mRNA_F-serratus_M_contig1040.426.1 (mRNA) Fucus serratus male
Overview
Homology
BLAST of mRNA_F-serratus_M_contig1040.426.1 vs. uniprot
Match: B8BW57_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BW57_THAPS) HSP 1 Score: 157 bits (396), Expect = 2.630e-42 Identity = 110/311 (35.37%), Postives = 156/311 (50.16%), Query Frame = 1 Query: 25 VAGGICAAVSHTAAVPLDVIKTRMQCAEPGKYRGTWDAFVRICRSEGAQVLFCGAGATVVGYAMQGCLKFGFFELLKPFFSSLFAGGTWGNGVAGGGSVAPTETPVLGSLIAASVAAEVLGSSALTPLEAARIRMVADSDYAPGLRSGIARMISEEG-LSALTRALPAVLAKQIPYTVTKLVTFDIFVRAASRASLGHQSSGDGGGGVALTACCAVAAGMLSSLASQPGDTLLSTLNTEGRWREGQWGQGKRSEEGGREKVESVARAMVRIAREAGFSGLFRGTAARMMHVTSIVTVQLLIYQTVKSMVGI 954 +AGG+ AA+SH PLDV+KTRMQ +A ++I +EG L G G TVVGY ++G LKFG +E LKP F SLF +A GG PTE + A++ A L S L P+E RIR+V D + GL G+ +++ EEG L+ R + + +KQIPYT+ K+ +FDIF +G + + + A A +++ LASQPGD LL+ G + + M ++ E G FRG AR +HV IVT QL+IY +K +G+ Sbjct: 1 IAGGVSAAISHGVTTPLDVVKTRMQTDPSLVNSSPQEAALQIIENEGPAALTVGLGPTVVGYGVEGALKFGVYESLKPMFLSLFH-------IANGGD--PTEP-----YLVAAICAGALASIILCPMEETRIRLVTDPSFGKGLIDGLPKLLKEEGALAPFQRGILPMFSKQIPYTMGKVTSFDIFAGMLYAGLVGFAFMSEKEIALEVEVGAAFLASIVACLASQPGDVLLTATYKNNN---------------GADDI-GFGSTMRKVYAEGGVGAFFRGLNARFLHVGCIVTFQLVIYDQIKQFLGL 281
BLAST of mRNA_F-serratus_M_contig1040.426.1 vs. uniprot
Match: A0A7S0BY06_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BY06_9STRA) HSP 1 Score: 158 bits (399), Expect = 3.730e-42 Identity = 112/319 (35.11%), Postives = 162/319 (50.78%), Query Frame = 1 Query: 19 YFVAGGICAAVSHTAAVPLDVIKTRMQCAEPGKYRGT----WDAFVRICRSEGAQVLFCGAGATVVGYAMQGCLKFGFFELLKPFFSSLFAGGTWGNGVAGGGSVAPTETPVLGSLIAASVAAEVLGSSALTPLEAARIRMVADSDYAP-GLRSGIARMISEEGLSALTRALPAVLAKQIPYTVTKLVTFDIFVRAASRASLGHQSSGDGGGGVALTACCAVAAGMLSSLASQPGDTLLSTL--NTEGRWREGQWGQGKRSEEGGREKVESVARAMVRIAREAGFSGLFRGTAARMMHVTSIVTVQLLIYQTVKSMVGI 954 YFVAGG+CAA SH P+DVIKTR+Q A+P K+ G +A + + EG VL G G TVVGY ++G +KFG +E++KP L G + I AS+ A + + L P+E+ RI++V D YA GL G+ ++ EEGL + + A+LAKQ+PYT+ K V+FD+ V A+L ++ A A +L+ + SQPGD +L+ T G+ S + I +E G G F GT AR++HV I+T QL+IY TVK ++G+ Sbjct: 58 YFVAGGVCAATSHGITTPIDVIKTRIQ-ADPSKFSGPNGGLKNAAALVVKEEGVGVLLGGLGPTVVGYGVEGAMKFGVYEIMKPIMKDLIRGSQ------------------AAAYIGASIIAGAVAAVLLCPMESCRIKIVTDPAYAGMGLMGGLPKLAREEGLLSTFGGIYAMLAKQVPYTIGKQVSFDV-VAGLLYAALAKIELSAVDFKFVISVLSAAIASVLACITSQPGDMILTKTYKTTTGK---------------------SFRNIIADIYKEGGLGGFFTGTGARIVHVGMIITSQLVIYDTVKQLLGL 335
BLAST of mRNA_F-serratus_M_contig1040.426.1 vs. uniprot
Match: A0A7S2ETP5_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2ETP5_TRICV) HSP 1 Score: 157 bits (397), Expect = 6.370e-42 Identity = 110/316 (34.81%), Postives = 170/316 (53.80%), Query Frame = 1 Query: 19 YFVAGGICAAVSHTAAVPLDVIKTRMQCAEPGKY-RGTWDAFVRICRSEGAQVLFCGAGATVVGYAMQGCLKFGFFELLKPFFSSLFAGGTWGNGVAGGGSVAPTETPVLGSLIAASVAAEVLGSSALTPLEAARIRMVADSDYAP-GLRSGIARMISEEGLSALTRALPAVLAKQIPYTVTKLVTFDIFVRAASRASLGHQSSGDGGGGVA--LTACCAVAAGMLSSLASQPGDTLLSTLNTEGRWREGQWGQGKRSEEGGREKVESVARAMVRIAREAGFSGLFRGTAARMMHVTSIVTVQLLIYQTVKSMVGI 954 YFVAGG+CAA SH P+DV+KTRMQ AEP Y +G A + I +++G L G G TV+GY ++G +KFG +E++KP F++L + + + I ASV A + S L P+E+ARIRMV D DYA + + + +++ ++GL++L + A+L+KQ+PYT+ K V+FD+F + S G+ + ++ C A A + + + SQPGD +L+ +G ++E G V +V G F GT AR++HV I+T QL+IY VK +G+ Sbjct: 51 YFVAGGVCAATSHGITTPVDVVKTRMQ-AEPEVYDKGMTSALLSILKTDGPSALLGGLGPTVIGYGIEGAMKFGVYEVMKPVFAALLSDN------------------IAVAYILASVVAGAVASILLCPMESARIRMVTDKDYAEESMVTVLPKLMKDDGLASLFGGIWAMLSKQVPYTMAKQVSFDVFAKLLYSLLSKPGSEGNTAADLKWIVSVCSAFIASIFACIFSQPGDMILTETY-----------KGSKNEGGFFGVVGTVYG-------RGGLPAFFTGTGARIVHVGLIITSQLVIYDIVKQALGL 329
BLAST of mRNA_F-serratus_M_contig1040.426.1 vs. uniprot
Match: R7Q5H3_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q5H3_CHOCR) HSP 1 Score: 159 bits (401), Expect = 6.910e-42 Identity = 112/324 (34.57%), Postives = 168/324 (51.85%), Query Frame = 1 Query: 19 YFVAGGICAAVSHTAAVPLDVIKTRMQCAEPGKYRGTWDAFVRICRSEGAQVLFCGAGATVVGYAMQGCLKFGFFELLKPFFSSLFAGGTWGNGVAGGGSVAPTET--PVLGSLIAASVAAEVLGSSALTPLEAARIRMVADSDYAPGLRSGIARMISEEGLSALTRALPAVLAKQIPYTVTKLVTFDI-------FVRAASRASLGHQSSGDGGGGVALTACCAVAAGMLSSLASQPGDTLLSTLNTEGRWREGQ---WGQGKRSEEGGREKVESVARAMVRIAREAGFSGLFRGTAARMMHVTSIVTVQLLIYQTVKSMVGI 954 +F+AGG+CA ++H A P+DV+KTR+Q G+Y G DAF +I EG L G T GY + G K+ F+E+ K S+ PT P L AA AE + + L P+EA RIR VADS + G+ +G++ ++ EGL + LPA+L KQ+PYTV + V+F++ FVR R G ++ ++++ + AG+ +++ S PGDT+LS +N E EG+ W Q +VR+AR AGF+GLF G AR++ V+ ++ Q LIY ++K GI Sbjct: 85 FFLAGGVCAFLTHAACTPIDVVKTRIQTTS-GRYTGMLDAFRKIVAEEGPLTLLKGLAPTAGGYFLHGAFKYSFYEVFKVLLST-----------------DPTHALKPPLTIAAAAGFLAECIACTLLCPMEAIRIRAVADSAFPNGVFTGLSLLLKSEGLHGWYKGLPAMLMKQVPYTVGQFVSFELAVTLVKGFVRTVLRIE-GEEAF------ASISSIAGLLAGITAAIISHPGDTILSKINQE----EGEGSAWSQ------------------IVRVARTAGFAGLFLGLGARVVQVSCMIGGQFLIYDSIKLWCGI 361
BLAST of mRNA_F-serratus_M_contig1040.426.1 vs. uniprot
Match: A0A7S3L234_9STRA (Hypothetical protein n=2 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L234_9STRA) HSP 1 Score: 160 bits (405), Expect = 1.810e-41 Identity = 118/318 (37.11%), Postives = 161/318 (50.63%), Query Frame = 1 Query: 13 WPYFVAGGICAAVSHTAAVPLDVIKTRMQCAEPGKYRGTWDAFVRICRSEGAQVLFCGAGATVVGYAMQGCLKFGFFELLKPFFSSLFAGGTWGNGVAGGGSVAPTETPVLGSLIAASVAAEVLGSSALTPLEAARIRMVADSDYAPG--LRSGIARMISEEGLSALTRALPAVLAKQIPYTVTKLVTFDIFVRAASRASLGHQSSGDGGGGVALTACCAVAAGMLSSLASQPGDTLLSTLNTEGRWREGQWGQGKRSEEGGREKVESVARAMVRIAREAGFSGLFRGTAARMMHVTSIVTVQLLIYQTVKSMVGIAS 960 W Y++AGG+CAAVSH VP+DVIKTR Q A ++ +EG LF G G TV GY ++G +KFG +E+LKP+ + L + L A+V+ G L P+EA RIR+VA+ YA +R G+ RM+ E + LTR L +L KQIPYT+TK V+FD + ++++ G + + A AA +LS L+SQPGD LLS +N EG R + V + + R G G F G R +HV IVTVQLLIY VK + GIA+ Sbjct: 249 WRYYLAGGVCAAVSHAIPVPIDVIKTRKQVDPLYCNLSMPQATRKLMETEGLSALFVGMGPTVWGYFLEGAVKFGVYEILKPWIALLLP-----------------NSQFLSFCACAAVSGLAAGIM-LCPMEALRIRLVAEPRYAAQGWIRGGL-RMLRAESGAGLTRGLTPMLYKQIPYTITKNVSFDFLTKFL------YKTTATSAGSLVIPFVAAAAASVLSCLSSQPGDMLLSVVNAH---------------EGERRRTRDVMKQIFHSDR--GVRGFFVGVKTRFLHVGMIVTVQLLIYDFVKRLAGIAA 524 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1040.426.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pages
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1040.426.1 >prot_F-serratus_M_contig1040.426.1 ID=prot_F-serratus_M_contig1040.426.1|Name=mRNA_F-serratus_M_contig1040.426.1|organism=Fucus serratus male|type=polypeptide|length=321bp LSSHWPYFVAGGICAAVSHTAAVPLDVIKTRMQCAEPGKYRGTWDAFVRIback to top mRNA from alignment at F-serratus_M_contig1040:154907..158162- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1040.426.1 ID=mRNA_F-serratus_M_contig1040.426.1|Name=mRNA_F-serratus_M_contig1040.426.1|organism=Fucus serratus male|type=mRNA|length=3256bp|location=Sequence derived from alignment at F-serratus_M_contig1040:154907..158162- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1040:154907..158162- >mRNA_F-serratus_M_contig1040.426.1 ID=mRNA_F-serratus_M_contig1040.426.1|Name=mRNA_F-serratus_M_contig1040.426.1|organism=Fucus serratus male|type=CDS|length=1926bp|location=Sequence derived from alignment at F-serratus_M_contig1040:154907..158162- (Fucus serratus male)back to top |