mRNA_F-serratus_M_contig1039.398.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1039.398.1
Unique NamemRNA_F-serratus_M_contig1039.398.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1039.398.1 vs. uniprot
Match: A0A6H5KED8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KED8_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 2.120e-6
Identity = 38/94 (40.43%), Postives = 54/94 (57.45%), Query Frame = 1 
Query:   25 ALRQAHLP---IREGGLGLTSSSSIKGAAYIGCHALVLGRVVAASARGNLPSLLERLPERPMASALIEELKTVATEAKRSQIEEAVGSSWAALA 297
            A  Q HLP   +REGGLG+TS+  I+ +A++   ALV  + V AS    +   L RL + P   ALI+ LK +     + ++E+AVG S A LA
Sbjct:  140 ARAQVHLPXLPMREGGLGITSNVLIRESAFVAGQALVFSKSVQASTGYTVEQCLPRLAQLPTGLALIDSLKKLEEIITKDKLEKAVGQSRAKLA 233
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BLAST of mRNA_F-serratus_M_contig1039.398.1 vs. uniprot
Match: A0A6H5JLD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLD7_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 1.390e-5
Identity = 30/68 (44.12%), Postives = 41/68 (60.29%), Query Frame = 1 
Query:   25 ALRQAHLPIREGGLGLTSSSSIKGAAYIGCHALVLGRVVAASARGNLPSLLERLPERPMASALIEELK 228
            A  Q HLP+REGGLG+TS+  I+ +A++   ALV  + V AS    +   L RL + P   ALI+ LK
Sbjct:  210 ARAQVHLPMREGGLGITSNVLIRESAFVAGQALVFSKSVQASTGYTVEQCLPRLAQLPTGLALIDSLK 277
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1039.398.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5KED8_9PHAE2.120e-640.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLD7_9PHAE1.390e-544.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1039contigF-serratus_M_contig1039:35127..35431 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size305
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928849.707006-CDS-F-serratus_M_contig1039:35126..354291622928849.707006-CDS-F-serratus_M_contig1039:35126..35429Fucus serratus maleCDSF-serratus_M_contig1039 35127..35429 +
1690962599.8016508-CDS-F-serratus_M_contig1039:35126..354291690962599.8016508-CDS-F-serratus_M_contig1039:35126..35429Fucus serratus maleCDSF-serratus_M_contig1039 35127..35429 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1039.398.1prot_F-serratus_M_contig1039.398.1Fucus serratus malepolypeptideF-serratus_M_contig1039 35127..35429 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1039.398.1

>prot_F-serratus_M_contig1039.398.1 ID=prot_F-serratus_M_contig1039.398.1|Name=mRNA_F-serratus_M_contig1039.398.1|organism=Fucus serratus male|type=polypeptide|length=101bp
NQTYLGHEALRQAHLPIREGGLGLTSSSSIKGAAYIGCHALVLGRVVAAS
ARGNLPSLLERLPERPMASALIEELKTVATEAKRSQIEEAVGSSWAALAA
E
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mRNA from alignment at F-serratus_M_contig1039:35127..35431+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1039.398.1 ID=mRNA_F-serratus_M_contig1039.398.1|Name=mRNA_F-serratus_M_contig1039.398.1|organism=Fucus serratus male|type=mRNA|length=305bp|location=Sequence derived from alignment at F-serratus_M_contig1039:35127..35431+ (Fucus serratus male)
AATCAGACCTACCTGGGACACGAGGCCCTACGGCAGGCCCACCTGCCAAT
TCGAGAAGGCGGCCTTGGGCTCACCAGCAGTAGCTCCATCAAAGGCGCAG
CATATATCGGATGTCACGCCCTGGTCCTGGGGCGGGTCGTCGCTGCCTCC
GCCCGGGGGAACCTTCCATCCCTTCTTGAACGGCTGCCTGAGCGACCCAT
GGCGTCAGCGCTTATTGAAGAGCTAAAGACCGTGGCTACCGAAGCCAAGA
GAAGCCAGATAGAGGAGGCAGTGGGCAGTTCGTGGGCAGCCCTAGCGGCG
GAAGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1039:35127..35431+

>mRNA_F-serratus_M_contig1039.398.1 ID=mRNA_F-serratus_M_contig1039.398.1|Name=mRNA_F-serratus_M_contig1039.398.1|organism=Fucus serratus male|type=CDS|length=606bp|location=Sequence derived from alignment at F-serratus_M_contig1039:35127..35431+ (Fucus serratus male)
AATCAGACCTACCTGGGACACGAGGCCCTACGGCAGGCCCACCTGCCAAT
TCGAGAAGGCGGCCTTGGGCTCACCAGCAGTAGCTCCATCAAAGGCGCAG
CATATATCGGATGTCACGCCCTGGTCCTGGGGCGGGTCGTCGCTGCCTCC
GCCCGGGGGAACCTTCCATCCCTTCTTGAACGGCTGCCTGAGCGACCCAT
GGCGTCAGCGCTTATTGAAGAGCTAAAGACCGTGGCTACCGAAGCCAAGA
GAAGCCAGATAGAGGAGGCAGTGGGCAGTTCGTGGGCAGCCCTAGCGGCG
GAAAATCAGACCTACCTGGGACACGAGGCCCTACGGCAGGCCCACCTGCC
AATTCGAGAAGGCGGCCTTGGGCTCACCAGCAGTAGCTCCATCAAAGGCG
CAGCATATATCGGATGTCACGCCCTGGTCCTGGGGCGGGTCGTCGCTGCC
TCCGCCCGGGGGAACCTTCCATCCCTTCTTGAACGGCTGCCTGAGCGACC
CATGGCGTCAGCGCTTATTGAAGAGCTAAAGACCGTGGCTACCGAAGCCA
AGAGAAGCCAGATAGAGGAGGCAGTGGGCAGTTCGTGGGCAGCCCTAGCG
GCGGAA
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