mRNA_F-serratus_M_contig1038.396.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1038.396.1
Unique NamemRNA_F-serratus_M_contig1038.396.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1038.396.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1038contigF-serratus_M_contig1038:303670..305248 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1098
Cds size636
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1038.396.1prot_F-serratus_M_contig1038.396.1Fucus serratus malepolypeptideF-serratus_M_contig1038 303712..304347 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928849.514613-UTR-F-serratus_M_contig1038:303669..3037111622928849.514613-UTR-F-serratus_M_contig1038:303669..303711Fucus serratus maleUTRF-serratus_M_contig1038 303670..303711 +
1690962599.7598903-UTR-F-serratus_M_contig1038:303669..3037111690962599.7598903-UTR-F-serratus_M_contig1038:303669..303711Fucus serratus maleUTRF-serratus_M_contig1038 303670..303711 +
1622928849.565757-UTR-F-serratus_M_contig1038:304347..3043511622928849.565757-UTR-F-serratus_M_contig1038:304347..304351Fucus serratus maleUTRF-serratus_M_contig1038 304348..304351 +
1690962599.775578-UTR-F-serratus_M_contig1038:304347..3043511690962599.775578-UTR-F-serratus_M_contig1038:304347..304351Fucus serratus maleUTRF-serratus_M_contig1038 304348..304351 +
1622928849.5807173-UTR-F-serratus_M_contig1038:304832..3052481622928849.5807173-UTR-F-serratus_M_contig1038:304832..305248Fucus serratus maleUTRF-serratus_M_contig1038 304833..305248 +
1690962599.7837484-UTR-F-serratus_M_contig1038:304832..3052481690962599.7837484-UTR-F-serratus_M_contig1038:304832..305248Fucus serratus maleUTRF-serratus_M_contig1038 304833..305248 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928849.5436792-CDS-F-serratus_M_contig1038:303711..3043471622928849.5436792-CDS-F-serratus_M_contig1038:303711..304347Fucus serratus maleCDSF-serratus_M_contig1038 303712..304347 +
1690962599.7680352-CDS-F-serratus_M_contig1038:303711..3043471690962599.7680352-CDS-F-serratus_M_contig1038:303711..304347Fucus serratus maleCDSF-serratus_M_contig1038 303712..304347 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1038.396.1

>prot_F-serratus_M_contig1038.396.1 ID=prot_F-serratus_M_contig1038.396.1|Name=mRNA_F-serratus_M_contig1038.396.1|organism=Fucus serratus male|type=polypeptide|length=212bp
MVNVCRRKCITEGFAKGPVFGVAGTKTAEYRAKHAQDGMINVSNMKCRTQ
SCGKHSTFGVPGTKTGEYCTQHAPNGMVDACSRKCITGGCDKEPSFGVAN
TQTAEHCAQHTIRKCGVERYREGEVDPHHSGKETIANILQKSVKRQTFYP
PSEGGQGSRKRVRYPDITSTASIQSISRESAGGAGTMQDTDGQKSPFKRN
SSLKAEVQLSL*
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mRNA from alignment at F-serratus_M_contig1038:303670..305248+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1038.396.1 ID=mRNA_F-serratus_M_contig1038.396.1|Name=mRNA_F-serratus_M_contig1038.396.1|organism=Fucus serratus male|type=mRNA|length=1579bp|location=Sequence derived from alignment at F-serratus_M_contig1038:303670..305248+ (Fucus serratus male)
ACAAAAACGCTCGAGTACTGTGCACAGCACGCCCCGGATGTAATGGTCAA
CGTCTGCAGGAGGAAATGCATAACTGAAGGCTTCGCAAAGGGGCCGGTGT
TTGGCGTCGCAGGTACGAAAACTGCCGAGTACCGTGCAAAGCACGCACAG
GACGGAATGATCAACGTCTCCAATATGAAGTGCAGAACCCAAAGCTGCGG
CAAGCATTCGACGTTTGGAGTGCCAGGTACGAAAACCGGGGAGTACTGCA
CACAGCACGCCCCTAACGGAATGGTCGACGCCTGCAGCAGAAAATGCATA
ACAGGGGGCTGCGATAAGGAGCCGTCGTTTGGAGTGGCCAACACACAAAC
GGCGGAGCACTGTGCGCAGCACACCATACGGAAATGCGGTGTCGAAAGAT
ACAGGGAGGGAGAGGTTGACCCACACCATTCCGGGAAGGAAACTATTGCG
AACATACTTCAGAAGAGCGTGAAACGTCAAACCTTTTACCCTCCGTCGGA
AGGTGGCCAGGGCTCTCGTAAGCGAGTACGTTACCCAGATATTACGTCTA
CGGCCTCGATACAATCTATCTCACGAGAGTCGGCTGGAGGAGCAGGGACT
ATGCAGGATACTGACGGGCAAAAATCTCCCTTTAAACGAAATTCTTCCTT
GAAGGCGGAGGTGCAGCTCTCCTTGTAGCCAGGTACACTCAACGTGACCT
CAATCACTATGCATGTAGTATTGATATTATATCCTTACTCTTGTTTCCCT
GCCTGGGTTGTATTCCGCTTCTTATGGTCTGTTTTTATTTCGTGGCCTGC
TGACGAGGATGTTTTTCTTGCCCTACGCGTATCATGTGGTTGTCTTCTAC
TTGTTTCTCCTGTTTTTGCTTTGTTTGTGTTTTTGTTCTTTATTTATTTG
TTTTGTCTCTCCTGTGTCCCTTCCTACCGACGATGCCCTTCGTTACTTAC
TGTCTGTTGTCTTCTGTCTGCTTTTCCTGCtTTTTTCTTCTGAATGTTTT
CCCAGTTTGACTTGGTTTGGCTCCGTCTGTCTTGTGACCACGACTGGATT
CGTAGTTCAACTCATGGGCACCTCTTCCTCTTGAAACCTCAAGATCTTGC
AGCTGCACCCATTGCCTTACCCTCAAGGCCTTGTTCTCCCGTTCCCCTGT
CTTTCGAACTCAGGTACTGTGATCAAGAGCGTGGTCATCATTTTTATCCA
ATAGCTGCCGAGATGCTGATGGGTTTGGTGAGGGTCCTATTGTGCGTACC
TCCGGAACTTTATCGTTTCACTTGATATATTATGCATGGAAGAGTGTTCC
ATCCTTGGACTGCCGGTACTGTACTTTAGAGGTCCTGATGATGAAGCGAC
AAAGAAGAACGGGTAAGTAGCACCGGACCTCTTTGGTCAACCCGATTCCG
ATACCGAGGGGGGCAGCGTTTGTGTGCATACTTGTCTGGCAATTTTATCA
GCAGGCAACTATGCTGTCTGAAGTTCAGCTAAGAAATAATGGTTGACTGA
TGGGGCGAAAAAATGGTCTCGCGATAGGGACTCAATGTATTGCAATTTTC
ACTGACCTTATAACTCGGTACTATTTCTG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1038:303670..305248+

>mRNA_F-serratus_M_contig1038.396.1 ID=mRNA_F-serratus_M_contig1038.396.1|Name=mRNA_F-serratus_M_contig1038.396.1|organism=Fucus serratus male|type=CDS|length=1272bp|location=Sequence derived from alignment at F-serratus_M_contig1038:303670..305248+ (Fucus serratus male)
ATGGTCAACGTCTGCAGGAGGAAATGCATAACTGAAGGCTTCGCAAAGGG
GCCGGTGTTTGGCGTCGCAGGTACGAAAACTGCCGAGTACCGTGCAAAGC
ACGCACAGGACGGAATGATCAACGTCTCCAATATGAAGTGCAGAACCCAA
AGCTGCGGCAAGCATTCGACGTTTGGAGTGCCAGGTACGAAAACCGGGGA
GTACTGCACACAGCACGCCCCTAACGGAATGGTCGACGCCTGCAGCAGAA
AATGCATAACAGGGGGCTGCGATAAGGAGCCGTCGTTTGGAGTGGCCAAC
ACACAAACGGCGGAGCACTGTGCGCAGCACACCATACGGAAATGCGGTGT
CGAAAGATACAGGGAGGGAGAGGTTGACCCACACCATTCCGGGAAGGAAA
CTATTGCGAACATACTTCAGAAGAGCGTGAAACGTCAAACCTTTTACCCT
CCGTCGGAAGGTGGCCAGGGCTCTCGTAAGCGAGTACGTTACCCAGATAT
TACGTCTACGGCCTCGATACAATCTATCTCACGAGAGTCGGCTGGAGGAG
CAGGGACTATGCAGGATACTGACGGGCAAAAATCTCCCTTTAAACGAAAT
TCTTCCTTGAAGGCGGAGGTGCAGCTCTCCTTGTAGATGGTCAACGTCTG
CAGGAGGAAATGCATAACTGAAGGCTTCGCAAAGGGGCCGGTGTTTGGCG
TCGCAGGTACGAAAACTGCCGAGTACCGTGCAAAGCACGCACAGGACGGA
ATGATCAACGTCTCCAATATGAAGTGCAGAACCCAAAGCTGCGGCAAGCA
TTCGACGTTTGGAGTGCCAGGTACGAAAACCGGGGAGTACTGCACACAGC
ACGCCCCTAACGGAATGGTCGACGCCTGCAGCAGAAAATGCATAACAGGG
GGCTGCGATAAGGAGCCGTCGTTTGGAGTGGCCAACACACAAACGGCGGA
GCACTGTGCGCAGCACACCATACGGAAATGCGGTGTCGAAAGATACAGGG
AGGGAGAGGTTGACCCACACCATTCCGGGAAGGAAACTATTGCGAACATA
CTTCAGAAGAGCGTGAAACGTCAAACCTTTTACCCTCCGTCGGAAGGTGG
CCAGGGCTCTCGTAAGCGAGTACGTTACCCAGATATTACGTCTACGGCCT
CGATACAATCTATCTCACGAGAGTCGGCTGGAGGAGCAGGGACTATGCAG
GATACTGACGGGCAAAAATCTCCCTTTAAACGAAATTCTTCCTTGAAGGC
GGAGGTGCAGCTCTCCTTGTAG
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