mRNA_F-serratus_M_contig104.408.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_F-serratus_M_contig104.408.1
Unique Name	mRNA_F-serratus_M_contig104.408.1
Type	mRNA
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))

Homology

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BLAST of mRNA_F-serratus_M_contig104.408.1 vs. uniprot
Match: K0S7I6_THAOC (Histone domain-containing protein n=8 Tax=Bacillariophyta TaxID=2836 RepID=K0S7I6_THAOC)

HSP 1 Score: 253 bits (647), Expect = 7.470e-84
Identity = 138/145 (95.17%), Postives = 141/145 (97.24%), Query Frame = 1

Query:    1 TSYSQSTLPMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 435
            T + Q T+ MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:   65 TFHQQQTVKMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 209

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BLAST of mRNA_F-serratus_M_contig104.408.1 vs. uniprot
Match: W4GZ05_9STRA (Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ05_9STRA)

HSP 1 Score: 249 bits (636), Expect = 3.040e-83
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 1

Query:   28 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 435
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136

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BLAST of mRNA_F-serratus_M_contig104.408.1 vs. uniprot
Match: A0A6V1P6C6_HETAK (Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P6C6_HETAK)

HSP 1 Score: 248 bits (633), Expect = 1.060e-82
Identity = 134/136 (98.53%), Postives = 136/136 (100.00%), Query Frame = 1

Query:   28 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 435
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLR+QGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    7 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRYQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 142

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BLAST of mRNA_F-serratus_M_contig104.408.1 vs. uniprot
Match: A0A1Z5K8H0_FISSO (Histone H3 n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A1Z5K8H0_FISSO)

HSP 1 Score: 248 bits (632), Expect = 1.240e-82
Identity = 134/136 (98.53%), Postives = 135/136 (99.26%), Query Frame = 1

Query:   28 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 435
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136

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BLAST of mRNA_F-serratus_M_contig104.408.1 vs. uniprot
Match: A0A6G0YL43_APHCR (Histone H3 (Fragment) n=16 Tax=cellular organisms TaxID=131567 RepID=A0A6G0YL43_APHCR)

HSP 1 Score: 248 bits (633), Expect = 1.350e-82
Identity = 134/143 (93.71%), Postives = 139/143 (97.20%), Query Frame = 1

Query:    7 YSQSTLPMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 435
            YS+S   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    7 YSESNPAMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 149

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BLAST of mRNA_F-serratus_M_contig104.408.1 vs. uniprot
Match: A0A7S1BJN3_9STRA (Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A7S1BJN3_9STRA)

HSP 1 Score: 248 bits (633), Expect = 1.390e-82
Identity = 134/136 (98.53%), Postives = 136/136 (100.00%), Query Frame = 1

Query:   28 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 435
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFK+DLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:   15 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 150

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BLAST of mRNA_F-serratus_M_contig104.408.1 vs. uniprot
Match: B0WZ61_CULQU (Histone H3.1t n=1 Tax=Culex quinquefasciatus TaxID=7176 RepID=B0WZ61_CULQU)

HSP 1 Score: 247 bits (630), Expect = 4.130e-82
Identity = 132/143 (92.31%), Postives = 139/143 (97.20%), Query Frame = 1

Query:    7 YSQSTLPMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 435
            Y  +++ MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    9 YKSTSIAMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 151

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BLAST of mRNA_F-serratus_M_contig104.408.1 vs. uniprot
Match: D7G4I9_ECTSI (Similar to histone H3.2 n=2 Tax=PX clade TaxID=569578 RepID=D7G4I9_ECTSI)

HSP 1 Score: 246 bits (627), Expect = 7.150e-82
Identity = 134/136 (98.53%), Postives = 135/136 (99.26%), Query Frame = 1

Query:   28 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 435
            MARTKQTARKSTG +APRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    1 MARTKQTARKSTGRQAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136

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BLAST of mRNA_F-serratus_M_contig104.408.1 vs. uniprot
Match: UPI000FFD84FD (histone H3-like n=1 Tax=Vombatus ursinus TaxID=29139 RepID=UPI000FFD84FD)

HSP 1 Score: 247 bits (631), Expect = 7.980e-82
Identity = 134/142 (94.37%), Postives = 139/142 (97.89%), Query Frame = 1

Query:   10 SQSTLPMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 435
            S S+L MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:   40 SSSSLAMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 181

[Close]

BLAST of mRNA_F-serratus_M_contig104.408.1 vs. uniprot
Match: A0A672FQ70_SALFA (Histone H3 n=4 Tax=Percomorphaceae TaxID=1489872 RepID=A0A672FQ70_SALFA)

HSP 1 Score: 246 bits (627), Expect = 9.040e-82
Identity = 133/142 (93.66%), Postives = 138/142 (97.18%), Query Frame = 1

Query:   10 SQSTLPMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 435
            SQ+   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    2 SQTATQMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 143

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig104.408.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig104.408.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
K0S7I6_THAOC	7.470e-84	95.17	Histone domain-containing protein n=8 Tax=Bacillar...	[more]
W4GZ05_9STRA	3.040e-83	99.26	Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ...	[more]
A0A6V1P6C6_HETAK	1.060e-82	98.53	Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829...	[more]
A0A1Z5K8H0_FISSO	1.240e-82	98.53	Histone H3 n=2 Tax=Bacillariophyta TaxID=2836 RepI...	[more]
A0A6G0YL43_APHCR	1.350e-82	93.71	Histone H3 (Fragment) n=16 Tax=cellular organisms ...	[more]
A0A7S1BJN3_9STRA	1.390e-82	98.53	Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A...	[more]
B0WZ61_CULQU	4.130e-82	92.31	Histone H3.1t n=1 Tax=Culex quinquefasciatus TaxID...	[more]
D7G4I9_ECTSI	7.150e-82	98.53	Similar to histone H3.2 n=2 Tax=PX clade TaxID=569...	[more]
UPI000FFD84FD	7.980e-82	94.37	histone H3-like n=1 Tax=Vombatus ursinus TaxID=291...	[more]
A0A672FQ70_SALFA	9.040e-82	93.66	Histone H3 n=4 Tax=Percomorphaceae TaxID=1489872 R...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig104	contig	F-serratus_M_contig104:222288..222725 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-19
OGS1.0 of Fucus serratus male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	256.5
Seed ortholog evalue	6.9e-66
Seed eggNOG ortholog	2880.D7FWI7
KEGG ko	ko:K11253
KEGG Pathway	ko05034,ko05202,ko05322,map05034,map05202,map05322
Hectar predicted targeting category	other localisation
GOs	GO:0000785,GO:0000786,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0031490,GO:0031491,GO:0031492,GO:0031497,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0044815,GO:0044877,GO:0051276,GO:0065003,GO:0065004,GO:0071103,GO:0071824,GO:0071840,GO:0097159,GO:1901363
EggNOG free text desc.	protein heterodimerization activity
EggNOG OGs	COG2036@1,KOG1745@2759
COG Functional cat.	B
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko03036,ko04147
Exons	1
Model size	438
Cds size	411
Stop	1
Start	1

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928851.5429482-UTR-F-serratus_M_contig104:222287..222314	1622928851.5429482-UTR-F-serratus_M_contig104:222287..222314	Fucus serratus male	UTR	F-serratus_M_contig104 222288..222314 +
1690962600.63689-UTR-F-serratus_M_contig104:222287..222314	1690962600.63689-UTR-F-serratus_M_contig104:222287..222314	Fucus serratus male	UTR	F-serratus_M_contig104 222288..222314 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928851.5558949-CDS-F-serratus_M_contig104:222314..222725	1622928851.5558949-CDS-F-serratus_M_contig104:222314..222725	Fucus serratus male	CDS	F-serratus_M_contig104 222315..222725 +
1690962600.6552339-CDS-F-serratus_M_contig104:222314..222725	1690962600.6552339-CDS-F-serratus_M_contig104:222314..222725	Fucus serratus male	CDS	F-serratus_M_contig104 222315..222725 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig104.408.1	prot_F-serratus_M_contig104.408.1	Fucus serratus male	polypeptide	F-serratus_M_contig104 222315..222725 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at F-serratus_M_contig104:222288..222725+
coding sequence from alignment at F-serratus_M_contig104:222288..222725+

protein sequence of mRNA_F-serratus_M_contig104.408.1

>prot_F-serratus_M_contig104.408.1 ID=prot_F-serratus_M_contig104.408.1|Name=mRNA_F-serratus_M_contig104.408.1|organism=Fucus serratus male|type=polypeptide|length=137bp
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALR
EIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAY
LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS*

mRNA from alignment at F-serratus_M_contig104:222288..222725+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_F-serratus_M_contig104.408.1 ID=mRNA_F-serratus_M_contig104.408.1|Name=mRNA_F-serratus_M_contig104.408.1|organism=Fucus serratus male|type=mRNA|length=438bp|location=Sequence derived from alignment at F-serratus_M_contig104:222288..222725+ (Fucus serratus male)
ACAAGCTACTCGCAATCTACCCTTCCAATGGCTCGCACCAAGCAGACCGC
GCGTAAATCTACTGGAGGAAAGGCCCCGCGCAAGCAGCTTGCCACCAAAG
CTGCCCGCAAATCTGCGCCAGCCACTGGTGGTGTGAAGAAGCCCCACCGT
TACAGGCCGGGCACGGTTGCTCTTCGCGAAATCCGGCGTTACCAGAAGTC
CACCGAGCTTCTAATCCGCAAGCTTCCCTTCCAACGTCTAGTGCGCGAGA
TCGCTCAGGATTTCAAAAGCGATCTGCGCTTCCAGGGCTCTGCCGTATTG
GCTCTCCAGGAGGCCGCAGAGGCCTACCTGGTGGGACTGTTTGAAGACAC
CAACCTGTGCGCCATCCACGCGAAGCGTGTCACTATCATGCCCAAGGACA
TCCAGCTGGCCAGGCGCATCCGTGGAGAGCGCTCGTAA

Coding sequence (CDS) from alignment at F-serratus_M_contig104:222288..222725+

>mRNA_F-serratus_M_contig104.408.1 ID=mRNA_F-serratus_M_contig104.408.1|Name=mRNA_F-serratus_M_contig104.408.1|organism=Fucus serratus male|type=CDS|length=822bp|location=Sequence derived from alignment at F-serratus_M_contig104:222288..222725+ (Fucus serratus male)
ATGGCTCGCACCAAGCAGACCGCGCGTAAATCTACTGGAGGAAAGGCCCC
GCGCAAGCAGCTTGCCACCAAAGCTGCCCGCAAATCTGCGCCAGCCACTG
GTGGTGTGAAGAAGCCCCACCGTTACAGGCCGGGCACGGTTGCTCTTCGC
GAAATCCGGCGTTACCAGAAGTCCACCGAGCTTCTAATCCGCAAGCTTCC
CTTCCAACGTCTAGTGCGCGAGATCGCTCAGGATTTCAAAAGCGATCTGC
GCTTCCAGGGCTCTGCCGTATTGGCTCTCCAGGAGGCCGCAGAGGCCTAC
CTGGTGGGACTGTTTGAAGACACCAACCTGTGCGCCATCCACGCGAAGCG
TGTCACTATCATGCCCAAGGACATCCAGCTGGCCAGGCGCATCCGTGGAG
AGCGCTCGTAAATGGCTCGCACCAAGCAGACCGCGCGTAAATCTACTGGA
GGAAAGGCCCCGCGCAAGCAGCTTGCCACCAAAGCTGCCCGCAAATCTGC
GCCAGCCACTGGTGGTGTGAAGAAGCCCCACCGTTACAGGCCGGGCACGG
TTGCTCTTCGCGAAATCCGGCGTTACCAGAAGTCCACCGAGCTTCTAATC
CGCAAGCTTCCCTTCCAACGTCTAGTGCGCGAGATCGCTCAGGATTTCAA
AAGCGATCTGCGCTTCCAGGGCTCTGCCGTATTGGCTCTCCAGGAGGCCG
CAGAGGCCTACCTGGTGGGACTGTTTGAAGACACCAACCTGTGCGCCATC
CACGCGAAGCGTGTCACTATCATGCCCAAGGACATCCAGCTGGCCAGGCG
CATCCGTGGAGAGCGCTCGTAA