mRNA_F-serratus_M_contig1022.297.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1022.297.1
Unique NamemRNA_F-serratus_M_contig1022.297.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1022.297.1 vs. uniprot
Match: A0A6H5JRP4_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRP4_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.700e-15
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = -2 
Query:  356 RQFGDLEGIAERCSMAGVSYHLRKAKLAWMSEAGSKKTKQTRMADFM 496
            RQFGDLE IAERCSMAGV+YHLRKAK+AWMSEAGSKKTKQT MAD M
Sbjct:  485 RQFGDLEEIAERCSMAGVAYHLRKAKIAWMSEAGSKKTKQTCMADSM 531
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BLAST of mRNA_F-serratus_M_contig1022.297.1 vs. uniprot
Match: A0A6H5JHY0_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY0_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 2.650e-15
Identity = 44/48 (91.67%), Postives = 45/48 (93.75%), Query Frame = -2 
Query:  356 RQFGDLEGI-AERCSMAGVSYHLRKAKLAWMSEAGSKKTKQTRMADFM 496
            RQFGDLE I AERCSMAGV+YHLRKAKLAWMSEAGSKKTKQT MADFM
Sbjct:  412 RQFGDLEEIIAERCSMAGVAYHLRKAKLAWMSEAGSKKTKQTCMADFM 459
[Close]
BLAST of mRNA_F-serratus_M_contig1022.297.1 vs. uniprot
Match: A0A6H5JNH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNH8_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 8.510e-15
Identity = 42/47 (89.36%), Postives = 43/47 (91.49%), Query Frame = -2 
Query:  356 RQFGDLEGIAERCSMAGVSYHLRKAKLAWMSEAGSKKTKQTRMADFM 496
            RQF DLE  AERCSMAGV+YHLRKAKLAWMSEAGSKKTKQT MADFM
Sbjct:  396 RQFVDLEEKAERCSMAGVAYHLRKAKLAWMSEAGSKKTKQTCMADFM 442
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1022.297.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5JRP4_9PHAE1.700e-1589.36HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5JHY0_9PHAE2.650e-1591.67DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JNH8_9PHAE8.510e-1589.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1022contigF-serratus_M_contig1022:36640..37439 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size800
Cds size426
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1022.297.1prot_F-serratus_M_contig1022.297.1Fucus serratus malepolypeptideF-serratus_M_contig1022 36861..37286 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928826.1713846-UTR-F-serratus_M_contig1022:36639..368601622928826.1713846-UTR-F-serratus_M_contig1022:36639..36860Fucus serratus maleUTRF-serratus_M_contig1022 36640..36860 +
1690962590.0987656-UTR-F-serratus_M_contig1022:36639..368601690962590.0987656-UTR-F-serratus_M_contig1022:36639..36860Fucus serratus maleUTRF-serratus_M_contig1022 36640..36860 +
1622928826.2074609-UTR-F-serratus_M_contig1022:37286..374391622928826.2074609-UTR-F-serratus_M_contig1022:37286..37439Fucus serratus maleUTRF-serratus_M_contig1022 37287..37439 +
1690962590.11982-UTR-F-serratus_M_contig1022:37286..374391690962590.11982-UTR-F-serratus_M_contig1022:37286..37439Fucus serratus maleUTRF-serratus_M_contig1022 37287..37439 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928826.1931531-CDS-F-serratus_M_contig1022:36860..372861622928826.1931531-CDS-F-serratus_M_contig1022:36860..37286Fucus serratus maleCDSF-serratus_M_contig1022 36861..37286 +
1690962590.1093433-CDS-F-serratus_M_contig1022:36860..372861690962590.1093433-CDS-F-serratus_M_contig1022:36860..37286Fucus serratus maleCDSF-serratus_M_contig1022 36861..37286 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1022.297.1

>prot_F-serratus_M_contig1022.297.1 ID=prot_F-serratus_M_contig1022.297.1|Name=mRNA_F-serratus_M_contig1022.297.1|organism=Fucus serratus male|type=polypeptide|length=142bp
MRERLKPTMVQLSLPVKVKHLQYILAFNGQTSMTYACRHQLLQRYMKSAM
RVCFVFFDPASLIQANFALRRWYDTPAMLHLSAIPSRSPNCLSGRRRFED
AAPAAGTALDSLRLFELTHPWQTHCISLSPSGSGKPHSPRR*
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mRNA from alignment at F-serratus_M_contig1022:36640..37439+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1022.297.1 ID=mRNA_F-serratus_M_contig1022.297.1|Name=mRNA_F-serratus_M_contig1022.297.1|organism=Fucus serratus male|type=mRNA|length=800bp|location=Sequence derived from alignment at F-serratus_M_contig1022:36640..37439+ (Fucus serratus male)
GTTCTAAGAGTTTTTTATATGTTTTACACAATGTTATTGAGCGTTACAGG
ACCCACACCCAGCGCGATCCCTCCTTATTATTGTGTACGGTACAGCAGTA
GTAGAGAAAATCGATTTCTTCCGTGGTCTCAACGTTATTCCAACATCATC
TCAACACAGCAGCCAACAACACAGTGAGAGAGGTACGTGAGCGTCACACA
CTTAACATCTCGGAAGCTTGTATGCGAGAGCGACTCAAACCAACAATGGT
GCAACTCTCGCTACCCGTGAAAGTCAAGCACCTACAGTATATTTTAGCCT
TCAACGGACAGACATCCATGACATACGCTTGTCGGCATCAGCTTCTGCAA
CGTTACATGAAGTCTGCCATGCGAGTTTGCTTCGTTTTCTTTGATCCAGC
CTCGCTCATCCAGGCCAACTTCGCCTTACGAAGATGGTACGACACCCCGG
CCATGCTGCATCTCTCCGCTATTCCTTCGAGGTCTCCAAACTGCCTTTCC
GGGCGGAGGCGCTTCGAAGACGCAGCCCCAGCAGCAGGAACTGCGCTCGA
TTCCTTGCGGTTGTTCGAGTTGACGCATCCGTGGCAAACACATTGCATCT
CATTGTCCCCAAGCGGGTCCGGCAAACCGCACAGTCCACGAAGGTAGCTT
CCGCAGGTACGGCATTTGTGGATCGTAAACAGTGGAGGGCCCGGCGTGTG
GTCCGGGATCGCCGCGCAGAGCGCTCCCGCTGCGCAAGGCATCTAGGAGC
TGCCTCTCGCTAGCTAGGATGTCCACTGCACTGCTGCCAGTACACTCAGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1022:36640..37439+

>mRNA_F-serratus_M_contig1022.297.1 ID=mRNA_F-serratus_M_contig1022.297.1|Name=mRNA_F-serratus_M_contig1022.297.1|organism=Fucus serratus male|type=CDS|length=852bp|location=Sequence derived from alignment at F-serratus_M_contig1022:36640..37439+ (Fucus serratus male)
ATGCGAGAGCGACTCAAACCAACAATGGTGCAACTCTCGCTACCCGTGAA
AGTCAAGCACCTACAGTATATTTTAGCCTTCAACGGACAGACATCCATGA
CATACGCTTGTCGGCATCAGCTTCTGCAACGTTACATGAAGTCTGCCATG
CGAGTTTGCTTCGTTTTCTTTGATCCAGCCTCGCTCATCCAGGCCAACTT
CGCCTTACGAAGATGGTACGACACCCCGGCCATGCTGCATCTCTCCGCTA
TTCCTTCGAGGTCTCCAAACTGCCTTTCCGGGCGGAGGCGCTTCGAAGAC
GCAGCCCCAGCAGCAGGAACTGCGCTCGATTCCTTGCGGTTGTTCGAGTT
GACGCATCCGTGGCAAACACATTGCATCTCATTGTCCCCAAGCGGGTCCG
GCAAACCGCACAGTCCACGAAGGTAGATGCGAGAGCGACTCAAACCAACA
ATGGTGCAACTCTCGCTACCCGTGAAAGTCAAGCACCTACAGTATATTTT
AGCCTTCAACGGACAGACATCCATGACATACGCTTGTCGGCATCAGCTTC
TGCAACGTTACATGAAGTCTGCCATGCGAGTTTGCTTCGTTTTCTTTGAT
CCAGCCTCGCTCATCCAGGCCAACTTCGCCTTACGAAGATGGTACGACAC
CCCGGCCATGCTGCATCTCTCCGCTATTCCTTCGAGGTCTCCAAACTGCC
TTTCCGGGCGGAGGCGCTTCGAAGACGCAGCCCCAGCAGCAGGAACTGCG
CTCGATTCCTTGCGGTTGTTCGAGTTGACGCATCCGTGGCAAACACATTG
CATCTCATTGTCCCCAAGCGGGTCCGGCAAACCGCACAGTCCACGAAGGT
AG
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