mRNA_F-serratus_M_contig1026.323.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1026.323.1
Unique NamemRNA_F-serratus_M_contig1026.323.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1026.323.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1026contigF-serratus_M_contig1026:267760..268132 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size266
Cds size150
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1026.323.1prot_F-serratus_M_contig1026.323.1Fucus serratus malepolypeptideF-serratus_M_contig1026 267820..268076 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928831.314189-UTR-F-serratus_M_contig1026:267759..2678191622928831.314189-UTR-F-serratus_M_contig1026:267759..267819Fucus serratus maleUTRF-serratus_M_contig1026 267760..267819 +
1690962592.5067947-UTR-F-serratus_M_contig1026:267759..2678191690962592.5067947-UTR-F-serratus_M_contig1026:267759..267819Fucus serratus maleUTRF-serratus_M_contig1026 267760..267819 +
1622928831.362666-UTR-F-serratus_M_contig1026:268076..2681321622928831.362666-UTR-F-serratus_M_contig1026:268076..268132Fucus serratus maleUTRF-serratus_M_contig1026 268077..268132 +
1690962592.5392606-UTR-F-serratus_M_contig1026:268076..2681321690962592.5392606-UTR-F-serratus_M_contig1026:268076..268132Fucus serratus maleUTRF-serratus_M_contig1026 268077..268132 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928831.3292747-CDS-F-serratus_M_contig1026:267819..2678671622928831.3292747-CDS-F-serratus_M_contig1026:267819..267867Fucus serratus maleCDSF-serratus_M_contig1026 267820..267867 +
1690962592.5206976-CDS-F-serratus_M_contig1026:267819..2678671690962592.5206976-CDS-F-serratus_M_contig1026:267819..267867Fucus serratus maleCDSF-serratus_M_contig1026 267820..267867 +
1622928831.344508-CDS-F-serratus_M_contig1026:267974..2680761622928831.344508-CDS-F-serratus_M_contig1026:267974..268076Fucus serratus maleCDSF-serratus_M_contig1026 267975..268076 +
1690962592.5314693-CDS-F-serratus_M_contig1026:267974..2680761690962592.5314693-CDS-F-serratus_M_contig1026:267974..268076Fucus serratus maleCDSF-serratus_M_contig1026 267975..268076 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1026.323.1

>prot_F-serratus_M_contig1026.323.1 ID=prot_F-serratus_M_contig1026.323.1|Name=mRNA_F-serratus_M_contig1026.323.1|organism=Fucus serratus male|type=polypeptide|length=50bp
MPGRRAGLLTSAESSSSFRVALMTALTVGEEAFALSFRRGVRVIGRRWL*
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mRNA from alignment at F-serratus_M_contig1026:267760..268132+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1026.323.1 ID=mRNA_F-serratus_M_contig1026.323.1|Name=mRNA_F-serratus_M_contig1026.323.1|organism=Fucus serratus male|type=mRNA|length=373bp|location=Sequence derived from alignment at F-serratus_M_contig1026:267760..268132+ (Fucus serratus male)
GGGAAGAGTCGCCGGTGAAGGCGGGTGCCAAATGTTTCCGGATCGCAACG
CGGGTTTAATATGCCGGGTCGCAGGGCGGGTTTATTGACAAGTGCGGAGA
GTTCGTCGGCAATTTCCTTGTGTCGCAGTCTTAGTTATTCTTATGTGGGA
CGTCGCTTAGTGTTGTGCTGTTGTTTGGAGTAGCCGATGAAGAGTCTTGT
CAATCGTTGTCGGAGAGTTTCCGGGTGGCGTTGATGACTGCACTGACGGT
CGGCGAAGAGGCTTTTGCGCTTTCCTTTCGAAGAGGGGTGCGTGTGATTG
GAAGGCGGTGGCTGTAGGTAAGGCTGCTGCGGAACATGCATTTGTTTCTA
CGAACGGTTAGTCTCGTTTAAAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1026:267760..268132+

>mRNA_F-serratus_M_contig1026.323.1 ID=mRNA_F-serratus_M_contig1026.323.1|Name=mRNA_F-serratus_M_contig1026.323.1|organism=Fucus serratus male|type=CDS|length=300bp|location=Sequence derived from alignment at F-serratus_M_contig1026:267760..268132+ (Fucus serratus male)
ATGCCGGGTCGCAGGGCGGGTTTATTGACAAGTGCGGAGAGTTCGTCGAT
GCCGGGTCGCAGGGCGGGTTTATTGACAAGTGCGGAGAGTTCGTCGAGTT
TCCGGGTGGCGTTGATGACTGCACTGACGGTCGGCGAAGAGGCTTTTGCG
CTTTCCTTTCGAAGAGGGGTGCGTGTGATTGGAAGGCGGTGGCTGTAGAG
TTTCCGGGTGGCGTTGATGACTGCACTGACGGTCGGCGAAGAGGCTTTTG
CGCTTTCCTTTCGAAGAGGGGTGCGTGTGATTGGAAGGCGGTGGCTGTAG
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