mRNA_F-serratus_M_contig1022.300.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1022.300.1
Unique NamemRNA_F-serratus_M_contig1022.300.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1022.300.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1022contigF-serratus_M_contig1022:95675..98745 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size2052
Cds size1176
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1022.300.1prot_F-serratus_M_contig1022.300.1Fucus serratus malepolypeptideF-serratus_M_contig1022 96481..98675 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928825.807937-UTR-F-serratus_M_contig1022:95674..964801622928825.807937-UTR-F-serratus_M_contig1022:95674..96480Fucus serratus maleUTRF-serratus_M_contig1022 95675..96480 -
1690962589.9036908-UTR-F-serratus_M_contig1022:95674..964801690962589.9036908-UTR-F-serratus_M_contig1022:95674..96480Fucus serratus maleUTRF-serratus_M_contig1022 95675..96480 -
1622928825.8755095-UTR-F-serratus_M_contig1022:98675..987451622928825.8755095-UTR-F-serratus_M_contig1022:98675..98745Fucus serratus maleUTRF-serratus_M_contig1022 98676..98745 -
1690962589.938-UTR-F-serratus_M_contig1022:98675..987451690962589.938-UTR-F-serratus_M_contig1022:98675..98745Fucus serratus maleUTRF-serratus_M_contig1022 98676..98745 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928825.8240895-CDS-F-serratus_M_contig1022:96480..966071622928825.8240895-CDS-F-serratus_M_contig1022:96480..96607Fucus serratus maleCDSF-serratus_M_contig1022 96481..96607 -
1690962589.9118233-CDS-F-serratus_M_contig1022:96480..966071690962589.9118233-CDS-F-serratus_M_contig1022:96480..96607Fucus serratus maleCDSF-serratus_M_contig1022 96481..96607 -
1622928825.8389769-CDS-F-serratus_M_contig1022:96941..979351622928825.8389769-CDS-F-serratus_M_contig1022:96941..97935Fucus serratus maleCDSF-serratus_M_contig1022 96942..97935 -
1690962589.922238-CDS-F-serratus_M_contig1022:96941..979351690962589.922238-CDS-F-serratus_M_contig1022:96941..97935Fucus serratus maleCDSF-serratus_M_contig1022 96942..97935 -
1622928825.858026-CDS-F-serratus_M_contig1022:98620..986751622928825.858026-CDS-F-serratus_M_contig1022:98620..98675Fucus serratus maleCDSF-serratus_M_contig1022 98621..98675 -
1690962589.9300094-CDS-F-serratus_M_contig1022:98620..986751690962589.9300094-CDS-F-serratus_M_contig1022:98620..98675Fucus serratus maleCDSF-serratus_M_contig1022 98621..98675 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1022.300.1

>prot_F-serratus_M_contig1022.300.1 ID=prot_F-serratus_M_contig1022.300.1|Name=mRNA_F-serratus_M_contig1022.300.1|organism=Fucus serratus male|type=polypeptide|length=392bp
MRVKAELESLRKDNCRLQEMLTIAEAEVSTVEMNMSTASCERSLVDAHPY
RFSVSAAAGAQSLVTTKEGGDSEGNMESTGDSGGDGDDGDREVALQNPGA
NRSSTPESPGERGVGEALMPRRESCLEDERDLIGGESTGRGSSHGLVPGD
AINEVVHDKDFPTCFDGATLTETCDPAKDGGTTASLPQALPCSASGGGSR
REGGASNTAIDPDQEVKASESLPEGPRNAHPELKEPHGRALPSGRPVRMT
RSKLRQPLGSLQSTRMDLNRGGRGLAARAVPAGGRGKGKRKAMGPRDVSS
DVDDVVMEEEESPRTKRKREMKEKVEREKKMKLQEAARSREETRRCRQAR
EEAMLSKPKAVVVAVNKKQGGIADKGNEIAKARRSGRRRGK*
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mRNA from alignment at F-serratus_M_contig1022:95675..98745-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1022.300.1 ID=mRNA_F-serratus_M_contig1022.300.1|Name=mRNA_F-serratus_M_contig1022.300.1|organism=Fucus serratus male|type=mRNA|length=3071bp|location=Sequence derived from alignment at F-serratus_M_contig1022:95675..98745- (Fucus serratus male)
GGAAAGGGTCGAGCTTGGTGAGGCGCTCGCCGCAAAGACTGCGTGCGCCG
AATCCCTAGAAGAAGAAAACATGAGGGTGAAGGCCGAGCTTGAATCTCTG
CGCAAGGATAACTGTCGTCTTCAAGGTGAGGTGACTAGCGAGCATCGCAG
GACGAGAGTCCTCGTGGCACGGTAGTTTGATTTGAGTTGAGGGATTAGGA
TCAGCTCGACCCGTCTTTCCCGACAGTTGTATCAGATATTGCCTCTCCAG
ACCCCGCGTCAAATCGAAGCACGCGTAATGCATAGACTAGCCTTACAAGC
CTAATAAATATTGATAGGAGGCGTGCCCAGCGCTGGCGGGTCATATAGTA
TATTATATTATATTATATTAATAGTATAATGTAGTATAGTATAGTTATAC
CAAACCCCTTCGTGAAGTTCAAAACTCCCGTGTTTTTATGGTCGAAAGCC
ATAATCCTTTGTTATTGCTGTATACAGTATACATTATATTTTTTGTGAAG
ACTGACTTGGCACTAATCATACCAAGTATTTACTGTTGCTACCGCCGAAG
TGTTACTACCAGTATAAAGTACCAGGTCTGGAAGCCGTTTTCGAGTGTAA
AATGTCACGGTTGCTGCGGTAAATCCCCGCAATCTACCGGTACCCTTTGG
CCAGGCTTTTTCGTGGCCTCCCCCACGTACCTACCTGTCTTATCGAATCC
TGATTCTCGACACCTTTTTGTTTTCTGCTATTCCGCTGCTATCTGAAACC
TTCGCCGCACGGGTTCTTTGTTGCTATTGTACTATGAATACTTGCACGAC
AAAACAACAGAAATGCTTACCATTGCGGAAGCTGAGGTGAGCACGGTTGA
GATGAACATGTCCACGGCCTCCTGCGAGAGAAGCCTCGTTGATGCCCACC
CGTACCGTTTTTCGGTAAGTGCCGCCGCTGGCGCCCAATCGTTGGTCACG
ACTAAGGAAGGTGGTGATTCCGAGGGCAACATGGAGAGTACGGGTGATTC
GGGTGGCGATGGTGATGACGGCGATAGGGAAGTCGCTCTCCAAAACCCCG
GGGCTAACCGTTCCTCTACACCGGAAAGTCCCGGAGAGAGAGGAGTCGGG
GAGGCGCTGATGCCGCGTCGTGAGTCATGCCTCGAGGACGAACGTGACCT
TATCGGGGGTGAAAGCACGGGAAGAGGCAGCAGTCACGGGTTGGTCCCCG
GAGACGCAATCAATGAGGTCGTCCATGACAAGGACTTTCCTACCTGCTTT
GACGGCGCAACACTCACAGAAACGTGCGACCCAGCTAAAGATGGAGGCAC
TACAGCATCGTTACCACAAGCGTTGCCTTGCTCTGCCAGTGGTGGGGGAT
CAAGGCGCGAAGGGGGCGCGAGTAATACCGCTATCGATCCAGACCAAGAG
GTGAAAGCCTCGGAATCTCTTCCGGAGGGCCCCCGGAATGCACACCCGGA
GTTAAAGGAACCCCACGGTCGCGCTCTCCCTAGTGGCCGGCCTGTGAGGA
TGACGCGCTCCAAGCTTCGGCAGCCGCTTGGGAGCCTGCAGTCGACCAGG
ATGGACCTGAATCGTGGAGGAAGGGGATTGGCAGCGAGGGCGGTTCCGGC
GGGGGGTAGGGGCAAAGGAAAACGGAAGGCAATGGGCCCCCGAGACGTGA
GCAGCGATGTCGACGATGTTGTGATGGAGGAGGAGGAATCGCCTCGCACT
AAGAGGAAAAGGGAGATGAAGGAGAAGGTCGAGCGCGAGAAGAAGATGAA
GCTTCAGGAAGCCGCCCGGTCGAGGGAGGAGACTCGTCGCTGCAGACAAG
CAAGGTGCGTGCGACTTGTTGGTATTTTAGCGAGGAATTGGGCGAGCGTG
CTGAGCCCGACGGCGTACGAGGGTTTTGTGTTTCAGTGTCATTTGTGCGG
AGTTGCCGAGAAGACTTGTCGCTGCAGAAAGACAAGGTGCGTGCGACATT
TGGAGGTTTTAGTAAGAGGTTGGGCGCGTGTGATGTGCCCGACGGCGTAC
GAGGGTTTTGTGTTTCGCCAGTGTGTCGTTGGTGTGAAGTTGCCGCCGAG
AAAGATTCTGAGAAACGCTATTTTTTAACAATTGCACCGTCGTGCTTGTG
ATGTTGATTCTATTGGGTATCCGCTCGCATGGACGCAGGGAAGAAGCGAT
GCTGTCGAAGCCGAAGGCGGTGGTCGTCGCAGTCAACAAGAAGCAAGGGG
GTATCGCCGACAAGGGTAACGAGATCGCCAAGGCGAGGCGTTCCGGTCGC
CGCAGGGGTAAATGAAACACGGCTTTTTATGTATTGGTATTCTTACGCGC
GCTATACTTTTAGTTCGGAGGCTACTTTCTTAGGTGGGCGAAGGAAGCCA
TTAGGCAGATATTACGGCGGATACTCATCTATCTAATTGTTTTGTATAGA
TTTGTAGGCTGCGTTGTCTTAGTGAGTGCGACACAGATTGATGGACAGTC
ATGCGTTCTATTCGCGCGTTAAGGTAATGCTCAATCGCCGGTGACAATGA
AAGGTAGATGAGATAGGTCGGCGAAACATTTCCTTGCCTTCCGCCGATGG
AAACACGTTGCACGCTTGGAGAAGTAGTCAATTGACGCTTTCTCGTCCCC
GCGGCGACGTGACGCTACTGGTTGTTTGTGCTCATGGCATCCTGAGCGGG
AATGTTGTAGTTCTGTAAAGATGTTGGAGGGGTTACTAGTGTAGTTGTTG
TGCAGTCGAAAAACGCCACCCACCTGGATCATACAGTAGTAGTTCTAAAA
GTGAGGGTAGGGCCCACTAAGAACACGTCGCCCAGGAGGCATACAAGTAG
ATCTATACTTCATATCTTTATATTTTTGGGGGCAGGAGGGGTTGGTACAC
AATTAAGTCAAGGCAAAAGGTGAACGTGCCCCAAAACCTCTTGACGGTTT
ACCTGGCCTTACGGTAGCTGCGTCATGCGACGACGTGCTTGGCGGTTACT
GTCTGTACAATGGAGATGACGTAATCGTAGTGTAACTGTAATGTAGGGTT
ATAACAGTAAGCAATGGTCCACGATGCCGTGAAGTAAAGTCCGCTTAGGA
TAGCCCGGTATAGCCCGGTAT
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Coding sequence (CDS) from alignment at F-serratus_M_contig1022:95675..98745-

>mRNA_F-serratus_M_contig1022.300.1 ID=mRNA_F-serratus_M_contig1022.300.1|Name=mRNA_F-serratus_M_contig1022.300.1|organism=Fucus serratus male|type=CDS|length=2352bp|location=Sequence derived from alignment at F-serratus_M_contig1022:95675..98745- (Fucus serratus male)
ATGAGGGTGAAGGCCGAGCTTGAATCTCTGCGCAAGGATAACTGTCGTCT
TCAAGATGAGGGTGAAGGCCGAGCTTGAATCTCTGCGCAAGGATAACTGT
CGTCTTCAAGAAATGCTTACCATTGCGGAAGCTGAGGTGAGCACGGTTGA
GATGAACATGTCCACGGCCTCCTGCGAGAGAAGCCTCGTTGATGCCCACC
CGTACCGTTTTTCGGTAAGTGCCGCCGCTGGCGCCCAATCGTTGGTCACG
ACTAAGGAAGGTGGTGATTCCGAGGGCAACATGGAGAGTACGGGTGATTC
GGGTGGCGATGGTGATGACGGCGATAGGGAAGTCGCTCTCCAAAACCCCG
GGGCTAACCGTTCCTCTACACCGGAAAGTCCCGGAGAGAGAGGAGTCGGG
GAGGCGCTGATGCCGCGTCGTGAGTCATGCCTCGAGGACGAACGTGACCT
TATCGGGGGTGAAAGCACGGGAAGAGGCAGCAGTCACGGGTTGGTCCCCG
GAGACGCAATCAATGAGGTCGTCCATGACAAGGACTTTCCTACCTGCTTT
GACGGCGCAACACTCACAGAAACGTGCGACCCAGCTAAAGATGGAGGCAC
TACAGCATCGTTACCACAAGCGTTGCCTTGCTCTGCCAGTGGTGGGGGAT
CAAGGCGCGAAGGGGGCGCGAGTAATACCGCTATCGATCCAGACCAAGAG
GTGAAAGCCTCGGAATCTCTTCCGGAGGGCCCCCGGAATGCACACCCGGA
GTTAAAGGAACCCCACGGTCGCGCTCTCCCTAGTGGCCGGCCTGTGAGGA
TGACGCGCTCCAAGCTTCGGCAGCCGCTTGGGAGCCTGCAGTCGACCAGG
ATGGACCTGAATCGTGGAGGAAGGGGATTGGCAGCGAGGGCGGTTCCGGC
GGGGGGTAGGGGCAAAGGAAAACGGAAGGCAATGGGCCCCCGAGACGTGA
GCAGCGATGTCGACGATGTTGTGATGGAGGAGGAGGAATCGCCTCGCACT
AAGAGGAAAAGGGAGATGAAGGAGAAGGTCGAGCGCGAGAAGAAGATGAA
GCTTCAGGAAGCCGCCCGGTCGAGGGAGGAGACTCGTCGCTGCAGACAAG
CAAGAAATGCTTACCATTGCGGAAGCTGAGGTGAGCACGGTTGAGATGAA
CATGTCCACGGCCTCCTGCGAGAGAAGCCTCGTTGATGCCCACCCGTACC
GTTTTTCGGTAAGTGCCGCCGCTGGCGCCCAATCGTTGGTCACGACTAAG
GAAGGTGGTGATTCCGAGGGCAACATGGAGAGTACGGGTGATTCGGGTGG
CGATGGTGATGACGGCGATAGGGAAGTCGCTCTCCAAAACCCCGGGGCTA
ACCGTTCCTCTACACCGGAAAGTCCCGGAGAGAGAGGAGTCGGGGAGGCG
CTGATGCCGCGTCGTGAGTCATGCCTCGAGGACGAACGTGACCTTATCGG
GGGTGAAAGCACGGGAAGAGGCAGCAGTCACGGGTTGGTCCCCGGAGACG
CAATCAATGAGGTCGTCCATGACAAGGACTTTCCTACCTGCTTTGACGGC
GCAACACTCACAGAAACGTGCGACCCAGCTAAAGATGGAGGCACTACAGC
ATCGTTACCACAAGCGTTGCCTTGCTCTGCCAGTGGTGGGGGATCAAGGC
GCGAAGGGGGCGCGAGTAATACCGCTATCGATCCAGACCAAGAGGTGAAA
GCCTCGGAATCTCTTCCGGAGGGCCCCCGGAATGCACACCCGGAGTTAAA
GGAACCCCACGGTCGCGCTCTCCCTAGTGGCCGGCCTGTGAGGATGACGC
GCTCCAAGCTTCGGCAGCCGCTTGGGAGCCTGCAGTCGACCAGGATGGAC
CTGAATCGTGGAGGAAGGGGATTGGCAGCGAGGGCGGTTCCGGCGGGGGG
TAGGGGCAAAGGAAAACGGAAGGCAATGGGCCCCCGAGACGTGAGCAGCG
ATGTCGACGATGTTGTGATGGAGGAGGAGGAATCGCCTCGCACTAAGAGG
AAAAGGGAGATGAAGGAGAAGGTCGAGCGCGAGAAGAAGATGAAGCTTCA
GGAAGCCGCCCGGTCGAGGGAGGAGACTCGTCGCTGCAGACAAGCAAGGG
AAGAAGCGATGCTGTCGAAGCCGAAGGCGGTGGTCGTCGCAGTCAACAAG
AAGCAAGGGGGTATCGCCGACAAGGGTAACGAGATCGCCAAGGCGAGGCG
TTCCGGTCGCCGCAGGGGTAAATGAGGAAGAAGCGATGCTGTCGAAGCCG
AAGGCGGTGGTCGTCGCAGTCAACAAGAAGCAAGGGGGTATCGCCGACAA
GGGTAACGAGATCGCCAAGGCGAGGCGTTCCGGTCGCCGCAGGGGTAAAT
GA
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