mRNA_F-serratus_M_contig1022.298.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1022.298.1 vs. uniprot
Match: UPI0012DFFDDA (DUF4954 family protein n=1 Tax=Spirochaeta lutea TaxID=1480694 RepID=UPI0012DFFDDA) HSP 1 Score: 338 bits (867), Expect = 4.080e-103 Identity = 207/519 (39.88%), Postives = 278/519 (53.56%), Query Frame = 3
Query: 171 RGLTTEEVRALERHGNWATDWSLVRV-PDGHIPVERIRGCIFHGAVQLGSLQGVVS---LPGGEHCPHPCGVYNSTLAACVVGDGALIKGCSSIXXXXXXXXXXXXXXXLISCSKPRTSTHRGCRFANGLAVKVGPETGGRELACYVTMRLAEAAVAVTDRSSSRAVAEQ-RAEVDAYAELASCEATVIGADAVVMSCPRVVDVFVGTKALLQSCT-VEEATILSTSEEPSRVRNGSTVTSSLLQEGVSVXXXXXXXXXXXXXHSHVDNHGKLTHSILGPDSGIGAGECHHCLLGPFVGFHHQSLLIAAVWPHGRGNVAYGANVGSNHTSRQADQEIWPGEGVFFGLSSIIKFPANYSESPFSIVASGVACLPQRVAFPFCLINSPERSFLGVPSALNHLRPGWVLTESMYTIVRNEDKYRRRAKARRNRVDWPIFRPSTVRLMADARARLVAAGGGKEEIYVGDHDAEDVXXXXXXXXXXXXXXXXXNFMTEGSRREGIAAYTLHLRRYALRGLLSRL 1709
R L EE+R L GN A DWS VRV PD + V +RG F G V LG G + +PGG P GVY STLA C +G + + C + L+S S R+S + NG+ + +G E GGR + + + L E A V DR V + A VD Y T++ A V+ + D ++G A + C +EEATILST +P+ V S + S++QEGVSV HS+V HGK+ H+I+GP+SG+ GE +GPFVGFHHQSLLIA WP GRGN+ YGANVGSNHTSR DQE WPGEG+FFGLSS+IK+PANY E+P++I+A+GV LPQ+++FPF LIN P +L VP N+L P W LT+++Y++ RNE KY+ R KA+RN D +FRP + M A L E + N MT+ +R + I AY + +L+ + R+
Sbjct: 52 RELRDEEIRLLREQGNSAEDWSAVRVHPDFN--VLSVRGNQFFGRVYLGVFSGAMHAYPVPGGV-VSLPQGVYGSTLADCRIGSASAVHRCPMLQGVRTGREV------LLSNSSLRSSG--ATIYGNGIEIPIGVEIGGRPVRIFADLSL-ELAQFVLDRPGDALVQDDFNALVDRYCSRIQGHCTIVDDYAAVLDARHIQDAYIGPHAWVHQCDCIEEATILSTPADPTEVGPSSVIRRSIIQEGVSVDTGALVFDSMLFEHSYVTEHGKVQHTIVGPNSGVSLGEATASFMGPFVGFHHQSLLIANYWPGGRGNIGYGANVGSNHTSRMPDQECWPGEGMFFGLSSVIKYPANYREAPYTIIAAGVTTLPQKISFPFSLINEPVAYYLEVPPGFNNLIPAWGLTDNLYSLKRNEGKYKARNKAKRNHFDLTLFRPEIIAYMRKAVEYL-----------------ESITERKTIYLPKDIPGLGKNMMTDVNRLKAIEAYRFFITLASLKAMRDRI 541
BLAST of mRNA_F-serratus_M_contig1022.298.1 vs. uniprot
Match: A0A3A4ZIU2_9BACT (DUF4954 family protein n=1 Tax=Candidatus Latescibacteria bacterium TaxID=2053570 RepID=A0A3A4ZIU2_9BACT) HSP 1 Score: 338 bits (866), Expect = 7.480e-103 Identity = 207/519 (39.88%), Postives = 280/519 (53.95%), Query Frame = 3
Query: 159 GSHGRGLTTEEVRALERHGNWATDWSLVRVPDGHIPVERIRGCIFHGAVQLGSLQG-VVSLPGGEHCPHPCGVYNSTLAACVVGDGALIKGCSSIXXXXXXXXXXXXXXXLISCSKPRTSTHRGCRFANGLAVKVGPETGGRELACYVTMRLAEAAVAVTDRSSSRAVAEQRAE-VDAYAELASCEATVIGADAVVMSCPRVVDVFVGTKALLQSCT-VEEATILSTSEEPSRVRNGSTVTSSLLQEGVSVXXXXXXXXXXXXXHSHVDNHGKLTHSILGPDSGIGAGECHHCLLGPFVGFHHQSLLIAAVWPHGRGNVAYGANVGSNHTSRQADQEIWPGEGVFFGLSSIIKFPANYSESPFSIVASGVACLPQRVAFPFCLINSPERSFLGVPSALNHLRPGWVLTESMYTIVRNEDKYRRRAKARRNRVDWPIFRPSTVRLMADARARLVAAGGGKEEIYVGDHDAEDVXXXXXXXXXXXXXXXXXNFMTEGSRREGIAAYTLHLRRYALRGLLSR 1706
G R L+ E+ LE GN ++DW V V +G R+ G FHG LG+++G V+L G P GVY ST+ +GDG L+ G + + ++ S R C F NG + +G ETGGRE+ Y + + AA AV R RA E E V AY E + ++ VV RV D +VG A + T V+ T+L EEP+ VR+G+ +S LQ G HSHV+ HGK+T SI+GP++G+ G FVGFHHQ++LIAAVWP G+GNVAYGAN+GSNHTS+ DQEI GEG+FFGL +KFP++++E+P+S++A+ V LPQR+ FPF L+N P R+F GVP A N + PGWVL + +Y ++RNE KY++R KARR + +FR V M AR RL A E+Y D D + NFM E SRR GI Y + +AL+GL +R
Sbjct: 36 GDRVRPLSAAEIAELESRGNRSSDWGRVLVEEG-FTTARVAGSAFHGDCVLGAMKGGSVALGNGVSLPD--GVYGSTIVDSEIGDGCLVSGAALVSNYVLKGNCVVFDTGTLAAS-------RTCVFGNGREIAIGIETGGREVLSYAEITIPVAA-AVATRRGDRAFQEAYREFVKAYVESCAAPFGIVERGGVVRRSARVEDTYVGENASIDGATLVQNCTLLGAPEEPTVVRDGAYARNSCLQYGCEAASMAIVDDSVLTEHSHVERHGKVTQSIVGPNTGVAEGXXXXXXXXXFVGFHHQAMLIAAVWPEGKGNVAYGANIGSNHTSKAPDQEIRCGEGLFFGLGVNVKFPSDFTEAPYSLIATAVDTLPQRLEFPFSLVNRPARTFDGVPLAYNEIFPGWVLADDLYLVLRNEGKYKKRNKARRTSFVFDVFRRDVVEKMIAARDRLKNAA--PREVYT-DADVPGLGK---------------NFMLEASRRRGIETYGFFIEYFALQGLAAR 525
BLAST of mRNA_F-serratus_M_contig1022.298.1 vs. uniprot
Match: A0A8K1C3D3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C3D3_PYTOL) HSP 1 Score: 338 bits (866), Expect = 7.690e-103 Identity = 202/515 (39.22%), Postives = 279/515 (54.17%), Query Frame = 3
Query: 177 LTTEEVRALERHGNWATDWSLVRVP--DGHIPVERIRGCIFHGAVQLGSLQGVVSLPGGEHCPHPCGVYNSTLAACVVGDGALIKGCSSIXXXXXXXXXXXXXXXLISCSKPRTSTHRGCRFANGLAVKVGPETGGRELACYVTMRLAEAAVAVTDRSSSRAVAEQRAEVDAYAELASCEATVIGADAVVMSCPRVVDVFVGTKALLQSCTVEEATILSTSEEPSRVRNGSTVTSSLLQEGVSVXXXXXXXXXXXXXHSHVDNHGKLTHSILGPDSGIGAGECHHCLLGPFVGFHHQSLLIAAVWPHGRGNVAYGANVGSNHTSRQADQEIWPGEGVFFGLSSIIKFPANYSESPFSIVASGVACLPQRVAFPFCLINSPERSFLGVPSALNHLRPGWVLTESMYTIVRNEDKYRRRAKARRNRVDWPIFRPSTVRLMADARARLV-AAGGGKEEIYVGDHDAEDVXXXXXXXXXXXXXXXXXNFMTEGSRREGIAAYTLHLRRYALRGLLSRLK 1712
L+T+E+ L+RHGN A W VR D HI RIR C F G V LG + G P G Y STL +V D AL+K ++I I+C+K F NG+ + VG E GGR+L + + A +R+ + + E V Y + T++ A ++ CPRV F+G+ A+++ V ++ILST EPSRVR S V S++Q V SHV HG + S+LGP++ I GE C +GPFVGFHHQ+LLIA+ WP G+GNV YGANVGSNHT + DQE++PGEGVFFGL +KFP+N++++P+S++A+GVA LPQ V PF LIN+ + + A+N + PGWVL +S++T++RNE K+ R K++R V IFRP V+ M +AR RL AAG K + G+ D N+M E SR E I+AYT + +AL GLL L+
Sbjct: 41 LSTQEIEKLKRHGNTAEQWENVRKTRMDAHIAASRIRDCHFQGKVVLGLFDRDHEVDG---VTFPSGCYRSTLKNVLVLDNALVKDTTAISNAIVDAHASVIACGSITCAKKTA-------FGNGVTLSVGVEIGGRDLRVFAELPFDVAREIAGNRADTNLLEEYNEFVQQYTSKVTSRFTLVSRHARLLRCPRVDASFIGSFAVVEDSDVHGSSILSTQSEPSRVRCKSIVRDSIVQWNSVVEDLSFVERGFLCDASHVGRHGIVMSSLLGPNTSIAEGEVTSCFVGPFVGFHHQALLIASYWPEGKGNVGYGANVGSNHTLKAPDQELFPGEGVFFGLGCCVKFPSNFTKAPYSVIATGVATLPQSVEMPFALINTAGHNIPALSPAINEISPGWVLAQSVFTVLRNESKFATRNKSKRTSVSAAIFRPEIVQYMTEARKRLGDAAGKAKIALLSGEAIYTD----------RQVAGLGKNYMREASRVEAISAYTFFIHMFALDGLLQWLE 535
BLAST of mRNA_F-serratus_M_contig1022.298.1 vs. uniprot
Match: A0A849ZQK4_9BACT (DUF4954 family protein n=1 Tax=Candidatus Sumerlaeia bacterium TaxID=2715255 RepID=A0A849ZQK4_9BACT) HSP 1 Score: 336 bits (862), Expect = 2.220e-102 Identity = 199/514 (38.72%), Postives = 283/514 (55.06%), Query Frame = 3
Query: 159 GSHGRGLTTEEVRALERHGNWATDWSLVRVPDGHIPVERIRGCIFHGAVQLGSLQGVVSLPGGEHCPHPCGVYNSTLAACVVGDGALIKGCSSIXXXXXXXXXXXXXXXLISCSKPRTSTHRGCRFANGLAVKVGPETGGRELACYVTMRLAEAAVAVTDRSSSRAVAEQRAEVDAYAELASCEATVIGADAVVMSCPRVVDVFVGTKALLQ-SCTVEEATILSTSEEPSRVRNGSTVTSSLLQEGVSVXXXXXXXXXXXXXHSHVDNHGKLTHSILGPDSGIGAGECHHCLLGPFVGFHHQSLLIAAVWPHGRGNVAYGANVGSNHTSRQADQEIWPGEGVFFGLSSIIKFPANYSESPFSIVASGVACLPQRVAFPFCLINSPERSFLGVPSALNHLRPGWVLTESMYTIVRNEDKYRRRAKARRNRVDWPIFRPSTVRLMADARARLVAAGGGKEEIYVGDHDAEDVXXXXXXXXXXXXXXXXXNFMTEGSRREGIAAYTLHLRRYALRGL 1697
G R LT +E+ L+ H A DW+ V V DG P G F G V LG+ V + G+ P GVY + + +G+ ALI + +++C++ + G F NG V + ETGGRE+ Y + + AA + R +A A V+ Y A IG A V S ++++ F+ + +E AT+LS + E + + +G+ V +SL+Q G V HSHV+ HGK+T SI+GP++GI GE CL+GPFVGFHHQ+LLIAA WP G+GN+ YGANVGSNHT + DQEIWPGEG FFGL IK PA+++ +P+S++A+ V LPQRV PF LIN+P G+ A N + PGWVL+++++ + RNE KY +R KA+R ++ + +FRP + LM +AR RL AA G +E+Y D + + + N+MTE +R+ GI AYT +LR YAL GL
Sbjct: 39 GDKVRALTPQEIERLKAHSCSAEDWAAVLVADGFNPAF-FWGTHFMGTVVLGAFGAPVKM--GQGVTMPSGVYKAVVVNSEIGNNALIHNVGLLSNTVVDEGAA-----VVTCAE--IAAEPGTAFGNGREVGIAIETGGREVKLYAEITVEVAAKIASSRGDKELLAAYGAFVEEYVAKAKSPKGYIGKGASVKSTGKIINAFLXXXXXXXXALKIENATVLSAAGEATEISDGAFVRNSLVQWGCEVTSMAIVDKSALCEHSHVERHGKVTESIVGPNTGIAEGEVTACLVGPFVGFHHQALLIAAFWPEGKGNIGYGANVGSNHTGKAPDQEIWPGEGTFFGLGCNIKMPADFTRAPYSLIATAVNALPQRVEMPFSLINTPAERIDGISPAYNEIMPGWVLSDNIFAVKRNEGKYAKRNKAKRAKIVFEVFRPEIIDLMIEARKRLQAATG--KEVYT-DKEVKGLGK---------------NYMTEVARKRGIEAYTFYLRYYALCGL 524
BLAST of mRNA_F-serratus_M_contig1022.298.1 vs. uniprot
Match: A0A7C0XTT9_9BACT (DUF4954 family protein n=2 Tax=Bacteria TaxID=2 RepID=A0A7C0XTT9_9BACT) HSP 1 Score: 335 bits (859), Expect = 4.440e-102 Identity = 198/533 (37.15%), Postives = 288/533 (54.03%), Query Frame = 3
Query: 117 LRKIDLARKVFGTLGSHGRGLTTEEVRALERHGNWATDWSLVRVPDGHIPVERIRGCIFHGAVQLGSLQGVVSLPGGEHCPHPCGVYNSTLAACVVGDGALIKGCSSIXXXXXXXXXXXXXXXLISCSKPRTSTHRGCRFANGLAVKVGPETGGRELACYVTMRLAEAAVAVTDRSSSRAVAEQRAEVDAYAELASCEATVIGADAVVMSCPRVVDVFVGTKALLQS-CTVEEATILSTSEEPSRVRNGSTVTSSLLQEGVSVXXXXXXXXXXXXXHSHVDNHGKLTHSILGPDSGIGAGECHHCLLGPFVGFHHQSLLIAAVWPHGRGNVAYGANVGSNHTSRQADQEIWPGEGVFFGLSSIIKFPANYSESPFSIVASGVACLPQRVAFPFCLINSPERSFLGVPSALNHLRPGWVLTESMYTIVRNEDKYRRRAKARRNRVDWPIFRPSTVRLMADARARLVAAGGGKEEIYVGDHDAEDVXXXXXXXXXXXXXXXXXNFMTEGSRREGIAAYTLHLRRYALRGLLSRLK 1712
+ KI ++F + R LT EE+ L++ GNWA DWS ++V P ER+R F G V +GS + V++ G P G+Y ST+ + + +LIK + I+C K G F NG + + ETGGRE+ + + + + R S +++ +V Y + ++ +V + + V VG A++++ C V +TILS EE + +++G+ V+ SL+Q G V HSHV+ HGK+T+SI+GP++GIG G FVGFHHQ+LLIAA+WP G+GNV YGANVGSNHT + DQEIWPGEG+FFGL IKFPAN+ +SP++I+A+GV LPQ V FPF LIN P + G+ A+N + PGWVL +++ I RNE+KY++R KA+R + +FRP V LM DAR RL+ DV N++ E R+EGI AYT +++ YAL GL +++
Sbjct: 8 IEKIKKVNEIFKDV----RPLTAEEIEQLKKFGNWAEDWSKIKVGKDFKP-ERVRNSFFFGEVIIGSFEKSVNVDG---LILPSGIYRSTIVNSKIANNSLIKDVKFLANSIVCEEVVIMNVDEINCKK-------GSTFGNGEELPIAIETGGREVKVFSEIPF-DWVEKLAYRKDSSFLSQYEEKVKDYVSNIKGDFSIFFPGVMVKNSRLIDSVIVGEFAIIENACKVSNSTILSNKEERTEIKDGALVSDSLIQWGCEVSSMGIVDHSLLAEHSHVERHGKVTNSIIGPNTGIGEGXXXXXXXXXFVGFHHQALLIAALWPEGKGNVGYGANVGSNHTGKAPDQEIWPGEGLFFGLGVNIKFPANFKKSPYTIIATGVTTLPQCVEFPFSLINIPSSVYEGISPAINEIMPGWVLKNNIFMIKRNEEKYKKRNKAKRTEFVFEVFRPEIVDLMIDARKRLM-----------------DVKEIKQIYTEKEIKGLGKNYLLEERRKEGIEAYTFYIQWYALTGLKRKIE 507 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1022.298.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pages
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1022.298.1 >prot_F-serratus_M_contig1022.298.1 ID=prot_F-serratus_M_contig1022.298.1|Name=mRNA_F-serratus_M_contig1022.298.1|organism=Fucus serratus male|type=polypeptide|length=562bp MEIAIHAVQQRTSRSMDHTTNDRFLRKIDLARKVFGTLGSHGRGLTTEEVback to top mRNA from alignment at F-serratus_M_contig1022:41513..59146+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1022.298.1 ID=mRNA_F-serratus_M_contig1022.298.1|Name=mRNA_F-serratus_M_contig1022.298.1|organism=Fucus serratus male|type=mRNA|length=17634bp|location=Sequence derived from alignment at F-serratus_M_contig1022:41513..59146+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1022:41513..59146+ >mRNA_F-serratus_M_contig1022.298.1 ID=mRNA_F-serratus_M_contig1022.298.1|Name=mRNA_F-serratus_M_contig1022.298.1|organism=Fucus serratus male|type=CDS|length=3372bp|location=Sequence derived from alignment at F-serratus_M_contig1022:41513..59146+ (Fucus serratus male)back to top |