mRNA_F-serratus_M_contig1036.383.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1036.383.1
Unique NamemRNA_F-serratus_M_contig1036.383.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1036.383.1 vs. uniprot
Match: D7FP73_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP73_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 1.210e-12
Identity = 31/58 (53.45%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:    1 LYSTLQWLHGWQVRAHEQTVERLFGVFPESWSWIGHDGVLEAFTQSHPRVPMDCKSAI 174
            +YS L+ LH WQV AH   +E   GV  +SWS  G DGVLE +TQSHPRVP +C++ +
Sbjct:  313 VYSALKRLHSWQVGAHASAIESRLGVAADSWSSAGDDGVLEGYTQSHPRVPEECEAPV 370
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1036.383.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FP73_ECTSI1.210e-1253.45Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1036contigF-serratus_M_contig1036:194330..195195 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.0
Seed ortholog evalue2.1e-10
Seed eggNOG ortholog2880.D7FP73
Hectar predicted targeting categoryother localisation
EggNOG free text desc.palmitoyl-(protein) hydrolase activity
EggNOG OGs2QPNZ@2759,COG1075@1
Ec32 ortholog descriptionAlpha/Beta hydrolase fold
Ec32 orthologEc-08_000590.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size355
Cds size354
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1036.383.1prot_F-serratus_M_contig1036.383.1Fucus serratus malepolypeptideF-serratus_M_contig1036 194330..195194 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928846.979772-CDS-F-serratus_M_contig1036:194329..1943701622928846.979772-CDS-F-serratus_M_contig1036:194329..194370Fucus serratus maleCDSF-serratus_M_contig1036 194330..194370 +
1690962598.7224858-CDS-F-serratus_M_contig1036:194329..1943701690962598.7224858-CDS-F-serratus_M_contig1036:194329..194370Fucus serratus maleCDSF-serratus_M_contig1036 194330..194370 +
1622928847.000521-CDS-F-serratus_M_contig1036:194583..1947181622928847.000521-CDS-F-serratus_M_contig1036:194583..194718Fucus serratus maleCDSF-serratus_M_contig1036 194584..194718 +
1690962598.7333024-CDS-F-serratus_M_contig1036:194583..1947181690962598.7333024-CDS-F-serratus_M_contig1036:194583..194718Fucus serratus maleCDSF-serratus_M_contig1036 194584..194718 +
1622928847.0188985-CDS-F-serratus_M_contig1036:195016..1951941622928847.0188985-CDS-F-serratus_M_contig1036:195016..195194Fucus serratus maleCDSF-serratus_M_contig1036 195017..195194 +
1690962598.745717-CDS-F-serratus_M_contig1036:195016..1951941690962598.745717-CDS-F-serratus_M_contig1036:195016..195194Fucus serratus maleCDSF-serratus_M_contig1036 195017..195194 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1036.383.1

>prot_F-serratus_M_contig1036.383.1 ID=prot_F-serratus_M_contig1036.383.1|Name=mRNA_F-serratus_M_contig1036.383.1|organism=Fucus serratus male|type=polypeptide|length=118bp
LYSTLQWLHGWQVRAHEQTVERLFGVFPESWSWIGHDGVLEAFTQSHPRV
PMDCKSAISIGFPRHLSSMKPGVWHSVSMAVDHLWVHVDGDEARAVLGRL
ARNLRMIAESHADGPARR
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mRNA from alignment at F-serratus_M_contig1036:194330..195195+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1036.383.1 ID=mRNA_F-serratus_M_contig1036.383.1|Name=mRNA_F-serratus_M_contig1036.383.1|organism=Fucus serratus male|type=mRNA|length=866bp|location=Sequence derived from alignment at F-serratus_M_contig1036:194330..195195+ (Fucus serratus male)
CTATACTCGACGCTGCAGTGGCTCCATGGTTGGCAAGTGCGGTGAGCGAG
CCAGAACAGCGAGAAGCGTAACGATGTTTGTGTGCCAAGGTTTGTGCGCT
GTGGGGGGTGGGTTACGGCTGTGTTATTCCGCCCTTTGGTCAGCCCCATC
TCCTTGCAAAAACAGTGATGCACAGCCCCTTTGCCCAAGATTTTCGTAAC
CTTCATTGGTATGACAAGTGAATCTCGCGCAATCGGCAACGTGTGCTATG
CCAGCGCCCACGAGCAGACGGTGGAGAGGTTGTTCGGGGTTTTCCCGGAG
TCATGGAGTTGGATCGGGCACGACGGGGTGCTGGAGGCCTTCACGCAGAG
CCACCCTCGAGTCCCCATGGATTGCAAATCGGCCATCAGGTGAAAACCAA
AGGAAGATTCATGTTTTGACGGCACGCTTTTGATAGCATGCGTTCCCTAC
CATGCGCATCCAATTCTCAATTGTTTTTGTTACCGTCGAGCACGACTCGT
AGAAGAAGCAGAGCGCACTCTGCCAGCGCCGGCGAGGTGCATCGCGTTGA
ACATTTCAATATATACAATATAGTGAAGGACCGCACACGTGAGGGCACGC
GCAATGCCAATTTCTTACTCGGCAAACCTCTCTTACCTTCTCGTGGGACA
TATACACACACATACACATATGTGAATACATACGCAGTATTGGCTTCCCG
CGGCATCTATCATCGATGAAGCCAGGCGTCTGGCACAGCGTGTCCATGGC
CGTCGATCATCTGTGGGTGCACGTCGATGGCGACGAAGCGCGCGCCGTCC
TTGGACGACTGGCCCGCAACCTCCGGATGATCGCCGAGTCGCACGCCGAC
GGGCCTGCTAGGCGGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1036:194330..195195+

>mRNA_F-serratus_M_contig1036.383.1 ID=mRNA_F-serratus_M_contig1036.383.1|Name=mRNA_F-serratus_M_contig1036.383.1|organism=Fucus serratus male|type=CDS|length=708bp|location=Sequence derived from alignment at F-serratus_M_contig1036:194330..195195+ (Fucus serratus male)
CTATACTCGACGCTGCAGTGGCTCCATGGTTGGCAAGTGCGCTATACTCG
ACGCTGCAGTGGCTCCATGGTTGGCAAGTGCGCGCCCACGAGCAGACGGT
GGAGAGGTTGTTCGGGGTTTTCCCGGAGTCATGGAGTTGGATCGGGCACG
ACGGGGTGCTGGAGGCCTTCACGCAGAGCCACCCTCGAGTCCCCATGGAT
TGCAAATCGGCCATCAGCGCCCACGAGCAGACGGTGGAGAGGTTGTTCGG
GGTTTTCCCGGAGTCATGGAGTTGGATCGGGCACGACGGGGTGCTGGAGG
CCTTCACGCAGAGCCACCCTCGAGTCCCCATGGATTGCAAATCGGCCATC
AGTATTGGCTTCCCGCGGCATCTATCATCGATGAAGCCAGGCGTCTGGCA
CAGCGTGTCCATGGCCGTCGATCATCTGTGGGTGCACGTCGATGGCGACG
AAGCGCGCGCCGTCCTTGGACGACTGGCCCGCAACCTCCGGATGATCGCC
GAGTCGCACGCCGACGGGCCTGCTAGGCGGTATTGGCTTCCCGCGGCATC
TATCATCGATGAAGCCAGGCGTCTGGCACAGCGTGTCCATGGCCGTCGAT
CATCTGTGGGTGCACGTCGATGGCGACGAAGCGCGCGCCGTCCTTGGACG
ACTGGCCCGCAACCTCCGGATGATCGCCGAGTCGCACGCCGACGGGCCTG
CTAGGCGG
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