGHLG--YTNCTGVSFINDGRCDYTNNNEACDWDGKDCCECTCI--------DGYYYGCGVYGYACLDPNAECT---DPRLLEYSNCSGAVNWIGDGFCDPINNNEACDWDGGDCCECTC 486 + IG+ YC N C V + D SC RF+C DP + C DD + NC + DG CD NNNEAC +DG DCCECTC D + Y C + +C+DPNA C D + + NC G V+ IG+G+CD NN E C +DGGDCC CTC Sbjct: 40 TGIGDGYCSENLNTPECE-----------VGVYDDDWSCTRFACIDPEAACVDDDDITVDMFENCDYALSVGDGWCDEGNNNEACGYDGGDCCECTCEYESPYDWDDDWDYHCREF--SCIDPNAACVSDDDITVDMFENC-GYVSGIGNGWCDRNNNKEECGYDGGDCCSCTC 199
BLAST of mRNA_F-serratus_M_contig1042.441.1 vs. uniprot
Match: D7FX76_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX76_ECTSI) HSP 1 Score: 107 bits (267), Expect = 1.000e-24 Identity = 63/159 (39.62%), Postives = 80/159 (50.31%), Query Frame = 1 Query: 1 VSSIGNSYCDIGNNNEACGWDGGDCCECTCVFSPEKDGSC----ERFSCFDPNSGCADDPGHLGYTNCTGVSFIN--DGRCDYTNNNEACDWDGKDCCECTCID----GYYYGCGVYGYACLDPNA--EC-TDPRL------LEYSNCSGAVNWIGDGF 420 + IG+ YCD NN ACG+DGGDCC CTC + + C + + C DP+ DD + C ++ + DG CD N C +DG DCC CTC D GYY CG YGY C+DP A C TD ++ C G + IGDGF Sbjct: 164 IPHIGDGYCDEDNNTAACGFDGGDCCACTCGVDADVEHECGLLGDGYDCRDPD--VPDDCNLANFAQCEDMNGYDWQDGYCDDDLNTPECGYDGGDCCRCTCRDYNSWGYYNSCGYYGYDCMDPEAPSSCSTDSPTPSPAAGTDWPECEGYLYAIGDGF 320
BLAST of mRNA_F-serratus_M_contig1042.441.1 vs. uniprot
Match: A0A6H5K4R2_9PHAE (LNR domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4R2_9PHAE) HSP 1 Score: 105 bits (261), Expect = 5.220e-24 Identity = 59/144 (40.97%), Postives = 75/144 (52.08%), Query Frame = 1 Query: 55 GWDGGDCCECTCVFSPEKDGSCERFSCFDPNSGCADDPGHLG--YTNCTGVSFINDGRCDYTNNNEACDWDGKDCCECTCIDGYY------YGC--GVYG-YACLDPNAECTDPRLLEYSNCSGA-VNWIGDGFCDPINNNEAC 450 G+DGGDCCECTC G ++C DP + C DD NC S I +G CD NNE C +DG DCCECTC Y GC G+YG +AC+DP+A C D ++ IG+G+CD +NN+ C Sbjct: 2 GFDGGDCCECTCEDGEYTCGQYVGYACIDPGAACVDDDAVTVDMMENCYDASRIGNGACDSLLNNEECAYDGGDCCECTCDPSRYPWYDSGEGCQTGMYGGFACIDPDAPCVDDDIVTVEMMDLCYTGQIGNGYCDDVNNSPEC 145
BLAST of mRNA_F-serratus_M_contig1042.441.1 vs. uniprot
Match: A0A7R9U5U1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U5U1_9STRA) HSP 1 Score: 104 bits (259), Expect = 6.640e-23 Identity = 63/158 (39.87%), Postives = 76/158 (48.10%), Query Frame = 1 Query: 25 CDIGNNNEACGWDGGDCCECTCV--FSPEKDGSCERFSCFDPNSGCADDPGHLGYTNCT--GVSFINDGRCDYTNNNEACDWDGKDCCECTCIDGYYYGCGVYGYACLDPNAECTDPRLLEYSNCSGAVNWIGDGFCDPINNNEACDWDGGDCCECTC 486 CD NN EAC WDGGDCC+ +C+ F E C C DP+ + +CT G DG CD N E C WDG DCC TC G G C DP + +P+L C + G+G CD INNNE C +DG DCC +C Sbjct: 97 CDERNNVEACDWDGGDCCDASCLSQFDLENMWMCGNTECRDPS-----------FFHCTYPGAQVNGDGICDLDFNTEECSWDGGDCCLLTCS-----GALCSGEFCADPGS-IPEPQLPPVEECDASR--AGNGICDAINNNEKCQFDGNDCCRPSC 235 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1042.441.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1042.441.1 >prot_F-serratus_M_contig1042.441.1 ID=prot_F-serratus_M_contig1042.441.1|Name=mRNA_F-serratus_M_contig1042.441.1|organism=Fucus serratus male|type=polypeptide|length=162bp VSSIGNSYCDIGNNNEACGWDGGDCCECTCVFSPEKDGSCERFSCFDPNSback to top mRNA from alignment at F-serratus_M_contig1042:230721..231206- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1042.441.1 ID=mRNA_F-serratus_M_contig1042.441.1|Name=mRNA_F-serratus_M_contig1042.441.1|organism=Fucus serratus male|type=mRNA|length=486bp|location=Sequence derived from alignment at F-serratus_M_contig1042:230721..231206- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1042:230721..231206- >mRNA_F-serratus_M_contig1042.441.1 ID=mRNA_F-serratus_M_contig1042.441.1|Name=mRNA_F-serratus_M_contig1042.441.1|organism=Fucus serratus male|type=CDS|length=972bp|location=Sequence derived from alignment at F-serratus_M_contig1042:230721..231206- (Fucus serratus male)back to top |