mRNA_F-serratus_M_contig1037.387.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1037.387.1
Unique NamemRNA_F-serratus_M_contig1037.387.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig1037.387.1 vs. uniprot
Match: F2UIG5_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UIG5_SALR5)

HSP 1 Score: 54.3 bits (129), Expect = 6.960e-5
Identity = 24/59 (40.68%), Postives = 35/59 (59.32%), Query Frame = 1 
Query:   73 AVGVNVAGWLALFYGNSVHGGRSLAMVDNPFRALLAAPIFVLCGVLFAFGYRPELLKRV 249
            A  + +A W    YG+  +  R+ A +DN F++   AP FV   ++F FGYRPEL KR+
Sbjct:  120 ATAIQIACWSMQIYGHYAYEKRAPAFLDNIFQSFYLAPYFVFLEIMFLFGYRPELAKRI 178
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1037.387.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
F2UIG5_SALR56.960e-540.68Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1037contigF-serratus_M_contig1037:34997..36795 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.0
Seed ortholog evalue5.1e-12
Seed eggNOG ortholog2880.D7FJ56
Hectar predicted targeting categorysignal peptide
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006629,GO:0006643,GO:0006665,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016042,GO:0030149,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046466,GO:0046519,GO:0046521,GO:0071704,GO:0097164,GO:0098827,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.sphingoid catabolic process
EggNOG OGsCOG4539@1,KOG3292@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1363
Cds size279
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1037.387.1prot_F-serratus_M_contig1037.387.1Fucus serratus malepolypeptideF-serratus_M_contig1037 35042..35756 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928847.9431434-UTR-F-serratus_M_contig1037:34996..350411622928847.9431434-UTR-F-serratus_M_contig1037:34996..35041Fucus serratus maleUTRF-serratus_M_contig1037 34997..35041 +
1690962599.0828621-UTR-F-serratus_M_contig1037:34996..350411690962599.0828621-UTR-F-serratus_M_contig1037:34996..35041Fucus serratus maleUTRF-serratus_M_contig1037 34997..35041 +
1622928847.976906-UTR-F-serratus_M_contig1037:35756..367951622928847.976906-UTR-F-serratus_M_contig1037:35756..36795Fucus serratus maleUTRF-serratus_M_contig1037 35757..36795 +
1690962599.1310425-UTR-F-serratus_M_contig1037:35756..367951690962599.1310425-UTR-F-serratus_M_contig1037:35756..36795Fucus serratus maleUTRF-serratus_M_contig1037 35757..36795 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928847.9555988-CDS-F-serratus_M_contig1037:35041..351641622928847.9555988-CDS-F-serratus_M_contig1037:35041..35164Fucus serratus maleCDSF-serratus_M_contig1037 35042..35164 +
1690962599.09895-CDS-F-serratus_M_contig1037:35041..351641690962599.09895-CDS-F-serratus_M_contig1037:35041..35164Fucus serratus maleCDSF-serratus_M_contig1037 35042..35164 +
1622928847.9660513-CDS-F-serratus_M_contig1037:35600..357561622928847.9660513-CDS-F-serratus_M_contig1037:35600..35756Fucus serratus maleCDSF-serratus_M_contig1037 35601..35756 +
1690962599.1164684-CDS-F-serratus_M_contig1037:35600..357561690962599.1164684-CDS-F-serratus_M_contig1037:35600..35756Fucus serratus maleCDSF-serratus_M_contig1037 35601..35756 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1037.387.1

>prot_F-serratus_M_contig1037.387.1 ID=prot_F-serratus_M_contig1037.387.1|Name=mRNA_F-serratus_M_contig1037.387.1|organism=Fucus serratus male|type=polypeptide|length=93bp
MAYGGSAALAVGVNVAGWLALFYGNSVHGGRSLAMVDNPFRALLAAPIFV
LCGVLFAFGYRPELLKRVKARAGLKNKRFKVASTLKKKLKRK*
back to top

mRNA from alignment at F-serratus_M_contig1037:34997..36795+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1037.387.1 ID=mRNA_F-serratus_M_contig1037.387.1|Name=mRNA_F-serratus_M_contig1037.387.1|organism=Fucus serratus male|type=mRNA|length=1799bp|location=Sequence derived from alignment at F-serratus_M_contig1037:34997..36795+ (Fucus serratus male)
GCGTCGCTTCTGGTGATTGCTTCGTACGTCACGGCCAACTTGTGGATGGC
CTACGGCGGCTCCGCAGCGCTTGCTGTGGGCGTGAATGTGGCGGGATGGC
TCGCACTATTTTACGGAAATTCCGTTCACGGGGGCAGGTCACTTGCGATG
GTTGACAATCCATTCCGGGTGAGAGTTTTTGGAAACGACGAGAACATCAT
CCCTGTAGTATCCTCTTTAAAATATCGATCAGACCGCAGTACGCCCTTTG
TGAAGACGGCGGTGGACTAGTGTAGTTCTTAAGCATCTCCATGTACCGTT
GTTCCCTACTGGCATTGCAGGCGCCTGTGTGGTTATGACCCCCAAGCCTC
TACATTCAGCCCCCCCCCGCGCGCAAGGATAGTCAGTTTTTTTTCATTTC
AACGTCGCATGTTGGCCTCCGCTAGAGCTACGCGTCTTTTTTTTAGAAGG
CGTTGAAACTACCCGTAAATCTTACGTTGATTTCCTTCATCTTTCACCGA
TTAAATACGTCCCGCTCGGTAGGGCGCATATTGTCTTTTGAAGATACCCG
CTTGATTGTCCATATCTGTTCCCACGCTACTCTCGCCCGACGTTATTGGA
ACAGGCGTTGCTAGCGGCCCCTATATTCGTACTATGTGGGGTCTTGTTCG
CGTTTGGCTACAGGCCGGAGTTGCTCAAACGAGTCAAAGCCCGGGCTGGC
CTAAAGAACAAAAGATTCAAGGTTGCCTCCACCCTAAAAAAAAAATTGAA
GAGGAAGTAAGAGTGGCGCTGGAGCGGGAAGATCATTCGCCCGATGATGC
AAATAATTCTTCGATGCTCGGTGTTTGATGTTTGTTGATGCTTGCAAAAT
GCCTAACGTCAAGTGGCGAGTACTTCGTTTGACGAGGAGATTCCTTCACG
CTTACCTCCTGCGCTTTGTTCGAGGGGTCGCGTAGATTTTCGTGTGACCA
AGGCGCGCCCCAGAGGATACGGGTCGCTCGTGCGGTGCAAGAAACAGACA
CGAGTTCATCCCTTGCTTTTGGTTCTGGGACGGCGAGGAAATCGCTGGAG
CCACTTCATATAGCGATCCGTCCATTGACATGAGGGTTACCCCAATAGGT
TCCGGTCCACTGATTGATATTTGGCGTCCCGTTCATTCATGCTGCATTAA
AAGATATACAGAGATTAGAGGGTGATGGCATTCATAGGTCGATGACAATG
GCGTAGTCCGCTTGGGTAGAAGGAGAAACCACCACTTACGTTGTGTTTCC
AAGAATACAGGATCGCATTTTTCTTCAAATTGTAACCGAGGGGTGGGTCT
TCTCTAGCTTCATCTTAACTTGTGAACACGGGGTTCTCAAGTTGTACCTG
GGATGCGCGTGGTGAAATGATATTTCCGGGTCGATGTCCTGAAGTTCGGG
TCAGTACGACGGGGTGGGGTGTAGGGCTAGAGACGGCTAAAATGTGCCGG
TGCCGTGCCTACTATTAATTGTAGTGCTCTGTTCATTTCTTTCTCTTGCC
TCGTGGCAGGGTTTTACCGTGGACCGCGATGTTGACTCTGTTTTCCCCGA
TAGGTATATGTTGTAACTCAGCACCCTGGTAGGTACGCAATATACTATAG
TTAGCGCTTTCACATTGGGGGAAGAGATGGAATATCCGGCTCTCATCGTG
ATATCTCTGACTGTTTTTTGTGACTAAGGAGTAAGTTGGGCGAATGCCGA
GTGTGCGGTCTCGAGATGACTTCGCTGATGGAACTCAGCGCCTTTGAATG
CAGTAAAAATTATGGAGTAGCTTCTGTCTGTGCGTTTGTTGTAGCACCC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1037:34997..36795+

>mRNA_F-serratus_M_contig1037.387.1 ID=mRNA_F-serratus_M_contig1037.387.1|Name=mRNA_F-serratus_M_contig1037.387.1|organism=Fucus serratus male|type=CDS|length=558bp|location=Sequence derived from alignment at F-serratus_M_contig1037:34997..36795+ (Fucus serratus male)
ATGGCCTACGGCGGCTCCGCAGCGCTTGCTGTGGGCGTGAATGTGGCGGG
ATGGCTCGCACTATTTTACGGAAATTCCGTTCACGGGGGCAGGTCACTTG
CGATGGTTGACAATCCATTCCGGATGGCCTACGGCGGCTCCGCAGCGCTT
GCTGTGGGCGTGAATGTGGCGGGATGGCTCGCACTATTTTACGGAAATTC
CGTTCACGGGGGCAGGTCACTTGCGATGGTTGACAATCCATTCCGGGCGT
TGCTAGCGGCCCCTATATTCGTACTATGTGGGGTCTTGTTCGCGTTTGGC
TACAGGCCGGAGTTGCTCAAACGAGTCAAAGCCCGGGCTGGCCTAAAGAA
CAAAAGATTCAAGGTTGCCTCCACCCTAAAAAAAAAATTGAAGAGGAAGT
AAGCGTTGCTAGCGGCCCCTATATTCGTACTATGTGGGGTCTTGTTCGCG
TTTGGCTACAGGCCGGAGTTGCTCAAACGAGTCAAAGCCCGGGCTGGCCT
AAAGAACAAAAGATTCAAGGTTGCCTCCACCCTAAAAAAAAAATTGAAGA
GGAAGTAA
back to top