mRNA_F-serratus_M_contig1022.301.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1022.301.1
Unique NamemRNA_F-serratus_M_contig1022.301.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1022.301.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1022contigF-serratus_M_contig1022:98866..99648 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size487
Cds size483
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928825.9106312-CDS-F-serratus_M_contig1022:98867..990921622928825.9106312-CDS-F-serratus_M_contig1022:98867..99092Fucus serratus maleCDSF-serratus_M_contig1022 98868..99092 -
1690962589.9496422-CDS-F-serratus_M_contig1022:98867..990921690962589.9496422-CDS-F-serratus_M_contig1022:98867..99092Fucus serratus maleCDSF-serratus_M_contig1022 98868..99092 -
1622928825.9229765-CDS-F-serratus_M_contig1022:99390..996481622928825.9229765-CDS-F-serratus_M_contig1022:99390..99648Fucus serratus maleCDSF-serratus_M_contig1022 99391..99648 -
1690962589.9639177-CDS-F-serratus_M_contig1022:99390..996481690962589.9639177-CDS-F-serratus_M_contig1022:99390..99648Fucus serratus maleCDSF-serratus_M_contig1022 99391..99648 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1022.301.1prot_F-serratus_M_contig1022.301.1Fucus serratus malepolypeptideF-serratus_M_contig1022 98868..99648 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1022.301.1

>prot_F-serratus_M_contig1022.301.1 ID=prot_F-serratus_M_contig1022.301.1|Name=mRNA_F-serratus_M_contig1022.301.1|organism=Fucus serratus male|type=polypeptide|length=161bp
ESSSTLSVCNEEGRREAVRSKAGSSASAAPVATSQDEHMVIIEDQAREIA
RLEDAFSKMQEDLDRMQEDVWIEAQQELFPQIADLEDKLRREKDATRKQR
VLLSRIRPVEAASRAAATVESARKQAAEQVETVCDQQAENIQEAEDEIRR
EQEKISRTEAA
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mRNA from alignment at F-serratus_M_contig1022:98866..99648-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1022.301.1 ID=mRNA_F-serratus_M_contig1022.301.1|Name=mRNA_F-serratus_M_contig1022.301.1|organism=Fucus serratus male|type=mRNA|length=783bp|location=Sequence derived from alignment at F-serratus_M_contig1022:98866..99648- (Fucus serratus male)
GAAAGCTCCTCAACCTTGTCAGTTTGCAACGAGGAGGGGAGGCGGGAAGC
GGTTCGTTCGAAGGCCGGATCTTCAGCGTCGGCTGCTCCGGTCGCGACAT
CGCAAGATGAGCACATGGTCATCATCGAAGACCAGGCGCGAGAGATCGCT
CGACTTGAGGATGCATTTTCTAAGATGCAAGAGGACTTGGACAGGATGCA
GGAAGACGTGTGGATCGAAGCCCAGCAAGAGCTTTTCCCGCAGATTGCTG
ATCTCGAGGTCAGTAGTGAGCTTGTGACGACACCAGCTGCGCAAGAGGTC
GTTTCATGTACAGAATATGTAGCTGGAGCGTGCTTGTGCTAGGGAAGAAC
TTGGAGCTTTCGGGCGGCAATAATCGTACTACGGTTTTGTGCGCATGGCC
CGCGCGCGCGTAACACTCTGAAGCTTTTTATTTTAGTCTCTACTCTCACA
AGATGTGTTACATCACGTTCTCGAGGTGAGCTTTTCAGCCTGCGTTTTTG
AGTGGCCCGCCTTGATACGACTGACCTTCGCTCCGTTTGGTCGACATCTT
TCACAGGATAAGCTGCGGCGGGAGAAAGACGCGACGCGCAAGCAGCGCGT
GCTCCTTTCCAGGATAAGACCGGTCGAGGCAGCCTCGAGAGCTGCGGCGA
CGGTTGAAAGCGCTCGGAAACAGGCCGCCGAGCAAGTCGAAACCGTCTGC
GACCAGCAGGCGGAGAACATCCAGGAGGCTGAGGACGAAATTCGTCGAGA
GCAGGAGAAAATATCTCGCACAGAGGCTGCGCT
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Coding sequence (CDS) from alignment at F-serratus_M_contig1022:98866..99648-

>mRNA_F-serratus_M_contig1022.301.1 ID=mRNA_F-serratus_M_contig1022.301.1|Name=mRNA_F-serratus_M_contig1022.301.1|organism=Fucus serratus male|type=CDS|length=966bp|location=Sequence derived from alignment at F-serratus_M_contig1022:98866..99648- (Fucus serratus male)
GAAAGCTCCTCAACCTTGTCAGTTTGCAACGAGGAGGGGAGGCGGGAAGC
GGTTCGTTCGAAGGCCGGATCTTCAGCGTCGGCTGCTCCGGTCGCGACAT
CGCAAGATGAGCACATGGTCATCATCGAAGACCAGGCGCGAGAGATCGCT
CGACTTGAGGATGCATTTTCTAAGATGCAAGAGGACTTGGACAGGATGCA
GGAAGACGTGTGGATCGAAGCCCAGCAAGAGCTTTTCCCGCAGATTGCTG
ATCTCGAGGAAAGCTCCTCAACCTTGTCAGTTTGCAACGAGGAGGGGAGG
CGGGAAGCGGTTCGTTCGAAGGCCGGATCTTCAGCGTCGGCTGCTCCGGT
CGCGACATCGCAAGATGAGCACATGGTCATCATCGAAGACCAGGCGCGAG
AGATCGCTCGACTTGAGGATGCATTTTCTAAGATGCAAGAGGACTTGGAC
AGGATGCAGGAAGACGTGTGGATCGAAGCCCAGCAAGAGCTTTTCCCGCA
GATTGCTGATCTCGAGGATAAGCTGCGGCGGGAGAAAGACGCGACGCGCA
AGCAGCGCGTGCTCCTTTCCAGGATAAGACCGGTCGAGGCAGCCTCGAGA
GCTGCGGCGACGGTTGAAAGCGCTCGGAAACAGGCCGCCGAGCAAGTCGA
AACCGTCTGCGACCAGCAGGCGGAGAACATCCAGGAGGCTGAGGACGAAA
TTCGTCGAGAGCAGGAGAAAATATCTCGCACAGAGGCTGCGGATAAGCTG
CGGCGGGAGAAAGACGCGACGCGCAAGCAGCGCGTGCTCCTTTCCAGGAT
AAGACCGGTCGAGGCAGCCTCGAGAGCTGCGGCGACGGTTGAAAGCGCTC
GGAAACAGGCCGCCGAGCAAGTCGAAACCGTCTGCGACCAGCAGGCGGAG
AACATCCAGGAGGCTGAGGACGAAATTCGTCGAGAGCAGGAGAAAATATC
TCGCACAGAGGCTGCG
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