mRNA_F-serratus_M_contig1037.387.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1037.387.1
Unique NamemRNA_F-serratus_M_contig1037.387.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1037.387.1 vs. uniprot
Match: A0A218YY52_9HELO (DUF962 domain-containing protein n=1 Tax=Marssonina coronariae TaxID=503106 RepID=A0A218YY52_9HELO)

HSP 1 Score: 67.8 bits (164), Expect = 1.860e-9
Identity = 37/80 (46.25%), Postives = 50/80 (62.50%), Query Frame = 1 
Query:   70 LAVGVNVAGWLALFYGNSVHGGRSLAMVDNPFRALLAAPIFVLCGVLFAFGYRPELLKRVKARAGLKNKRFKVASTLKKK 309
            +++ V VA W+A F G+ V  GR+ A++DN  +AL+ AP FV    LFAFGYRPEL KRV      + K+FK     K+K
Sbjct:  111 ISIVVFVASWVAQFVGHGVWEGRAPALLDNLVQALVLAPFFVFMEGLFAFGYRPELQKRVSEAVDKEIKKFKAEKAQKQK 190
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BLAST of mRNA_F-serratus_M_contig1037.387.1 vs. uniprot
Match: G5A4J0_PHYSP (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=G5A4J0_PHYSP)

HSP 1 Score: 64.7 bits (156), Expect = 2.080e-8
Identity = 43/103 (41.75%), Postives = 60/103 (58.25%), Query Frame = 1 
Query:    4 SLLVIASYVTANLWMA-YGGSA------ALAVGVNVAGWLALFYGNSVHGGRSLAMVDNPFRALLAAPIFVLCGVLFAFGYRPELLKRVKARAGLKNKRFKVA 291
            ++LV ASY+ AN ++  Y  S        +A+GV+   W+  F G+ V   R  A+ D+  +AL+ AP+FVL   LFAFGYRP+L KRV A A    K F+ A
Sbjct:   95 AILVFASYLFANFFVQDYAPSHFERPGWQVALGVHCFAWIMQFIGHGVFERRKPALFDSLDQALVTAPMFVLLEALFAFGYRPQLYKRVSAAAKENIKAFRAA 197
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BLAST of mRNA_F-serratus_M_contig1037.387.1 vs. uniprot
Match: H0ELK3_GLAL7 (Putative Uncharacterized endoplasmic reticulum membrane protein n=1 Tax=Glarea lozoyensis (strain ATCC 74030 / MF5533) TaxID=1104152 RepID=H0ELK3_GLAL7)

HSP 1 Score: 61.6 bits (148), Expect = 2.440e-8
Identity = 33/78 (42.31%), Postives = 44/78 (56.41%), Query Frame = 1 
Query:   82 VNVAGWLALFYGNSVHGGRSLAMVDNPFRALLAAPIFVLCGVLFAFGYRPELLKRVKARAGLKNKRFKVASTLKKKLK 315
            V +  W+A F G+    GR+ A++DN  +AL+ AP FV   VLF FGYRPEL KRV      + K+ K     K  +K
Sbjct:   13 VEIVAWVAQFVGHGAFEGRAPALLDNLTQALVLAPFFVFMEVLFKFGYRPELQKRVNDAVEKEIKKVKAEKAAKAAVK 90
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BLAST of mRNA_F-serratus_M_contig1037.387.1 vs. uniprot
Match: S3D4W7_GLAL2 (Uncharacterized protein n=1 Tax=Glarea lozoyensis (strain ATCC 20868 / MF5171) TaxID=1116229 RepID=S3D4W7_GLAL2)

HSP 1 Score: 63.9 bits (154), Expect = 3.510e-8
Identity = 37/94 (39.36%), Postives = 51/94 (54.26%), Query Frame = 1 
Query:   37 NLWMAYGGSA-ALAVGVNVAGWLALFYGNSVHGGRSLAMVDNPFRALLAAPIFVLCGVLFAFGYRPELLKRVKARAGLKNKRFKVASTLKKKLK 315
            +L   YG S   + + V +  W+A F G+    GR+ A++DN  +AL+ AP FV   VLF FGYRPEL KRV      + K+ K     K  +K
Sbjct:   98 HLTTIYGSSVNTIGIAVEIVAWVAQFVGHGAFEGRAPALLDNLTQALVLAPFFVFMEVLFKFGYRPELQKRVNDAVEKEIKKVKAEKAAKAAVK 191
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BLAST of mRNA_F-serratus_M_contig1037.387.1 vs. uniprot
Match: A0A0C3D6Y8_9PEZI (Uncharacterized protein (Fragment) n=1 Tax=Oidiodendron maius Zn TaxID=913774 RepID=A0A0C3D6Y8_9PEZI)

HSP 1 Score: 63.2 bits (152), Expect = 4.940e-8
Identity = 30/61 (49.18%), Postives = 40/61 (65.57%), Query Frame = 1 
Query:   67 ALAVGVNVAGWLALFYGNSVHGGRSLAMVDNPFRALLAAPIFVLCGVLFAFGYRPELLKRV 249
            A A+ V +  W+  F G+ V  GR+ A++DN  ++L+ AP FV   VLF FGYRPEL KRV
Sbjct:  109 AAAIAVEILSWILQFIGHGVFEGRAPALLDNLLQSLVLAPFFVFMEVLFKFGYRPELQKRV 169
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BLAST of mRNA_F-serratus_M_contig1037.387.1 vs. uniprot
Match: A0A3F2S059_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S059_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 5.190e-8
Identity = 34/73 (46.58%), Postives = 45/73 (61.64%), Query Frame = 1 
Query:   70 LAVGVNVAGWLALFYGNSVHGGRSLAMVDNPFRALLAAPIFVLCGVLFAFGYRPELLKRVKARAGLKNKRFKV 288
            +A+GV+   W+  F G+ V   R  A+ D+  +AL+ AP+FVL   LFAFGYRPEL KRV A A    K F+ 
Sbjct:  124 IALGVHCFAWIMQFIGHGVFERRKPALFDSLDQALVTAPMFVLLEALFAFGYRPELYKRVTAEAKANIKAFRA 196
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BLAST of mRNA_F-serratus_M_contig1037.387.1 vs. uniprot
Match: A0A4Q2DMD9_9AGAR (Uncharacterized protein n=1 Tax=Candolleomyces aberdarensis TaxID=2316362 RepID=A0A4Q2DMD9_9AGAR)

HSP 1 Score: 61.6 bits (148), Expect = 2.250e-7
Identity = 28/60 (46.67%), Postives = 41/60 (68.33%), Query Frame = 1 
Query:   70 LAVGVNVAGWLALFYGNSVHGGRSLAMVDNPFRALLAAPIFVLCGVLFAFGYRPELLKRV 249
            +A G++   W+A FYG+ VH  R+ A++DN   AL+ AP FV   +LF FGYRP++ KR+
Sbjct:  115 IAGGLHAFSWVAQFYGHGVHERRAPALLDNLIGALVLAPFFVHLEILFKFGYRPDMHKRI 174
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BLAST of mRNA_F-serratus_M_contig1037.387.1 vs. uniprot
Match: U4KWL4_PYROM (Similar to Uncharacterized endoplasmic reticulum membrane protein YGL010W acc. no. P25338 n=1 Tax=Pyronema omphalodes (strain CBS 100304) TaxID=1076935 RepID=U4KWL4_PYROM)

HSP 1 Score: 60.8 bits (146), Expect = 3.610e-7
Identity = 34/81 (41.98%), Postives = 50/81 (61.73%), Query Frame = 1 
Query:   82 VNVAGWLALFYGNSVHGGRSLAMVDNPFRALLAAPIFVLCGVLFAFGYRPELLKRVKARAGLK----NKRFKVASTLKKKL 312
            +    W+A F G+ V   ++ A+VDN  +AL  AP+FV   VLF FGYRPEL KR++A+  +K    + R K  + +KK+L
Sbjct:  110 IQAGSWIAQFIGHGVWEKKAPALVDNLVQALFLAPLFVWIEVLFKFGYRPELRKRMEAQVKIKRAELDARGKKGAEVKKEL 190
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BLAST of mRNA_F-serratus_M_contig1037.387.1 vs. uniprot
Match: A0A4Y7T5X7_9AGAR (DUF962-domain-containing protein n=1 Tax=Coprinellus micaceus TaxID=71717 RepID=A0A4Y7T5X7_9AGAR)

HSP 1 Score: 60.1 bits (144), Expect = 6.640e-7
Identity = 31/76 (40.79%), Postives = 47/76 (61.84%), Query Frame = 1 
Query:   22 SYVTANLWMAYGGSAALAVGVNVAGWLALFYGNSVHGGRSLAMVDNPFRALLAAPIFVLCGVLFAFGYRPELLKRV 249
            S +TA  +   G    +A  ++V  W+A FYG+ VH  R+ A++DN   AL+ AP FV   +L+ FGYRP++ KR+
Sbjct:   91 SLLTATAFSYRGDHNLIAGALHVFTWIAQFYGHGVHEKRAPALLDNLVGALVLAPFFVHLEILYHFGYRPDMHKRI 166
[Close]
BLAST of mRNA_F-serratus_M_contig1037.387.1 vs. uniprot
Match: A0A6A6YG79_9PEZI (DUF962-domain-containing protein n=2 Tax=Mytilinidiaceae TaxID=281242 RepID=A0A6A6YG79_9PEZI)

HSP 1 Score: 60.1 bits (144), Expect = 7.100e-7
Identity = 28/59 (47.46%), Postives = 38/59 (64.41%), Query Frame = 1 
Query:   73 AVGVNVAGWLALFYGNSVHGGRSLAMVDNPFRALLAAPIFVLCGVLFAFGYRPELLKRV 249
            A G+N   W+  F G+    GR+ A++DN  +AL  AP+FV   VLF FGYRPEL +R+
Sbjct:  110 AAGINAVAWILQFIGHGKFEGRAPALLDNLVQALFLAPLFVWLEVLFYFGYRPELRRRL 168
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1037.387.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A218YY52_9HELO1.860e-946.25DUF962 domain-containing protein n=1 Tax=Marssonin... [more]
G5A4J0_PHYSP2.080e-841.75Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
H0ELK3_GLAL72.440e-842.31Putative Uncharacterized endoplasmic reticulum mem... [more]
S3D4W7_GLAL23.510e-839.36Uncharacterized protein n=1 Tax=Glarea lozoyensis ... [more]
A0A0C3D6Y8_9PEZI4.940e-849.18Uncharacterized protein (Fragment) n=1 Tax=Oidiode... [more]
A0A3F2S059_9STRA5.190e-846.58Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A4Q2DMD9_9AGAR2.250e-746.67Uncharacterized protein n=1 Tax=Candolleomyces abe... [more]
U4KWL4_PYROM3.610e-741.98Similar to Uncharacterized endoplasmic reticulum m... [more]
A0A4Y7T5X7_9AGAR6.640e-740.79DUF962-domain-containing protein n=1 Tax=Coprinell... [more]
A0A6A6YG79_9PEZI7.100e-747.46DUF962-domain-containing protein n=2 Tax=Mytilinid... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1037contigF-serratus_M_contig1037:34997..36795 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.0
Seed ortholog evalue5.1e-12
Seed eggNOG ortholog2880.D7FJ56
Hectar predicted targeting categorysignal peptide
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006629,GO:0006643,GO:0006665,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016042,GO:0030149,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046466,GO:0046519,GO:0046521,GO:0071704,GO:0097164,GO:0098827,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.sphingoid catabolic process
EggNOG OGsCOG4539@1,KOG3292@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1363
Cds size279
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1037.387.1prot_F-serratus_M_contig1037.387.1Fucus serratus malepolypeptideF-serratus_M_contig1037 35042..35756 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928847.9431434-UTR-F-serratus_M_contig1037:34996..350411622928847.9431434-UTR-F-serratus_M_contig1037:34996..35041Fucus serratus maleUTRF-serratus_M_contig1037 34997..35041 +
1690962599.0828621-UTR-F-serratus_M_contig1037:34996..350411690962599.0828621-UTR-F-serratus_M_contig1037:34996..35041Fucus serratus maleUTRF-serratus_M_contig1037 34997..35041 +
1622928847.976906-UTR-F-serratus_M_contig1037:35756..367951622928847.976906-UTR-F-serratus_M_contig1037:35756..36795Fucus serratus maleUTRF-serratus_M_contig1037 35757..36795 +
1690962599.1310425-UTR-F-serratus_M_contig1037:35756..367951690962599.1310425-UTR-F-serratus_M_contig1037:35756..36795Fucus serratus maleUTRF-serratus_M_contig1037 35757..36795 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928847.9555988-CDS-F-serratus_M_contig1037:35041..351641622928847.9555988-CDS-F-serratus_M_contig1037:35041..35164Fucus serratus maleCDSF-serratus_M_contig1037 35042..35164 +
1690962599.09895-CDS-F-serratus_M_contig1037:35041..351641690962599.09895-CDS-F-serratus_M_contig1037:35041..35164Fucus serratus maleCDSF-serratus_M_contig1037 35042..35164 +
1622928847.9660513-CDS-F-serratus_M_contig1037:35600..357561622928847.9660513-CDS-F-serratus_M_contig1037:35600..35756Fucus serratus maleCDSF-serratus_M_contig1037 35601..35756 +
1690962599.1164684-CDS-F-serratus_M_contig1037:35600..357561690962599.1164684-CDS-F-serratus_M_contig1037:35600..35756Fucus serratus maleCDSF-serratus_M_contig1037 35601..35756 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1037.387.1

>prot_F-serratus_M_contig1037.387.1 ID=prot_F-serratus_M_contig1037.387.1|Name=mRNA_F-serratus_M_contig1037.387.1|organism=Fucus serratus male|type=polypeptide|length=93bp
MAYGGSAALAVGVNVAGWLALFYGNSVHGGRSLAMVDNPFRALLAAPIFV
LCGVLFAFGYRPELLKRVKARAGLKNKRFKVASTLKKKLKRK*
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mRNA from alignment at F-serratus_M_contig1037:34997..36795+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1037.387.1 ID=mRNA_F-serratus_M_contig1037.387.1|Name=mRNA_F-serratus_M_contig1037.387.1|organism=Fucus serratus male|type=mRNA|length=1799bp|location=Sequence derived from alignment at F-serratus_M_contig1037:34997..36795+ (Fucus serratus male)
GCGTCGCTTCTGGTGATTGCTTCGTACGTCACGGCCAACTTGTGGATGGC
CTACGGCGGCTCCGCAGCGCTTGCTGTGGGCGTGAATGTGGCGGGATGGC
TCGCACTATTTTACGGAAATTCCGTTCACGGGGGCAGGTCACTTGCGATG
GTTGACAATCCATTCCGGGTGAGAGTTTTTGGAAACGACGAGAACATCAT
CCCTGTAGTATCCTCTTTAAAATATCGATCAGACCGCAGTACGCCCTTTG
TGAAGACGGCGGTGGACTAGTGTAGTTCTTAAGCATCTCCATGTACCGTT
GTTCCCTACTGGCATTGCAGGCGCCTGTGTGGTTATGACCCCCAAGCCTC
TACATTCAGCCCCCCCCCGCGCGCAAGGATAGTCAGTTTTTTTTCATTTC
AACGTCGCATGTTGGCCTCCGCTAGAGCTACGCGTCTTTTTTTTAGAAGG
CGTTGAAACTACCCGTAAATCTTACGTTGATTTCCTTCATCTTTCACCGA
TTAAATACGTCCCGCTCGGTAGGGCGCATATTGTCTTTTGAAGATACCCG
CTTGATTGTCCATATCTGTTCCCACGCTACTCTCGCCCGACGTTATTGGA
ACAGGCGTTGCTAGCGGCCCCTATATTCGTACTATGTGGGGTCTTGTTCG
CGTTTGGCTACAGGCCGGAGTTGCTCAAACGAGTCAAAGCCCGGGCTGGC
CTAAAGAACAAAAGATTCAAGGTTGCCTCCACCCTAAAAAAAAAATTGAA
GAGGAAGTAAGAGTGGCGCTGGAGCGGGAAGATCATTCGCCCGATGATGC
AAATAATTCTTCGATGCTCGGTGTTTGATGTTTGTTGATGCTTGCAAAAT
GCCTAACGTCAAGTGGCGAGTACTTCGTTTGACGAGGAGATTCCTTCACG
CTTACCTCCTGCGCTTTGTTCGAGGGGTCGCGTAGATTTTCGTGTGACCA
AGGCGCGCCCCAGAGGATACGGGTCGCTCGTGCGGTGCAAGAAACAGACA
CGAGTTCATCCCTTGCTTTTGGTTCTGGGACGGCGAGGAAATCGCTGGAG
CCACTTCATATAGCGATCCGTCCATTGACATGAGGGTTACCCCAATAGGT
TCCGGTCCACTGATTGATATTTGGCGTCCCGTTCATTCATGCTGCATTAA
AAGATATACAGAGATTAGAGGGTGATGGCATTCATAGGTCGATGACAATG
GCGTAGTCCGCTTGGGTAGAAGGAGAAACCACCACTTACGTTGTGTTTCC
AAGAATACAGGATCGCATTTTTCTTCAAATTGTAACCGAGGGGTGGGTCT
TCTCTAGCTTCATCTTAACTTGTGAACACGGGGTTCTCAAGTTGTACCTG
GGATGCGCGTGGTGAAATGATATTTCCGGGTCGATGTCCTGAAGTTCGGG
TCAGTACGACGGGGTGGGGTGTAGGGCTAGAGACGGCTAAAATGTGCCGG
TGCCGTGCCTACTATTAATTGTAGTGCTCTGTTCATTTCTTTCTCTTGCC
TCGTGGCAGGGTTTTACCGTGGACCGCGATGTTGACTCTGTTTTCCCCGA
TAGGTATATGTTGTAACTCAGCACCCTGGTAGGTACGCAATATACTATAG
TTAGCGCTTTCACATTGGGGGAAGAGATGGAATATCCGGCTCTCATCGTG
ATATCTCTGACTGTTTTTTGTGACTAAGGAGTAAGTTGGGCGAATGCCGA
GTGTGCGGTCTCGAGATGACTTCGCTGATGGAACTCAGCGCCTTTGAATG
CAGTAAAAATTATGGAGTAGCTTCTGTCTGTGCGTTTGTTGTAGCACCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1037:34997..36795+

>mRNA_F-serratus_M_contig1037.387.1 ID=mRNA_F-serratus_M_contig1037.387.1|Name=mRNA_F-serratus_M_contig1037.387.1|organism=Fucus serratus male|type=CDS|length=558bp|location=Sequence derived from alignment at F-serratus_M_contig1037:34997..36795+ (Fucus serratus male)
ATGGCCTACGGCGGCTCCGCAGCGCTTGCTGTGGGCGTGAATGTGGCGGG
ATGGCTCGCACTATTTTACGGAAATTCCGTTCACGGGGGCAGGTCACTTG
CGATGGTTGACAATCCATTCCGGATGGCCTACGGCGGCTCCGCAGCGCTT
GCTGTGGGCGTGAATGTGGCGGGATGGCTCGCACTATTTTACGGAAATTC
CGTTCACGGGGGCAGGTCACTTGCGATGGTTGACAATCCATTCCGGGCGT
TGCTAGCGGCCCCTATATTCGTACTATGTGGGGTCTTGTTCGCGTTTGGC
TACAGGCCGGAGTTGCTCAAACGAGTCAAAGCCCGGGCTGGCCTAAAGAA
CAAAAGATTCAAGGTTGCCTCCACCCTAAAAAAAAAATTGAAGAGGAAGT
AAGCGTTGCTAGCGGCCCCTATATTCGTACTATGTGGGGTCTTGTTCGCG
TTTGGCTACAGGCCGGAGTTGCTCAAACGAGTCAAAGCCCGGGCTGGCCT
AAAGAACAAAAGATTCAAGGTTGCCTCCACCCTAAAAAAAAAATTGAAGA
GGAAGTAA
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