mRNA_F-serratus_M_contig1042.441.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1042.441.1
Unique NamemRNA_F-serratus_M_contig1042.441.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1042.441.1 vs. uniprot
Match: D7G0S4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S4_ECTSI)

HSP 1 Score: 161 bits (407), Expect = 5.670e-46
Identity = 88/174 (50.57%), Postives = 104/174 (59.77%), Query Frame = 1
Query:   10 IGNSYCDIGNNNEACGWDGGDCCECTCVFSPEKDGSCERFS-CFDPNSGCADDPGHLG--YTNCTGVSFINDGRCDYTNNNEACDWDGKDCCECTC--------IDGYYY-GCGVYGYACLDPNAECT---DPRLLEYSNCSGAVNWIGDGFCDPINNNEACDWDGGDCCECTC 486
             G+ +CD  NNNE CG+DGGDCCECTCV + + D SC   S C DP++ C DD         NC  V  + +G CD  NNNE C +DG DCCECTC         D Y+  GCG  G+AC+DPNA C    D  L    NC      +G+GFCD  NNNEAC +DGGDCCECTC
Sbjct:   61 FGDGWCDQENNNEICGYDGGDCCECTCVNAWDDDYSCAANSACIDPSAPCVDDDDVTVDMVENCGYVGSVGNGWCDEENNNEGCGYDGGDCCECTCQPLDTDDGTDDYFQNGCGN-GFACIDPNAPCVNDDDITLDIVENCDSVA--VGNGFCDMDNNNEACAYDGGDCCECTC 231          
BLAST of mRNA_F-serratus_M_contig1042.441.1 vs. uniprot
Match: D7G3F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F4_ECTSI)

HSP 1 Score: 155 bits (391), Expect = 8.960e-42
Identity = 78/164 (47.56%), Postives = 95/164 (57.93%), Query Frame = 1
Query:   10 IGNSYCDIGNNNEACGWDGGDCCECTCVFSPEKDGSCERFSCFDPNSGCADDPGHL--GYTNCTGVSFINDGRCDYTNNNEACDWDGKDCCECTCIDGYYYGCGVYGYACLDPNAECTDPRLLE---YSNCSGAVNWIGDGFCDPINNNEACDWDGGDCCECTC 486
            IG+ +CD  NNNE C +DGGDCCECTC  S + D  C  F+C DPN+ C DD         NC+  + I DG C    N   C +DG DCC CTC   Y    G   +AC+DP A C D   +    + NC   V+ IG+G+CD  NN EAC +DGGDCCECTC
Sbjct:   63 IGDGWCDEDNNNELCAYDGGDCCECTCEGSEDDDWHCRNFACVDPNAPCVDDDSVTIDMIENCSWSTGIGDGYCSENLNTPECAYDGGDCCSCTCESPYDDDWGCMWFACIDPEAACVDDDDITVDMFENCEYPVD-IGNGWCDEANNIEACGYDGGDCCECTC 225          
BLAST of mRNA_F-serratus_M_contig1042.441.1 vs. uniprot
Match: D7G5Y7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y7_ECTSI)

HSP 1 Score: 157 bits (396), Expect = 2.560e-41
Identity = 77/165 (46.67%), Postives = 96/165 (58.18%), Query Frame = 1
Query:    1 VSSIGNSYCDIGNNNEACGWDGGDCCECTCVFSPEKDGSCERFSCFDPNSG---CADDPGHLGYTNCTGVSFINDGRCDYTNNNEACDWDGKDCCECTCIDGYYYGCGVYGYACLDPNAECTDPRLLEYSNCSGAVNWIGDGFCDPINNNEACDWDGGDCCECTC 486
            V+ IGN  CD   N  +CG+DGGDCC CTCV  P    S   F C  P+ G   C +D             +  DG CD  NN+ +CD+DG DCCEC+CIDG  YGCG  G+ACLDP+   T     E + C  +  W+ DG+CD  NN  +CD+DGGDCCEC+C
Sbjct:   33 VTDIGNGQCDAVLNVPSCGYDGGDCCPCTCVDGPTHSCSTSDFDCMYPDCGGSECHED-------------WAKDGFCDLVNNHPSCDYDGGDCCECSCIDGPDYGCGSIGFACLDPDCGNTTETAPENTTCEES--WMNDGYCDSSNNYPSCDYDGGDCCECSC 182          
BLAST of mRNA_F-serratus_M_contig1042.441.1 vs. uniprot
Match: A0A6H5JVP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVP4_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 1.090e-40
Identity = 83/181 (45.86%), Postives = 98/181 (54.14%), Query Frame = 1
Query:    1 VSSIGNSYCDIGNNNEACGWDGGDCCECTCVFSPEKDGSC----ERFSCFDPNSGCADDPGHLGYTNCTGVSFIN--DGRCDYTNNNEACDWDGKDCCECTCID----GYYYGCGVYGYACLDPNA--EC-TDPRL------LEYSNCSGAVNWIGDGFCDPINNNEACDWDGGDCCECTC 486
            +  IG+ YCD  NN  ACG+DGGDCC CTC    E D  C    + + C DP+    +D     +  C G++  +  DG CD   N   C +DG DCC CTC D    GYY  CG YGY CLDP A   C TD          ++  C G +  IGDG CD  NNNE CDWDGGDCC CTC
Sbjct:  166 IPHIGDGYCDEDNNTAACGFDGGDCCACTCGMDAEVDHECGLLNDGYDCRDPD--VPEDCNLANFAQCEGMNGYDWQDGYCDDDLNTAECGYDGGDCCRCTCRDYDSWGYYSSCGYYGYDCLDPEAPSSCSTDSPTPSPAAGTDWPECEGYLFEIGDGHCDYYNNNEECDWDGGDCCACTC 344          
BLAST of mRNA_F-serratus_M_contig1042.441.1 vs. uniprot
Match: A0A6H5JM92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM92_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 1.690e-39
Identity = 83/179 (46.37%), Postives = 100/179 (55.87%), Query Frame = 1
Query:    1 VSSIGNSYCDIGNNNEACGWDGGDCCECTCVFSPEKD-----------GSCER-FSCFDPNSGCADDPG-HLGYTNCTGVSFINDGRCDYTNNNEACDWDGKDCCECTCIDGYYYGCGVYG-YACLDPNAECTDPRLLEYS---NCSGAVNWIGDGFCDPINNNEACDWDGGDCCECTC 486
            V  +G+ +C   NNNE CG+DGGDCCECTCV  P  D           G+C   F+C DP++ C DD    +G         I DG C+  NNNEAC +DG DCCECTC D     CG +  +AC+DP A C D          NC      IG+G+CD  NNNE C +DGGDCCECTC
Sbjct:  137 VRGLGDGWCHEENNNELCGYDGGDCCECTCVAPPADDDWXXXXXXXXYGACGGGFACIDPSAACVDDDEVTVGMVESCDTVSIGDGYCNMDNNNEACAYDGGDCCECTCEDTPNNRCGRWSSFACIDPAAPCVDDDSFTVDMIDNCE-YPGGIGNGWCDVDNNNELCAYDGGDCCECTC 314          
BLAST of mRNA_F-serratus_M_contig1042.441.1 vs. uniprot
Match: D8LEP6_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEP6_ECTSI)

HSP 1 Score: 145 bits (367), Expect = 3.290e-39
Identity = 80/176 (45.45%), Postives = 99/176 (56.25%), Query Frame = 1
Query:    1 VSSIGNSYCDIGNNNEACGWDGGDCCECTCVFSPEKDGSCERFSCFDPNSGCADDPGHLG--YTNCTGVSFINDGRCDYTNNNEACDWDGKDCCECTCIDGYY------YGC--GVYG-YACLDPNAECTDPRLLEYSN---CSGAVNWIGDGFCDPINNNEACDWDGGDCCECTC 486
               IGN  C++GNN E CG+DGGDCCECTC       G    ++C DP++ C DD         NC   S I +G CD   NNE C +DG DCCECTC    Y       GC  G+YG +AC+DP+A C D  ++       CS     IG+G+CD  NN+  C +DGGDCCECTC
Sbjct:   95 AQDIGNGRCNMGNNIEECGFDGGDCCECTCEDGEYTCGQYYGYACIDPDATCVDDDAVTVDMMENCYDPSRIGNGACDSLLNNEDCAYDGGDCCECTCDPSRYPWYDSGVGCQTGMYGGFACIDPDAPCVDDDIVTAEMMDLCS--TGQIGNGYCDDSNNSPECAYDGGDCCECTC 268          
BLAST of mRNA_F-serratus_M_contig1042.441.1 vs. uniprot
Match: A0A6H5KJK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJK5_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 1.330e-38
Identity = 75/167 (44.91%), Postives = 92/167 (55.09%), Query Frame = 1
Query:    7 SIGNSYCDIGNNNEACGWDGGDCCECTCVFSPEKDGSCERFSCFDPNSGCADDPGHLG--YTNCTGVSFINDGRCDYTNNNEACDWDGKDCCECTC---IDGYYYGCGVYGYACLDPNAECTDPRLLE--YSNCSGAVNWIGDGFCDPINNNEACDWDGGDCCECTC 486
            + G+ +C+  NNNE CG+DGGDCCECTCV     +  C  F+C DP + C DD         NC  + ++ DG CD  NNNE CD+DG DCCECTC         G     + C+DP A C D  +    Y  C   V  +GD  C P NN E CD+D GDCCE TC
Sbjct:  210 NFGDGFCNDYNNNEQCGYDGGDCCECTCVVDWSAEFGCTEFACIDPTAPCVDDDDVTADALENCM-IEYLGDGYCDTYNNNEICDYDGGDCCECTCGSDSTDVLVGSDCSDFVCIDPTASCFDESITVDMYEYCD--VELLGDSICQPSNNFEVCDYDFGDCCEATC 373          
BLAST of mRNA_F-serratus_M_contig1042.441.1 vs. uniprot
Match: D7FI87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI87_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 2.680e-38
Identity = 79/175 (45.14%), Postives = 100/175 (57.14%), Query Frame = 1
Query:   10 IGNSYCDIGNNNEACGWDGGDCCECTCV--FSPEKDGSCER----FSCFDPNSGCADDPGHLGYT--NCTGVSFINDGRCDYTNNNEACDWDGKDCCECTCI-----DGYYYGCGVYGYACLDPNAECTDP---RLLEYSNCSGAVNWIGDGFCDPINNNEACDWDGGDCCECTC 486
             G+ YC + NNN  CG+DGGDCCECTC   +  + +  C +    F+C DP++ C DD         NC   S + +G CD  NNNE C +D  DCCECTC+     D +Y      G+AC+DP A C D     +    NC G V  +GDG+CD  NNNE C +DGGDCCECTC
Sbjct:   29 FGDGYCQLQNNNAECGYDGGDCCECTCQNPWGDDDEWFCSKDGYGFACIDPDAPCVDDDDITIEIAQNCV-TSDLGNGYCDEDNNNEICGYDFGDCCECTCVSPWDDDDWYCSSDGSGFACIDPAAPCVDDDDVTIDMVENC-GYVRGLGDGWCDDWNNNELCGYDGGDCCECTC 201          
BLAST of mRNA_F-serratus_M_contig1042.441.1 vs. uniprot
Match: D8LEX5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEX5_ECTSI)

HSP 1 Score: 142 bits (359), Expect = 2.290e-37
Identity = 74/168 (44.05%), Postives = 95/168 (56.55%), Query Frame = 1
Query:    7 SIGNSYCDIGNNNEACGWDGGDCCECTCVFSP--EKDGSCERFSCFDPNSGCADDPGHLG--YTNCTGVSFINDGRCDYTNNNEACDWDGKDCCECTCIDGYYYGC--GVYGYACLDPNAECTDPRLLE--YSNCSGAVNWIGDGFCDPINNNEACDWDGGDCCECTC 486
            + G+ +CD  NNNE CG+DGGDCCECTCV S     + SC  F+C DP + CADD         +C  + ++ DG CD +NN E C +D  DCCECT               +AC+DP A C D  +    + NC   +  +GDG+C   NNNE CD+D GDCCE TC
Sbjct:    7 NFGDGFCDDYNNNEQCGYDGGDCCECTCVVSTLWSTESSCTEFACIDPRAPCADDDDITADAVESCI-IDYLGDGICDTSNNIETCGYDSGDCCECTXXXXXXXXXXXSCSDFACVDPMASCFDESITVDMFENCDAEL--LGDGYCQESNNNEICDYDFGDCCESTC 171          
BLAST of mRNA_F-serratus_M_contig1042.441.1 vs. uniprot
Match: D7FX77_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX77_ECTSI)

HSP 1 Score: 145 bits (365), Expect = 3.480e-37
Identity = 81/187 (43.32%), Postives = 99/187 (52.94%), Query Frame = 1
Query:    1 VSSIGNSYCDIGNNNEACGWDGGDCCECTCVFSPEKDGS--C----ERFSCFDPN--SGCADDPGH---LGYTNCTGVSFI-NDGRCDYTNNNEACDWDGKDCCECTCID----GYYYGCGVYGYACLDPNA--EC-TDPRL------LEYSNCSGAVNWIGDGFCDPINNNEACDWDGGDCCECTC 486
             + I + YCD   NN  CGWDGGDCC CTC    +++ +  C    + + C DP+    C   P     +GY +C    +   DG CD   N   C +DG DCC CTC D    GYY  CG YGY C+DP+A   C TD          ++  C G +  IGDG CD  NNNE CDWDGGDCC CTC
Sbjct:   71 TNHIKDGYCDTDLNNAECGWDGGDCCACTCGSDSDEELAHPCGQLGDGYDCLDPDVPDDCGVTPSPAAAIGYPDCEEYLYEWQDGVCDDNLNTAECGYDGGDCCRCTCRDYNSWGYYTNCGYYGYDCMDPDAPSSCSTDSPTPSPAAGTDWPECEGYIYMIGDGSCDYYNNNEECDWDGGDCCSCTC 257          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1042.441.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0S4_ECTSI5.670e-4650.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G3F4_ECTSI8.960e-4247.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G5Y7_ECTSI2.560e-4146.67Polymorphic Outer membrane protein G/I family n=1 ... [more]
A0A6H5JVP4_9PHAE1.090e-4045.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JM92_9PHAE1.690e-3946.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LEP6_ECTSI3.290e-3945.45Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
A0A6H5KJK5_9PHAE1.330e-3844.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI87_ECTSI2.680e-3845.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LEX5_ECTSI2.290e-3744.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FX77_ECTSI3.480e-3743.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1042contigF-serratus_M_contig1042:230721..231206 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score163.3
Seed ortholog evalue9.4e-38
Seed eggNOG ortholog2880.D7G5Y7
Hectar predicted targeting categoryother localisation
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size486
Cds size486
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928857.993514-CDS-F-serratus_M_contig1042:230720..2312061622928857.993514-CDS-F-serratus_M_contig1042:230720..231206Fucus serratus maleCDSF-serratus_M_contig1042 230721..231206 -
1690962603.9077044-CDS-F-serratus_M_contig1042:230720..2312061690962603.9077044-CDS-F-serratus_M_contig1042:230720..231206Fucus serratus maleCDSF-serratus_M_contig1042 230721..231206 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1042.441.1prot_F-serratus_M_contig1042.441.1Fucus serratus malepolypeptideF-serratus_M_contig1042 230721..231206 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1042.441.1

>prot_F-serratus_M_contig1042.441.1 ID=prot_F-serratus_M_contig1042.441.1|Name=mRNA_F-serratus_M_contig1042.441.1|organism=Fucus serratus male|type=polypeptide|length=162bp
VSSIGNSYCDIGNNNEACGWDGGDCCECTCVFSPEKDGSCERFSCFDPNS
GCADDPGHLGYTNCTGVSFINDGRCDYTNNNEACDWDGKDCCECTCIDGY
YYGCGVYGYACLDPNAECTDPRLLEYSNCSGAVNWIGDGFCDPINNNEAC
DWDGGDCCECTC
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mRNA from alignment at F-serratus_M_contig1042:230721..231206-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1042.441.1 ID=mRNA_F-serratus_M_contig1042.441.1|Name=mRNA_F-serratus_M_contig1042.441.1|organism=Fucus serratus male|type=mRNA|length=486bp|location=Sequence derived from alignment at F-serratus_M_contig1042:230721..231206- (Fucus serratus male)
GTGTCATCCATCGGAAACAGCTATTGCGACATCGGCAACAATAACGAGGC TTGTGGCTGGGATGGAGGAGACTGTTGTGAATGTACGTGTGTCTTTAGCC CCGAAAAAGACGGCAGTTGTGAGCGTTTTTCGTGTTTTGACCCAAACTCA GGTTGTGCTGACGATCCAGGCCACCTCGGGTACACCAACTGCACTGGGGT GTCATTCATCAACGACGGTCGGTGTGACTACACAAACAACAACGAGGCTT GTGACTGGGACGGAAAAGATTGTTGTGAATGTACGTGCATAGACGGATAT TATTACGGTTGCGGTGTATATGGATATGCATGTCTTGACCCAAATGCGGA ATGTACTGATCCACGTCTCCTGGAGTACAGCAACTGCAGTGGGGCTGTCA ATTGGATTGGCGACGGGTTTTGCGACCCTATAAACAACAACGAGGCTTGT GACTGGGATGGAGGAGACTGTTGTGAGTGCACGTGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1042:230721..231206-

>mRNA_F-serratus_M_contig1042.441.1 ID=mRNA_F-serratus_M_contig1042.441.1|Name=mRNA_F-serratus_M_contig1042.441.1|organism=Fucus serratus male|type=CDS|length=972bp|location=Sequence derived from alignment at F-serratus_M_contig1042:230721..231206- (Fucus serratus male)
GTGTCATCCATCGGAAACAGCTATTGCGACATCGGCAACAATAACGAGGC
TTGTGGCTGGGATGGAGGAGACTGTTGTGAATGTACGTGTGTCTTTAGCC
CCGAAAAAGACGGCAGTTGTGAGCGTTTTTCGTGTTTTGACCCAAACTCA
GGTTGTGCTGACGATCCAGGCCACCTCGGGTACACCAACTGCACTGGGGT
GTCATTCATCAACGACGGTCGGTGTGACTACACAAACAACAACGAGGCTT
GTGACTGGGACGGAAAAGATTGTTGTGAATGTACGTGCATAGACGGATAT
TATTACGGTTGCGGTGTATATGGATATGCATGTCTTGACCCAAATGCGGA
ATGTACTGATCCACGTCTCCTGGAGTACAGCAACTGCAGTGGGGCTGTCA
ATTGGATTGGCGACGGGTTTTGCGACCCTATAAACAACAACGAGGCTTGT
GACTGGGATGGAGGAGACTGTTGTGAGTGCACGTGCGTGTCATCCATCGG
AAACAGCTATTGCGACATCGGCAACAATAACGAGGCTTGTGGCTGGGATG
GAGGAGACTGTTGTGAATGTACGTGTGTCTTTAGCCCCGAAAAAGACGGC
AGTTGTGAGCGTTTTTCGTGTTTTGACCCAAACTCAGGTTGTGCTGACGA
TCCAGGCCACCTCGGGTACACCAACTGCACTGGGGTGTCATTCATCAACG
ACGGTCGGTGTGACTACACAAACAACAACGAGGCTTGTGACTGGGACGGA
AAAGATTGTTGTGAATGTACGTGCATAGACGGATATTATTACGGTTGCGG
TGTATATGGATATGCATGTCTTGACCCAAATGCGGAATGTACTGATCCAC
GTCTCCTGGAGTACAGCAACTGCAGTGGGGCTGTCAATTGGATTGGCGAC
GGGTTTTGCGACCCTATAAACAACAACGAGGCTTGTGACTGGGATGGAGG
AGACTGTTGTGAGTGCACGTGC
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