mRNA_F-serratus_M_contig1022.302.1 (mRNA) Fucus serratus male
Overview
Homology
BLAST of mRNA_F-serratus_M_contig1022.302.1 vs. uniprot
Match: A0A6A3C767_HIBSY (NAC domain-containing protein 7-like n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3C767_HIBSY) HSP 1 Score: 63.2 bits (152), Expect = 2.060e-6 Identity = 65/251 (25.90%), Postives = 103/251 (41.04%), Query Frame = 1 Query: 979 SYNAVITALHREDKPEHVISTFREMELRGLCPDNFAACHCLMACGKLDDNPDA------------------------AAGMIRALWRLTDSLDER---LYNKAFSVLARGGNVKAIRGLLSEMEVRG-IEPTEGCYTSLISAYCKAERQDEAESALFDLKSRGKPIRTAAF-TSVISSFKQSKEANRALELFEEMKRGPPEALTAPNQYTYNAIIGVLTFSGRLEQATEKFKEMHEAGLEYDQLTFANMIL 1644 +YN +I A H P H +S F M G+ PD+F L AC +L DA + G + + D + ER ++ S A GL EM++ G ++P E S+ISA E + SR + RT + T++I + + + ++++F M N T+ +I L G E+A E F+EM EAGL+ D LTF ++++ Sbjct: 55 AYNTIIRA-HAHSSPSHAVSLFSTMRRDGVSPDHFTFPFVLKACARLHVGHDAHGLIIKLGLDSDIYVQNALISFYGSIGSVATALHVFDEMPERDLVSWSSMISCFANNNLGYEALGLFQEMQLAGNLKPDEVTMLSVISAVSSLGAL-ELGKWVDAYISRTQLNRTVSLGTAMIDMYSRCGSVDDSIKIFNGM--------AVKNILTWTVLINGLAVHGHGEEALEVFREMKEAGLKPDHLTFNSVLV 295
BLAST of mRNA_F-serratus_M_contig1022.302.1 vs. uniprot
Match: A0A4Y7LHU0_PAPSO (Uncharacterized protein n=2 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7LHU0_PAPSO) HSP 1 Score: 62.4 bits (150), Expect = 4.020e-6 Identity = 83/329 (25.23%), Postives = 129/329 (39.21%), Query Frame = 1 Query: 976 VSYNAVITALHREDKPEHVISTFREMELRGLCPDNFAACHCLMACGKLDDNPDAAAGMIRALWR-LTDS---LDERLYNKAFSVLARGGNVKAIRGLLSEMEVRGIEPTEGCYTSLISAYCKAERQDEAESALFDLKSRGKPIRTAAFTSVISSFKQSKEANR-ALELFEEMKRGPPEALTAPNQYTYNAIIGVLTFSGRLEQATEKFKEMHEAGLEYDQLTFANMILGFARQSRHSDVLVMFRGLEALTAASAPNGVWETRQKGYWACFNEALKACEAEGEWEMARRLLRSMRHQSMVLDVVA-YGACIGACARAGRWQEALSTLREM 1944 VS+ +I A D PE + F EM D L AC KL D + R L R ++D+ LD + N + + G+V + EM ++ + + SLI+ + EA + ++S G V++S AN ALEL E + P+ + NA++ + GR++QA+E FK M D ++ +MI+G A + L F E PNGV F L AC G + ++L + M + + YG + RAG EA+ +R M Sbjct: 198 VSWTTLIQAYANTDLPEEAVRAFLEMVETEFRADGKTMVIVLSACSKLKD-----LNLGRKLHRYMSDNKVNLDVFVGNALVDMYLKCGDVDFACKVFKEMPIKNVVS----WNSLIAGLTHQGKFKEALNVFRRMQSEGVKPDNVTLVGVLNSC-----ANLGALELGEWVHSYIGGNRIKPDGFIGNALVDMYAKCGRIDQASEVFKNMKRR----DVFSYTSMIVGLAMNGQGEKALEFFS--EMCVVGIKPNGV----------TFIGVLSACSHAGLVQEGKQLFKEMSSLYKIEPQMEHYGCLVDLLGRAGLIAEAIEFVRTM 496
BLAST of mRNA_F-serratus_M_contig1022.302.1 vs. uniprot
Match: A0A6A1US58_9ROSI (Uncharacterized protein n=1 Tax=Morella rubra TaxID=262757 RepID=A0A6A1US58_9ROSI) HSP 1 Score: 58.5 bits (140), Expect = 6.440e-5 Identity = 52/210 (24.76%), Postives = 93/210 (44.29%), Query Frame = 1 Query: 1252 LLSEMEVRGIEPTEGCYTSLISAYCKAERQDEAESALFDLKSRGKPIRTAAFTSVISSFKQSKEANRALELFEEMKRGPPEALTAPNQYTYNAIIGVLTFSGRLEQATEKFKEMHEAG-LEYDQLTFANMILGFARQSRHSDVLVMFRGLEALTAASAPNG-VWETRQKGYWACFNEALKACEAEGEWEMARRLLRSMRHQSMVLDVVAY 1875 LL EM + G+ + Y+SL+ AYC+A R E S L D + G + ++ + ++I S K+ AL LF+EMK ++ + + ++ G + +E+ E ++ + N+I F+R+ D + + +L APN + + GY A + ++ E GE + SM+ +LD V Y Sbjct: 431 LLDEMRLAGVRSSPSVYSSLLKAYCQANRAGEVASLLRDARKDGIQVDSSCYDALIQSRVLQKDTQGALHLFKEMKE---TKISRASHQEFGMLVKGCEEGGEAGLMAKLLREIKEGQTIDSGVHDWNNVIHFFSRKKLMQDAEKALKKMRSL--GHAPNAQTFHSMVTGYAAVGGKYVEVTELWGEMKSFASAT-SMKFDQELLDSVLY 634 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1022.302.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1022.302.1 >prot_F-serratus_M_contig1022.302.1 ID=prot_F-serratus_M_contig1022.302.1|Name=mRNA_F-serratus_M_contig1022.302.1|organism=Fucus serratus male|type=polypeptide|length=955bp MPRDADKRLPIEISLQVMKHLLGSKEHSRVIRLYRSLRVRRYIGQGSRAGback to top mRNA from alignment at F-serratus_M_contig1022:115584..142078+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1022.302.1 ID=mRNA_F-serratus_M_contig1022.302.1|Name=mRNA_F-serratus_M_contig1022.302.1|organism=Fucus serratus male|type=mRNA|length=26495bp|location=Sequence derived from alignment at F-serratus_M_contig1022:115584..142078+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1022:115584..142078+ >mRNA_F-serratus_M_contig1022.302.1 ID=mRNA_F-serratus_M_contig1022.302.1|Name=mRNA_F-serratus_M_contig1022.302.1|organism=Fucus serratus male|type=CDS|length=5730bp|location=Sequence derived from alignment at F-serratus_M_contig1022:115584..142078+ (Fucus serratus male)back to top |