mRNA_F-serratus_M_contig1026.322.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1026.322.1
Unique NamemRNA_F-serratus_M_contig1026.322.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig1026.322.1 vs. uniprot
Match: A0A6H5L8A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8A7_9PHAE)

HSP 1 Score: 202 bits (513), Expect = 6.830e-59
Identity = 114/217 (52.53%), Postives = 139/217 (64.06%), Query Frame = 1 
Query:    1 MEIFLPSVRVSSASGTKPCGEPTCTTVTVPAGPVYQCSCDR*MHVFCGRGIEEEGYGQQRECTDCQKNS--KEAGGYQTEMVANLAELIEDWDTVHVRRFRSGCRGLSDAGQAIMLEVTEILPKKRGGFSTQTVIRCWLKAGIFSSNHENALRRKDMQPDREDKEDTAIIDSTATIDDLCNLVAKITMPTSITD--AISMPRILTDILCIEKNPQLT 639
            ME FLPS   SSA+G +PCGEPTC   +     V+QC C R MH FCGRGI EEGYGQQREC+DCQK+    +AG   + M  +  E  +D         R GCRGLSDAGQA ML+VTEIL +K   FS QTV+RCWLKA I    HENAL+ +D + DREDKE        A +DDLC++V K+++P S  D  A SMPR+L+D L +E    LT
Sbjct:    1 MERFLPSAGESSAAGLRPCGEPTCQQKSQLVSAVHQCPCGRSMHAFCGRGIGEEGYGQQRECSDCQKSKGGDQAGSSSSPMEVDAEENEQD--------SRRGCRGLSDAGQATMLDVTEILSQKWESFSDQTVVRCWLKATILPREHENALKGRDTRLDREDKE-------AAALDDLCDMVKKMSLPESAKDLDARSMPRVLSDNLFVESTSGLT 202
[Close]
BLAST of mRNA_F-serratus_M_contig1026.322.1 vs. uniprot
Match: A0A6H5K766_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K766_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 1.060e-41
Identity = 76/125 (60.80%), Postives = 98/125 (78.40%), Query Frame = 3 
Query:  651 VRGAITTWLNVEDDLAVLEAEIDMEIQAVENNFANLEVDSASSEDEDGDGRSESCIAPSLTEADVRSRLKEVCYYLYPNGKNGEYRKTLYLPSRSVHSFIHKSRAKRKAREGRETQATLRDLWRN 1025
            VR A+ TWL+VEDD  VLE E+ ME++ VENN ANL VD  S++DEDG GR ESC+  S+TEA++R  L++V  YLY NGK+GEYR+T YL S+ VHSF HK++ KR+A+EG E QATLRD+WR+
Sbjct:   35 VREAVKTWLSVEDDPDVLEEEVAMELEIVENNLANLAVDDDSTDDEDGGGRPESCVTSSMTEAEIRGSLEKVRSYLYANGKDGEYRETQYLLSKVVHSFTHKTQVKRRAKEGGELQATLRDMWRS 159
[Close]
BLAST of mRNA_F-serratus_M_contig1026.322.1 vs. uniprot
Match: A0A6H5JEY2_9PHAE (HTH CENPB-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEY2_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 1.240e-41
Identity = 86/143 (60.14%), Postives = 105/143 (73.43%), Query Frame = 1 
Query:  223 YQTEMVANLAELIEDWDTVHVRRFRSGCRGLSDAGQAIMLEVTEILPKKRGGFSTQTVIRCWLKAGIFSSNHENALRRKDMQPDREDKEDTAIIDSTATIDDLCNLVAKITMPTSITDAISMPRILTDILCIEKNPQLTAAKL 651
            Y+TEMVA LA+LI+ WD V  R+ R GCRGL+DAGQA ML+VTEIL +K   FS+QTVIRCWLKA I    HENAL+ KD + DREDKEDTAIID      DLC +V+K++MP S TD+ S  R+LTD L +EK   LT A++
Sbjct:  290 YKTEMVARLADLIDVWDAVRARKIRRGCRGLNDAGQATMLDVTEILSEKWESFSSQTVIRCWLKANILPREHENALKGKDTRLDREDKEDTAIID------DLCEMVSKMSMPASATDSRSTARVLTDNLFVEKASGLTDAEV 426
[Close]
BLAST of mRNA_F-serratus_M_contig1026.322.1 vs. uniprot
Match: A0A6H5JV64_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV64_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 5.170e-41
Identity = 86/143 (60.14%), Postives = 105/143 (73.43%), Query Frame = 1 
Query:  223 YQTEMVANLAELIEDWDTVHVRRFRSGCRGLSDAGQAIMLEVTEILPKKRGGFSTQTVIRCWLKAGIFSSNHENALRRKDMQPDREDKEDTAIIDSTATIDDLCNLVAKITMPTSITDAISMPRILTDILCIEKNPQLTAAKL 651
            Y+TEMVA LA+LI+ WD V  R+ R GCRGL+DAGQA ML+VTEIL +K   FS+QTVIRCWLKA I    HENAL+ KD + DREDKEDTAIID      DLC +V+K++MP S TD+ S  R+LTD L +EK   LT A++
Sbjct:  495 YKTEMVARLADLIDVWDAVRARKIRRGCRGLNDAGQATMLDVTEILSEKWESFSSQTVIRCWLKANILPREHENALKGKDTRLDREDKEDTAIID------DLCEMVSKMSMPASATDSRSTARVLTDNLFVEKASGLTDAEV 631
[Close]
BLAST of mRNA_F-serratus_M_contig1026.322.1 vs. uniprot
Match: A0A6H5KIE7_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIE7_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 1.190e-40
Identity = 81/139 (58.27%), Postives = 98/139 (70.50%), Query Frame = 1 
Query:  223 YQTEMVANLAELIEDWDTVHVRRFRSGCRGLSDAGQAIMLEVTEILPKKRGGFSTQTVIRCWLKAGIFSSNHENALRRKDMQPDREDKEDTAIIDSTATIDDLCNLVAKITMPTSITDAISMPRILTDILCIEKNPQLT 639
            Y+TEMVA LA+LIEDWDTV  R+F+ GC+GLSDAGQA ML+VTEI  +K   F  QTVI CWLKAGI    H N L+  D + DREDK+D AIID       LC++V+K+ MP S+T   SMPR+LTD L +EK   LT
Sbjct:  124 YKTEMVARLADLIEDWDTVRARKFQRGCQGLSDAGQATMLDVTEIGSQKWRSFDVQTVITCWLKAGILPREHCNVLKGMDTRVDREDKDDAAIIDG------LCDMVSKMAMPASVTGYRSMPRVLTDNLLVEKGTDLT 256
[Close]
BLAST of mRNA_F-serratus_M_contig1026.322.1 vs. uniprot
Match: A0A6H5JNS8_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS8_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 1.420e-39
Identity = 81/139 (58.27%), Postives = 97/139 (69.78%), Query Frame = 1 
Query:  223 YQTEMVANLAELIEDWDTVHVRRFRSGCRGLSDAGQAIMLEVTEILPKKRGGFSTQTVIRCWLKAGIFSSNHENALRRKDMQPDREDKEDTAIIDSTATIDDLCNLVAKITMPTSITDAISMPRILTDILCIEKNPQLT 639
            Y+TEMVA LA+LIEDWDTV  R+ + GCRGLSDAGQA ML+VTEI  +K   F  QTVIRCWLKAGI    H   L+  D + DREDK+D AIID       LC++  K++MP S+TD  SMPR+LTD L +EK   LT
Sbjct:  327 YKTEMVARLADLIEDWDTVRARKIQRGCRGLSDAGQATMLDVTEICSQKWRSFDVQTVIRCWLKAGILPREHCKVLKGMDTRLDREDKDDAAIIDG------LCDMATKMSMPASVTDCRSMPRVLTDNLFVEKGTDLT 459
[Close]
BLAST of mRNA_F-serratus_M_contig1026.322.1 vs. uniprot
Match: A0A6H5KXD1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXD1_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 3.670e-38
Identity = 77/139 (55.40%), Postives = 97/139 (69.78%), Query Frame = 1 
Query:  223 YQTEMVANLAELIEDWDTVHVRRFRSGCRGLSDAGQAIMLEVTEILPKKRGGFSTQTVIRCWLKAGIFSSNHENALRRKDMQPDREDKEDTAIIDSTATIDDLCNLVAKITMPTSITDAISMPRILTDILCIEKNPQLT 639
            Y+TEMV  LA+LIEDWDTV  R+ +  CRGL+DAGQA ML+VTEI  +K   F  QTVIRCWLKAGI    H N L+  D + DREDK++ AI+D       LC++V+K++MP S+TD+ SM R LTD L +EK   LT
Sbjct:   13 YKTEMVERLADLIEDWDTVRARKIQGECRGLNDAGQATMLDVTEICSQKWRSFDVQTVIRCWLKAGILPREHCNVLKCMDTRLDREDKDNVAIVDG------LCDMVSKMSMPASVTDSRSMLRGLTDDLFVEKGTDLT 145
[Close]
BLAST of mRNA_F-serratus_M_contig1026.322.1 vs. uniprot
Match: A0A6H5K3T6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3T6_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 2.490e-35
Identity = 73/126 (57.94%), Postives = 94/126 (74.60%), Query Frame = 3 
Query:  651 VRGAITTWLNVEDDLAVLEAEIDMEIQAVENNFANLEVDSASSEDEDGDGRSESCIAPSLTEADVRSRLKEVCYYLYPNGKNGEYRKTLYLPSRSVHSFIHKSRAKRKAREGRETQATLRDLWRNS 1028
            VR AI TWL+VEDD +VLE E+ +E++ VE N ANLEVD ASS+DEDG  R  SC   S+TEA VR+ L+ V  YLY NGK+GEYR+T  L S++VHSF H+++ KR+++E    QATLRD+WR S
Sbjct:   34 VRKAIKTWLSVEDDPSVLEDEVALELEIVEQNMANLEVD-ASSDDEDGGDRPASCFTSSMTEAQVRASLESVRSYLYANGKDGEYRETQRLLSKTVHSFTHETQVKRRSKERGALQATLRDMWRKS 158
[Close]
BLAST of mRNA_F-serratus_M_contig1026.322.1 vs. uniprot
Match: A0A6H5K2S0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2S0_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 7.000e-35
Identity = 65/124 (52.42%), Postives = 95/124 (76.61%), Query Frame = 3 
Query:  651 VRGAITTWLNVEDDLAVLEAEIDMEIQAVENNFANLEV-DSASSEDEDGDGRSESCIAPSLTEADVRSRLKEVCYYLYPNGKNGEYRKTLYLPSRSVHSFIHKSRAKRKAREGRETQATLRDLW 1019
            VR A++TWL+VEDD  VL  E+++E++ V  N + + V D  SSE+ED DGR ESC+  +++EA+VR RL++V  YLY NG++GEY +T+YL S++VHSF H+++ KR+ +EG E QATLRD+W
Sbjct:   22 VRSAVSTWLSVEDDEEVLREEVELEMEEVTENMSRVHVEDDVSSEEEDQDGRQESCVTSTISEAEVRPRLEDVRSYLYANGRDGEYSETVYLLSKTVHSFTHETQVKRRTKEGGEVQATLRDVW 145
[Close]
BLAST of mRNA_F-serratus_M_contig1026.322.1 vs. uniprot
Match: A0A6H5JSR4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSR4_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 1.530e-34
Identity = 76/139 (54.68%), Postives = 94/139 (67.63%), Query Frame = 1 
Query:  223 YQTEMVANLAELIEDWDTVHVRRFRSGCRGLSDAGQAIMLEVTEILPKKRGGFSTQTVIRCWLKAGIFSSNHENALRRKDMQPDREDKEDTAIIDSTATIDDLCNLVAKITMPTSITDAISMPRILTDILCIEKNPQLT 639
            Y+TEM+A LA+L+EDWDTV  R+ + GC GLSDA QA ML+VTEI  +K   F  QT IRCWLKAGI    H N L+  D   DREDK+D AIID       LC++V+ ++MP S+ D  SMPR+LTD L +EK   LT
Sbjct:   13 YKTEMLARLADLVEDWDTVRARKIQRGCWGLSDARQATMLDVTEIYSQKWRSFDVQTGIRCWLKAGILPREHCNVLKGMDTWLDREDKDDAAIIDG------LCDMVSNMSMPASVMDYRSMPRVLTDNLFVEKGTDLT 145
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1026.322.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L8A7_9PHAE6.830e-5952.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K766_9PHAE1.060e-4160.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEY2_9PHAE1.240e-4160.14HTH CENPB-type domain-containing protein n=2 Tax=E... [more]
A0A6H5JV64_9PHAE5.170e-4160.14HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5KIE7_9PHAE1.190e-4058.27DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JNS8_9PHAE1.420e-3958.27HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5KXD1_9PHAE3.670e-3855.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3T6_9PHAE2.490e-3557.94Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2S0_9PHAE7.000e-3552.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSR4_9PHAE1.530e-3454.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1026contigF-serratus_M_contig1026:186115..193542 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1031
Cds size630
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1026.322.1prot_F-serratus_M_contig1026.322.1Fucus serratus malepolypeptideF-serratus_M_contig1026 192913..193542 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928831.4378362-UTR-F-serratus_M_contig1026:186114..1863161622928831.4378362-UTR-F-serratus_M_contig1026:186114..186316Fucus serratus maleUTRF-serratus_M_contig1026 186115..186316 +
1690962592.5566163-UTR-F-serratus_M_contig1026:186114..1863161690962592.5566163-UTR-F-serratus_M_contig1026:186114..186316Fucus serratus maleUTRF-serratus_M_contig1026 186115..186316 +
1622928831.4556532-UTR-F-serratus_M_contig1026:187923..1879431622928831.4556532-UTR-F-serratus_M_contig1026:187923..187943Fucus serratus maleUTRF-serratus_M_contig1026 187924..187943 +
1690962592.566699-UTR-F-serratus_M_contig1026:187923..1879431690962592.566699-UTR-F-serratus_M_contig1026:187923..187943Fucus serratus maleUTRF-serratus_M_contig1026 187924..187943 +
1622928831.4728942-UTR-F-serratus_M_contig1026:188448..1885061622928831.4728942-UTR-F-serratus_M_contig1026:188448..188506Fucus serratus maleUTRF-serratus_M_contig1026 188449..188506 +
1690962592.575148-UTR-F-serratus_M_contig1026:188448..1885061690962592.575148-UTR-F-serratus_M_contig1026:188448..188506Fucus serratus maleUTRF-serratus_M_contig1026 188449..188506 +
1622928831.4874358-UTR-F-serratus_M_contig1026:191197..1912161622928831.4874358-UTR-F-serratus_M_contig1026:191197..191216Fucus serratus maleUTRF-serratus_M_contig1026 191198..191216 +
1690962592.5943327-UTR-F-serratus_M_contig1026:191197..1912161690962592.5943327-UTR-F-serratus_M_contig1026:191197..191216Fucus serratus maleUTRF-serratus_M_contig1026 191198..191216 +
1622928831.5125914-UTR-F-serratus_M_contig1026:192810..1929121622928831.5125914-UTR-F-serratus_M_contig1026:192810..192912Fucus serratus maleUTRF-serratus_M_contig1026 192811..192912 +
1690962592.6068895-UTR-F-serratus_M_contig1026:192810..1929121690962592.6068895-UTR-F-serratus_M_contig1026:192810..192912Fucus serratus maleUTRF-serratus_M_contig1026 192811..192912 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928831.5285645-CDS-F-serratus_M_contig1026:192912..1935421622928831.5285645-CDS-F-serratus_M_contig1026:192912..193542Fucus serratus maleCDSF-serratus_M_contig1026 192913..193542 +
1690962592.6148374-CDS-F-serratus_M_contig1026:192912..1935421690962592.6148374-CDS-F-serratus_M_contig1026:192912..193542Fucus serratus maleCDSF-serratus_M_contig1026 192913..193542 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1026.322.1

>prot_F-serratus_M_contig1026.322.1 ID=prot_F-serratus_M_contig1026.322.1|Name=mRNA_F-serratus_M_contig1026.322.1|organism=Fucus serratus male|type=polypeptide|length=210bp
MLAQGRHLFQQSRERPQEEGYATRSRRQGGHGHHRQHGHHRRSLQLGRED
NDANQHHGRYIHATDFDGHFVYREEPTAHCCKTVRGAITTWLNVEDDLAV
LEAEIDMEIQAVENNFANLEVDSASSEDEDGDGRSESCIAPSLTEADVRS
RLKEVCYYLYPNGKNGEYRKTLYLPSRSVHSFIHKSRAKRKAREGRETQA
TLRDLWRNS*
back to top

mRNA from alignment at F-serratus_M_contig1026:186115..193542+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1026.322.1 ID=mRNA_F-serratus_M_contig1026.322.1|Name=mRNA_F-serratus_M_contig1026.322.1|organism=Fucus serratus male|type=mRNA|length=7428bp|location=Sequence derived from alignment at F-serratus_M_contig1026:186115..193542+ (Fucus serratus male)
ATGGAAATATTTCTTCCATCTGTTCGTGTGTCATCTGCATCTGGCACAAA
GCCATGCGGAGAACCTACATGCACCACGGTGACTGTGCCTGCCGGTCCCG
TGTACCAGTGCTCGTGCGATCGATAAATGCATGTTTTTTGCGGTCGCGGC
ATTGAGGAGGAAGGCTACGGGCAGCAGAGAGAGTGCACAGACTGCCAGAA
GAGTACCCCTGGCGATAAGACCGGCAGCTCCAGCAGTCCAGTGGAAGTAG
ATTGTGATGACGAGGTGGAGAACAACAGGTGGTTTTTGAATTCAGCAGAC
AGTTCATGAAACATCACACACGTGTTTGTGCATGCACAGCATCGGTTTTG
CTGCGGCTCCAATCTCATCAACGACACGGTTGCATCGCACGCCGCGATCC
AGCAGTCGCCGGCATCCTGACAACCAGAAAACGCCCTGCGGCATCTGTAC
ACATATCTAAAAAGTTGGTTCCGTCATACAAGGTACCTGCGGCATGGTGC
TGCTGTTTGTGTTTTAAATTAACATGTTGATTTTTGTACGCAGCACAACA
AACAAGTGAAAAGCGGCGGTGGCGGCAGCATGTTTTCTGCACTCTTATTT
TCTTTGGGGCACCAGTTTTTGTTTACTGCTCTGCACTGCTCTGCTCTGTG
GCAAACAAACAATTTACGTTTAAAAGGCTTCCATCGTTTGTGTTATTTTT
CCCTATTAATCACACTGTGTTCGAATGAGTGTGTGTGGTGCACACATAGA
CGACGCTCACTGTAGTACTGCATAGGTTTTGATCAGCAAAATAAGGAGCG
TAGTGTGTGGGCCAAACGTTTCCTTGACGCATTATACCCCCTTTGAATTT
AAAGTCCTGAAATGATCTTTTGTTTTTCACATACATGTGGCATTTATGTT
ATACCGCGTAGCACCACACAACCGTGTCGGAGCACGGAACAGCGGGCTCG
AGGCAAGGAGACACAGCGTGAAGCTGTCGCGGGGGCGGGCGGCAGCGCCG
CTACCGGGGGCGCCGCCACCGGCCCCGCCGTCAAGAAGTACAATGTGTCA
AAACCTGGTCCGTACACTGGCAAGAACAAGCTCAAACTAAACCAGCGATT
GCAGATCGTTCGGGAGGTCCAGTAAGGTGGGGTAAGGGCCAAGGTCGCGC
AGAAGTTCAACGTCGGCAAGTCCTACGGGACGAAGTTGATGAAGCTCGAA
GCTTTCGCTGAGCTTGAGTAAGCCCGAGACCTGCAGCTCAACCAGGAGGC
CCTTCACGCTCCAAAGTCGGTAAACGTGGAGCTCGACAAGCGTTTACTCG
AGTGGATCAAGATCGCACGAGAACGATTTGTGGTAAGAGTAGGCAATGGA
TAACATATTACATGATGTCTGTGGTGGTCGTGTGGCAGTCAGCGTACTCT
TTGTGTTCACGTATGCCTGCATCCTCCCCTCTCATTTTAGAAGCTGCATC
GTGCAGTCGCGTGCGTGGTTTCCGATACTACTGTAGCGTGTGTGGTTTCC
GATACTGTAGCGTCAATAGTTCGTGTGTCCAATTGAGCGGTTTATTGGCT
CGCCAATTTGAACGAAGAGCTTATCACGTTGAAACCGTTTCGCTTGCTTC
GTTTCTGTTTCGCAGAAAACGAAGATTGGGCTAAGTGGCATCATGATCCA
AACCCGCGCCACGAAGTTCGCGTCGGAGATGGGAATACAGTTCACGGCAA
GCAAAGGCTGACTCTATCGCTTCCTCGGCCGCTACGGCCTCAAGCACGTC
CACCTGCACGGGGAAGCTGGCGACGTGGACAAGGAAAAGGGACAGAGAAG
ATAGCGGAGATTCGAAAGAAGCTGGAGGAGTTTGACGTTGAGTTCATTTT
CAACATGGCTGAGACGGGACTCTTCTACCGCTGTTTCCCGCGGGGCAAGT
ATTTCACAAGGCAAGAGGACGCTGCTGGTGTCAACAGGAAAACCGCGCGG
GGTTTGAAGGCCATGTAGGCAAAAGACCGATGCACGGTTGTCACCTACTG
CAACACAACCGGCTCGCTCGTGGTGCCGCTAGCCGTCATCAGCACGTCGA
AACAAACGATGGTTATCCGACATGTGCGCAAACCACCCATCCCCTACTAC
GCCCAAGCAAGCGCTTGACTCGATTCATCCATCTGCCAGCGGTGGTTCGA
CGATGTCTTCGTCCGCTTAGTCACCAGCAAGACAGGGAGAAAGGGGGCCC
TCGTGTGGGATAACTGCGCAGGCCACATAATCCGGAACGACCATCAACAA
GTCATCATCCTCTTCTTACCTCCAAACGTCATGTCTGTCTGCCAGCCCTG
CGATCAGGGAATCTTGTTTGCCCTCAAGTGCCAGTACCAAACCGAGATGG
TAGCGAACCTGGCGGAACTCATCGAGGACTGGGACACCGTCCGTGCGCGC
AACATCCACAGATAAAATAATGACAGACTCGTGGTTACAAGGCGACTTGT
TTCCGTTTATTATTATAATTATTATAATTATTATAATTTCCGCACATAAG
TCCGATCTCTCGAGCCCGTGGTCACAGACGCAGGCTTCCCTTTCCATACC
ATCGCTACATACAAAAAAAAACAAATAAAAGAAGAGAAAGAGAGGAAAAA
ATAAAATAAAATAACAGACGAGAAAGCCCCCCCCGATCTGATCCGAGGGG
AGGGAAAATACCCGCCGCGCACATCCGAGAGACAAATAAATAACCAAGCA
AGACATACCAAGTGTCAAGACCACACGACTGCCGGAACCGTACGCGAGTC
GCTAAGCACACACCCTCACTCACCCGCTACTCTTCTGCGACATTTAAATC
GACATCATGGGAGCTCAAACGGCAAAGTAGCAAAACGTTCCCTTGCGTGG
CGGGCGTTGGTCTCGTTCACACGCTTGGTGGACTAGGCCGACATGAAGAC
TTCAGCCCCCGTCTCTACTTTGCGGTACCACTCAGGCGCATCTTGGGGTC
GATTCCGAAGGCAGTGCAGTATTCCGTGACACGATGTTCGAGGCGTTTCG
CAGGCTGGCCCCGTTTTCTCTTCCCCCCGACCATTTCGCCACGCATGACG
ATGTTGGGGAGGTGATTGTCGAGCATGCGCGCGATGCGGCCGGCGTCATG
GCGGATGCGCTTCATCACAGTAGCCTCAATGCACTCACAGTCAGTCCTGA
GGAGGACCTCGAGGTATGAGAGCATGTGGTAGTCAGGGGCGGCCCGCGTC
GAGGTGTAGGCATTGAGGCACCTCAGCAGCATTCCGCGGTGGGCTTCCCA
CAGCTTGTCGAAGTTGCCGGGCGAGAGAGTCCAGGTCACACAGCCGTAGA
GCATGACCTCGAGTACTTCCGCCTTCAGAAAACGGACCTTGTCTGCCACT
GCGATGTATGAGTTATCGTACACCGCCTTGCTGTACTTGAGGAGACAGTT
CCAGGCGTAGCCAGTCCGACGTTTGATCTCAGGGCCAACATCCCCAACGC
TGCTGATGGTGCTGCGAAGATACACGAAGGTGTCGACTTGGCTCTACCTT
TGCCCCGCGGGCTCCATGGCAACCGCTTCTGCCTGCATGGTGGGGGGGCG
CTTGCGCATGGTCACCGTCTTCCTTTCCGACACTATGAGACCGAACGCTG
CACAGACCTCGACGATGGCCATCATCATCTTTTCCAGGCTAGCCTGAGAT
CGCGAGGCGATGCCAGCGTCGTCGGTGTATAGCATGGCCCAGATCACCCT
CTTGGCTGCCTCCTTGGTCAGATCACCCCTTGCAATCACGCGCACAAAAT
CGTCCAGAACCGCCTTGTCGATGGAGAAACGGTCGAACGCCACCGTCAGC
ACCGCTACGAAGAAGATGTTGAACAATTCCGGGGCGATCACACAACCCTG
GCGGAGGCCCTGCTCGACGGCAAACCACTCTGACGTCTCGCCGCTGTCCA
GGCGCACGCACGCCCGCATGCCGTCATGGAACTGGCGGATGATGGAGATC
AGTTTGGCGGGGACGCCGTATCGTTCCAGCACCTTCCAGAGAAGAGAGCG
GTCTACCGAGTCGTATGCCTTCTGCAGGTCGATGAAGCACAAGAATAACG
GCAGGTCTTTCTCTCGGGCCAGCTCCTGGATCCCGCGCACAACGTAAATC
ATACCGTCTGTTGACGGGCCGACTCGGAAACCGTATTGCGCTTCGAGAAC
CATTTTTCTCCACTAGCAGTAGGCATTGAGACGCATCGCGACCACTTTTA
GAACCACCTTGCCTGCATGTGCCCCAAGCGATATGCTGCGGAAGTTGCCA
CACTCGTACGGGTCGCCCTTCTTGAAGAACACTGTGATGATGGCATCCTT
CCACTCCTGTTACAGCGACAACATTGTTGTGGAAACACTTCAGGATGGCG
GAGTTCTCGAAGAGACCGAGCTTCAGCAGTTCACCACAGACATTGTCGAC
GCCGACAGCCTTGTCGTTCCCGAGCTTGCCCACTGCCTCCTTCACCTCTT
CCATCGTGGGCTCGGCCGCAAGCGGGGCGTGTTCGGGCAACTGCTTGATG
CCGTCGAGGATAGAGGCGTCGAGCGTTGGCGATTTCGCGTTCAGGTGCTC
CTGGAACCACTCTTTCCACCGAAGTAGGATAGACGGCTTGTCCCGCAACA
ACATGCCAGAAGCATTCTTGATGTAAGTTGATTTGCATCCCCTCTTCCCT
TCCAGCTCCAACGACTTGACGTGCTGGTACAGTCCTGCCTGGTTCCTCTG
GCGAGTAAGGTCCGCGGTCCTGGCGGTGTACTCACGCAGGAAGCTCTGCA
GCTCCGCGTGCTTAGCCCGTTTGAACGCCTTGTTTGTCACCTTCAACGCC
TTCCTTAGACTTGGGTCCTGGGGGCGAGCACGCAGTTTCTCCCTCACGCG
TTCTCTGATGTCCCACGCCTGTCGGAGGCGTGCTTGGGCTCGTGGGGACT
CGCTGAAGCCTCTTGAGGAGGGGCGCTTTGGGTGGTGAGGGAGTGTGTCT
GCGGCTGTCTGGCGCAAGATGTCGGCGAACGTAGAGGCCATGGAGTTGAC
GCCTGGGATACCAGCGGCGAAGGTGGAGTCAGGGAGCCTGGTGACAATCT
TTTGCGCTACAATCGCCCCTAAGCACCGATCAGACGTAAGGAGGTTCCGG
TCGTAGGGTACCCCGTGGTGCCCTTTTTCCGGTCTCTGACGGCGGTTGGG
TACGTTCCGTCCTAGGAGGCGGATGGAAGCTGAAACCAGGCGATGGTCTG
ATTTCAGCTTCAGGTGGACAGTGATATTCCTGACAAGCCTGCGGTCATGC
TGGCGTACCAGGATGTAGTCCAGGCGCCAGCGATGGGATTCCTTCGGCCC
CTCGTACGTGAACGCATCCGAGCTTCCCCCACGTTTCGGCGTGCTGAAAA
AGGTGTTGACAATCGACAGCTTGTACTCGGCAGCACATGCTAGAAGTCGC
GACCCGTTGTCATTGAGAGTGTCTCTGCCGTATGGTCCCAAAACCTGGGC
ATCCCCTAGTCCGCCTCCCTCCCCCCTTCCTCCCGTACGGGCGTTAGCAT
CCATCATCAAAATCAAGTGCTCGCTGGCAGGCACCTCAGCAACAGTGCTA
CGAAGTTCTTTCCATAACTTAGACTTGTGATAGGTGGCTGCCGCTTCAGT
CGGAGCGTATCCAACGATGAAGGTTGTGGTGGTTCTATGTTTGAAGATCA
CCCTCACCTTCAGCAGCCGCGCACTGATGTGTTCCGGCACAATGCCATCT
GGGCCGAGTGCGCGAACGATAGACTCCCTGACAGCCAGACCAACTCCGAG
TGTTCCGGGCTTACCCCCATCACCATCGCAATGACCGTTGCAGTGCACGA
CGTAACCAGCGGCTGGTGCTTGGATGGTTGTCCTTCCATCGCGGCGAGTC
TCCTGTATGGCAATGAAATCGCACTCGTGCTTCGCAGCGAACATCAAAAG
ATCCTCCGCGTGCCCCGGGCCGTTGGTCCCTCTTTTGGACATGGTGCGGA
CGTTCCATGTGGCAACCATCAGCTCCTTCGAACGTGCTGCAGCCCTCGCC
TTCGAGCGAACCACACGGGCGTGTGCTCTGGCGGCACGTCGAGCCGGCCG
TCCTCTCCTCATTTTCTTCCTTCTCTCTAAGTCTCTCTTCGCTTGGTGAC
GAGCCCAAATCCACCTCTTTTTGGCTATTCTCTGTTTCCTCTCTCTCTCC
ATCCTACCCTGGTTCCTGCCTTATTGCTCCTGCACGGGTATCAGCGGTCC
CCGTGCACGTCGACCTCCACCAAGCCGACCTTAGTGCTTACACGCACGTT
GCTGCCTGCTACTAGAGCTGCGGCAGCAATGCTTTCGGCGGTGGTGATAA
CCCGAACGAGCTGCCCCCTCCACCAAGTGTGGCAGGGCGTGTTCCGAGGT
CACCACCATGGCATCTTTTTTAAAATTCCTTTAGATGTCGTGCGTTTTAA
CACACGAGAAAAAACGCACGGAAGTCAGGATGGCCTCTTGGAGCGATCCT
TTCTCCCCCGGGGTCCAAATAAGCCGGAAATGAGGAGGCTATATATATTG
ACAGTTTATTGGTGTTGGATCCTCTTGGTGTCGGATGCTCTGTTAGTGCT
TCGCTTTCCAACAGGAGTCCACACTGAAAATGCCTACTGATGCTTGTCAA
TCATGTGCATTCGCTCACACTAAAAATATCCACCTCCTGCATACCGCTCC
AATTGCTCTCCTATACCGGCGCCAATACTTTTGTTGTGGTTGGCAGGGGA
TGCCGAGGGCTGAGCGATGCAGGCCAGGCGATAATGCTGGAAGTCACTGA
GATCCTTCCCAAAAAGCGGGGAGGCTTCTCAACCCAGACAGTCATCCGAT
GTTGGCTCAAGGCCGGCATCTTTTCCAGCAATCACGAGAACGCCCTCAGG
AGGAAGGATATGCAACCCGATCGAGAAGACAAGGAGGACACGGCCATCAT
CGACAGCACGGCCACCATCGACGATCTTTGCAACTTGGTCGCGAAGATAA
CGATGCCAACCAGCATCACGGACGCTATATCCATGCCACGGATTTTGACG
GACATTTTGTGTATCGAGAAGAACCCACAGCTCACTGCTGCAAAACTGTG
CGTGGGGCGATTACGACGTGGCTCAACGTAGAGGACGACCTAGCCGTGTT
GGAAGCGGAGATAGATATGGAAATACAGGCTGTAGAGAACAACTTCGCCA
ACCTAGAGGTAGACTCCGCCTCGAGCGAAGACGAAGATGGCGACGGTAGG
TCAGAGTCGTGCATTGCCCCGTCGCTTACAGAGGCCGATGTCCGCTCTCG
CTTAAAAGAAGTTTGCTACTACTTGTACCCAAACGGAAAGAATGGTGAGT
ACCGCAAAACACTGTACCTTCCTTCAAGATCTGTGCATTCCTTCATTCAC
AAGTCTCGAGCCAAGCGTAAAGCTAGGGAAGGGAGGGAGACACAGGCAAC
TCTTCGCGATCTGTGGAGGAACTCCTAG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1026:186115..193542+

>mRNA_F-serratus_M_contig1026.322.1 ID=mRNA_F-serratus_M_contig1026.322.1|Name=mRNA_F-serratus_M_contig1026.322.1|organism=Fucus serratus male|type=CDS|length=1260bp|location=Sequence derived from alignment at F-serratus_M_contig1026:186115..193542+ (Fucus serratus male)
ATGTTGGCTCAAGGCCGGCATCTTTTCCAGCAATCACGAGAACGCCCTCA
GGAGGAAGGATATGCAACCCGATCGAGAAGACAAGGAGGACACGGCCATC
ATCGACAGCACGGCCACCATCGACGATCTTTGCAACTTGGTCGCGAAGAT
AACGATGCCAACCAGCATCACGGACGCTATATCCATGCCACGGATTTTGA
CGGACATTTTGTGTATCGAGAAGAACCCACAGCTCACTGCTGCAAAACTG
TGCGTGGGGCGATTACGACGTGGCTCAACGTAGAGGACGACCTAGCCGTG
TTGGAAGCGGAGATAGATATGGAAATACAGGCTGTAGAGAACAACTTCGC
CAACCTAGAGGTAGACTCCGCCTCGAGCGAAGACGAAGATGGCGACGGTA
GGTCAGAGTCGTGCATTGCCCCGTCGCTTACAGAGGCCGATGTCCGCTCT
CGCTTAAAAGAAGTTTGCTACTACTTGTACCCAAACGGAAAGAATGGTGA
GTACCGCAAAACACTGTACCTTCCTTCAAGATCTGTGCATTCCTTCATTC
ACAAGTCTCGAGCCAAGCGTAAAGCTAGGGAAGGGAGGGAGACACAGGCA
ACTCTTCGCGATCTGTGGAGGAACTCCTAGATGTTGGCTCAAGGCCGGCA
TCTTTTCCAGCAATCACGAGAACGCCCTCAGGAGGAAGGATATGCAACCC
GATCGAGAAGACAAGGAGGACACGGCCATCATCGACAGCACGGCCACCAT
CGACGATCTTTGCAACTTGGTCGCGAAGATAACGATGCCAACCAGCATCA
CGGACGCTATATCCATGCCACGGATTTTGACGGACATTTTGTGTATCGAG
AAGAACCCACAGCTCACTGCTGCAAAACTGTGCGTGGGGCGATTACGACG
TGGCTCAACGTAGAGGACGACCTAGCCGTGTTGGAAGCGGAGATAGATAT
GGAAATACAGGCTGTAGAGAACAACTTCGCCAACCTAGAGGTAGACTCCG
CCTCGAGCGAAGACGAAGATGGCGACGGTAGGTCAGAGTCGTGCATTGCC
CCGTCGCTTACAGAGGCCGATGTCCGCTCTCGCTTAAAAGAAGTTTGCTA
CTACTTGTACCCAAACGGAAAGAATGGTGAGTACCGCAAAACACTGTACC
TTCCTTCAAGATCTGTGCATTCCTTCATTCACAAGTCTCGAGCCAAGCGT
AAAGCTAGGGAAGGGAGGGAGACACAGGCAACTCTTCGCGATCTGTGGAG
GAACTCCTAG
back to top