mRNA_F-serratus_M_contig1039.398.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1039.398.1
Unique NamemRNA_F-serratus_M_contig1039.398.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1039.398.1 vs. uniprot
Match: A0A6P0N5L4_9CYAN (Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0N5L4_9CYAN)

HSP 1 Score: 73.9 bits (180), Expect = 3.250e-13
Identity = 45/90 (50.00%), Postives = 57/90 (63.33%), Query Frame = 1 
Query:   28 LRQAHLPIREGGLGLTSSSSIKGAAYIGCHALVLGRVVAASARGNLPSLLERLPERPMASALIEELKTVATEAKRSQIEEAVGSSWAALA 297
            +RQA LP+REGGLG+ S+  I G A+IG  ALVL R + A+   NL   L  L E P A AL  EL+ +   A  S+I E VG+SWAA+A
Sbjct: 1578 IRQARLPVREGGLGIPSTVDISGPAFIGGQALVLARALVATNATNLSHELAVLAETPYAQALTGELRKLPKYASGSEITEMVGTSWAAIA 1667
[Close]
BLAST of mRNA_F-serratus_M_contig1039.398.1 vs. uniprot
Match: A0A6H5KDI2_9PHAE (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDI2_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 2.140e-10
Identity = 40/91 (43.96%), Postives = 56/91 (61.54%), Query Frame = 1 
Query:   25 ALRQAHLPIREGGLGLTSSSSIKGAAYIGCHALVLGRVVAASARGNLPSLLERLPERPMASALIEELKTVATEAKRSQIEEAVGSSWAALA 297
            A  Q HLP+REGGLG+TS+  I+ +A++   ALV  + V AS    +   L RL + P   ALI+ LK +A    + ++E+AVG SWA LA
Sbjct:  210 ARAQVHLPMREGGLGITSNVLIRESAFVAGQALVFSKSVQASTGYTVEQCLPRLAQLPTGLALIDSLKKLAEIIIQDKLEKAVGQSWAKLA 300
[Close]
BLAST of mRNA_F-serratus_M_contig1039.398.1 vs. uniprot
Match: A0A6H5KSR9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSR9_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 2.420e-10
Identity = 39/91 (42.86%), Postives = 55/91 (60.44%), Query Frame = 1 
Query:   25 ALRQAHLPIREGGLGLTSSSSIKGAAYIGCHALVLGRVVAASARGNLPSLLERLPERPMASALIEELKTVATEAKRSQIEEAVGSSWAALA 297
            A  Q HLP+REGGLG+TS+  I+ +A++   ALV  + V AS    +   L RL + P   ALI+ LK +     + ++E+AVG SWA LA
Sbjct:   43 ARAQVHLPMREGGLGITSNVLIRESAFVAGQALVFSKSVQASTGYTVEQCLPRLAQLPTGLALIDSLKKLEEIITKDKLEKAVGQSWAKLA 133
[Close]
BLAST of mRNA_F-serratus_M_contig1039.398.1 vs. uniprot
Match: A0A6H5JCM0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCM0_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 4.060e-10
Identity = 39/91 (42.86%), Postives = 55/91 (60.44%), Query Frame = 1 
Query:   25 ALRQAHLPIREGGLGLTSSSSIKGAAYIGCHALVLGRVVAASARGNLPSLLERLPERPMASALIEELKTVATEAKRSQIEEAVGSSWAALA 297
            A  Q HLP+REGGLG+TS+  I+ +A++   ALV  + V AS    +   L RL + P   ALI+ LK +     + ++E+AVG SWA LA
Sbjct:  544 ARAQVHLPMREGGLGITSNVLIRESAFVAGQALVFSKSVQASTGYTVEQCLPRLAQLPTGLALIDSLKKLEEIITKDKLEKAVGQSWAKLA 634
[Close]
BLAST of mRNA_F-serratus_M_contig1039.398.1 vs. uniprot
Match: A0A6H5KKJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKJ7_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 4.060e-10
Identity = 39/91 (42.86%), Postives = 55/91 (60.44%), Query Frame = 1 
Query:   25 ALRQAHLPIREGGLGLTSSSSIKGAAYIGCHALVLGRVVAASARGNLPSLLERLPERPMASALIEELKTVATEAKRSQIEEAVGSSWAALA 297
            A  Q HLP+REGGLG+TS+  I+ +A++   ALV  + V AS    +   L RL + P   ALI+ LK +     + ++E+AVG SWA LA
Sbjct:  210 ARAQVHLPMREGGLGITSNVLIRESAFVAGQALVFSKSVQASTGYTVEQCLPRLAQLPTGLALIDSLKKLEEIITKDKLEKAVGQSWAKLA 300
[Close]
BLAST of mRNA_F-serratus_M_contig1039.398.1 vs. uniprot
Match: A0A6H5LN63_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN63_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 4.110e-10
Identity = 39/91 (42.86%), Postives = 55/91 (60.44%), Query Frame = 1 
Query:   25 ALRQAHLPIREGGLGLTSSSSIKGAAYIGCHALVLGRVVAASARGNLPSLLERLPERPMASALIEELKTVATEAKRSQIEEAVGSSWAALA 297
            A  Q HLP+REGGLG+TS+  I+ +A++   ALV  + V AS    +   L RL + P   ALI+ LK +     + ++E+AVG SWA LA
Sbjct:  544 ARAQVHLPMREGGLGITSNVLIRESAFVAGQALVFSKSVQASTGYTVEQCLPRLAQLPTGLALIDSLKKLEEIITKDKLEKAVGQSWAKLA 634
[Close]
BLAST of mRNA_F-serratus_M_contig1039.398.1 vs. uniprot
Match: A0A6H5K1H0_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H0_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 4.130e-10
Identity = 39/91 (42.86%), Postives = 55/91 (60.44%), Query Frame = 1 
Query:   25 ALRQAHLPIREGGLGLTSSSSIKGAAYIGCHALVLGRVVAASARGNLPSLLERLPERPMASALIEELKTVATEAKRSQIEEAVGSSWAALA 297
            A  Q HLP+REGGLG+TS+  I+ +A++   ALV  + V AS    +   L RL + P   ALI+ LK +     + ++E+AVG SWA LA
Sbjct:  392 ARAQVHLPMREGGLGITSNVLIRESAFVAGQALVFSKSVQASTGYTVEQCLPRLAQLPTGLALIDSLKKLEEIITKDKLEKAVGQSWAKLA 482
[Close]
BLAST of mRNA_F-serratus_M_contig1039.398.1 vs. uniprot
Match: A0A6H5L2W9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2W9_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 4.160e-10
Identity = 39/91 (42.86%), Postives = 55/91 (60.44%), Query Frame = 1 
Query:   25 ALRQAHLPIREGGLGLTSSSSIKGAAYIGCHALVLGRVVAASARGNLPSLLERLPERPMASALIEELKTVATEAKRSQIEEAVGSSWAALA 297
            A  Q HLP+REGGLG+TS+  I+ +A++   ALV  + V AS    +   L RL + P   ALI+ LK +     + ++E+AVG SWA LA
Sbjct:  177 ARAQVHLPMREGGLGITSNVLIRESAFVAGQALVFSKSVQASTGYTVEQCLPRLAQLPTGLALIDSLKKLEEIITKDKLEKAVGQSWAKLA 267
[Close]
BLAST of mRNA_F-serratus_M_contig1039.398.1 vs. uniprot
Match: A0A6H5L7H4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7H4_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 8.170e-10
Identity = 38/90 (42.22%), Postives = 52/90 (57.78%), Query Frame = 1 
Query:   25 ALRQAHLPIREGGLGLTSSSSIKGAAYIGCHALVLGRVVAASARGNLPSLLERLPERPMASALIEELKTVATEAKRSQIEEAVGSSWAAL 294
            A  Q HLPIREGGLG+TSS  I+ +A++   ALV  + V AS    +   L +L + P   ALI+ LK +     + ++E AVG SW  L
Sbjct:   41 ARAQVHLPIREGGLGITSSVLIRESAFVAGQALVFSKSVQASTGLTIEQCLPQLAQLPTGLALIDSLKKLKEIITKDKLERAVGQSWTKL 130
[Close]
BLAST of mRNA_F-serratus_M_contig1039.398.1 vs. uniprot
Match: A0A6H5KSY9_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSY9_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 2.520e-9
Identity = 38/90 (42.22%), Postives = 52/90 (57.78%), Query Frame = 1 
Query:   25 ALRQAHLPIREGGLGLTSSSSIKGAAYIGCHALVLGRVVAASARGNLPSLLERLPERPMASALIEELKTVATEAKRSQIEEAVGSSWAAL 294
            A  Q HLPIREGGLG+TSS  I+ +A++   ALV  + V AS    +   L +L + P   ALI+ LK +     + ++E AVG SW  L
Sbjct:  391 ARAQVHLPIREGGLGITSSVLIRESAFVAGQALVFSKSVQASTGLTIEQCLPQLAQLPTGLALIDSLKKLKEIITKDKLERAVGQSWTKL 480
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1039.398.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6P0N5L4_9CYAN3.250e-1350.00Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 Ta... [more]
A0A6H5KDI2_9PHAE2.140e-1043.96Uncharacterized protein (Fragment) n=2 Tax=Ectocar... [more]
A0A6H5KSR9_9PHAE2.420e-1042.86Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCM0_9PHAE4.060e-1042.86Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KKJ7_9PHAE4.060e-1042.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LN63_9PHAE4.110e-1042.86Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K1H0_9PHAE4.130e-1042.86Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L2W9_9PHAE4.160e-1042.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L7H4_9PHAE8.170e-1042.22Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KSY9_9PHAE2.520e-942.22Reverse transcriptase domain-containing protein (F... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1039contigF-serratus_M_contig1039:35127..35431 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size305
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928849.707006-CDS-F-serratus_M_contig1039:35126..354291622928849.707006-CDS-F-serratus_M_contig1039:35126..35429Fucus serratus maleCDSF-serratus_M_contig1039 35127..35429 +
1690962599.8016508-CDS-F-serratus_M_contig1039:35126..354291690962599.8016508-CDS-F-serratus_M_contig1039:35126..35429Fucus serratus maleCDSF-serratus_M_contig1039 35127..35429 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1039.398.1prot_F-serratus_M_contig1039.398.1Fucus serratus malepolypeptideF-serratus_M_contig1039 35127..35429 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1039.398.1

>prot_F-serratus_M_contig1039.398.1 ID=prot_F-serratus_M_contig1039.398.1|Name=mRNA_F-serratus_M_contig1039.398.1|organism=Fucus serratus male|type=polypeptide|length=101bp
NQTYLGHEALRQAHLPIREGGLGLTSSSSIKGAAYIGCHALVLGRVVAAS
ARGNLPSLLERLPERPMASALIEELKTVATEAKRSQIEEAVGSSWAALAA
E
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mRNA from alignment at F-serratus_M_contig1039:35127..35431+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1039.398.1 ID=mRNA_F-serratus_M_contig1039.398.1|Name=mRNA_F-serratus_M_contig1039.398.1|organism=Fucus serratus male|type=mRNA|length=305bp|location=Sequence derived from alignment at F-serratus_M_contig1039:35127..35431+ (Fucus serratus male)
AATCAGACCTACCTGGGACACGAGGCCCTACGGCAGGCCCACCTGCCAAT
TCGAGAAGGCGGCCTTGGGCTCACCAGCAGTAGCTCCATCAAAGGCGCAG
CATATATCGGATGTCACGCCCTGGTCCTGGGGCGGGTCGTCGCTGCCTCC
GCCCGGGGGAACCTTCCATCCCTTCTTGAACGGCTGCCTGAGCGACCCAT
GGCGTCAGCGCTTATTGAAGAGCTAAAGACCGTGGCTACCGAAGCCAAGA
GAAGCCAGATAGAGGAGGCAGTGGGCAGTTCGTGGGCAGCCCTAGCGGCG
GAAGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1039:35127..35431+

>mRNA_F-serratus_M_contig1039.398.1 ID=mRNA_F-serratus_M_contig1039.398.1|Name=mRNA_F-serratus_M_contig1039.398.1|organism=Fucus serratus male|type=CDS|length=606bp|location=Sequence derived from alignment at F-serratus_M_contig1039:35127..35431+ (Fucus serratus male)
AATCAGACCTACCTGGGACACGAGGCCCTACGGCAGGCCCACCTGCCAAT
TCGAGAAGGCGGCCTTGGGCTCACCAGCAGTAGCTCCATCAAAGGCGCAG
CATATATCGGATGTCACGCCCTGGTCCTGGGGCGGGTCGTCGCTGCCTCC
GCCCGGGGGAACCTTCCATCCCTTCTTGAACGGCTGCCTGAGCGACCCAT
GGCGTCAGCGCTTATTGAAGAGCTAAAGACCGTGGCTACCGAAGCCAAGA
GAAGCCAGATAGAGGAGGCAGTGGGCAGTTCGTGGGCAGCCCTAGCGGCG
GAAAATCAGACCTACCTGGGACACGAGGCCCTACGGCAGGCCCACCTGCC
AATTCGAGAAGGCGGCCTTGGGCTCACCAGCAGTAGCTCCATCAAAGGCG
CAGCATATATCGGATGTCACGCCCTGGTCCTGGGGCGGGTCGTCGCTGCC
TCCGCCCGGGGGAACCTTCCATCCCTTCTTGAACGGCTGCCTGAGCGACC
CATGGCGTCAGCGCTTATTGAAGAGCTAAAGACCGTGGCTACCGAAGCCA
AGAGAAGCCAGATAGAGGAGGCAGTGGGCAGTTCGTGGGCAGCCCTAGCG
GCGGAA
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