mRNA_F-serratus_M_contig1022.297.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1022.297.1
Unique NamemRNA_F-serratus_M_contig1022.297.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1022.297.1 vs. uniprot
Match: A0A6H5JXN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN5_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 4.360e-35
Identity = 72/171 (42.11%), Postives = 89/171 (52.05%), Query Frame = -2
Query:  356 MPCAAGALCAAIPDHTPGPPLFTIHKCR-TCGSYLRGLCGLPDPLGDNEMQCVCHGCVNSNNRKESSAV-----------------------------------------PAAGAASSKRLRPERQFGDLEGIAERCSMAGVSYHLRKAKLAWMSEAGSKKTKQTRMADFM 742
            MPCAAG+ C A+PDHTPGPP FT H+CR  CG YL G CG+ DP G +EM  +CH C++S  R  S  +                                         P A  A+         FG+LE  AE+C M+ VS+HLRKAKLAWMS  GS++TKQT M DF+
Sbjct:    1 MPCAAGSRCTAVPDHTPGPPAFTNHQCRGVCGQYLHGTCGVVDPQGTSEMHRICHNCLSSRERMTSGEMVEDLCDENLVDMDRSSDDEXXXLVELRQSGXXXXXXXXXXXPYANVAT--------HFGELEDTAEKCRMSEVSFHLRKAKLAWMSAYGSRETKQTCMRDFL 163          
BLAST of mRNA_F-serratus_M_contig1022.297.1 vs. uniprot
Match: A0A6H5JTV4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTV4_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 6.000e-33
Identity = 55/77 (71.43%), Postives = 60/77 (77.92%), Query Frame = -2
Query:  512 MPCAAGALCAAIPDHTPGPPLFTIHKCRTCGSYLRGLCGLPDPLGDNEMQCVCHGCVNSNNRKESSAVPAAGAASSK 742
            MPCAAG+ C A PDHTPGPPL T H CR CG YL GLCG+PDP+GDNEM  VCHGCVNS+N KE+S    A AASSK
Sbjct:    1 MPCAAGSRCLATPDHTPGPPLLTNHPCRVCGGYLHGLCGVPDPVGDNEMHLVCHGCVNSSNCKETSTDSTARAASSK 77          
BLAST of mRNA_F-serratus_M_contig1022.297.1 vs. uniprot
Match: A0A6H5JZK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZK0_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 3.600e-31
Identity = 60/99 (60.61%), Postives = 67/99 (67.68%), Query Frame = -2
Query:  446 MPCAAGALCAAIPDHTPGPPLFTIHKCRTCGSYLRGLCGLPDPLGDNEMQCVCHGCVNSNNRKESSAVPAAGAASSKRLRPERQFGDLEGIAERCSMAG 742
            MPCAAG+ C A PDH P PPLFT H CR CG +L GLCG+ D LGD+EM  VCHGCVNS+NRKESS    AGAASSK   P+   G   G  +R S  G
Sbjct:    1 MPCAAGSRCLATPDHAPAPPLFTNHPCRVCGGHLHGLCGVHDLLGDDEMHRVCHGCVNSSNRKESSTDSTAGAASSKHPCPD---GRATGKEKRASALG 96          
BLAST of mRNA_F-serratus_M_contig1022.297.1 vs. uniprot
Match: A0A6H5K2E1_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2E1_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 9.330e-31
Identity = 61/89 (68.54%), Postives = 67/89 (75.28%), Query Frame = -2
Query:  476 MPCAAGALCAAIPDHTPGPPLFTIHKCRTCGSYLRGLCGLPDPLGDNEMQCVCHGCVNSNNRKESSAVPAAGAASSKRLRPERQFGDLE 742
            MPCAAG+ C A PDHTPGPPLFT H CR CG YL GLCG+ D LGDNEM  VCHGCVNS+NRKESS    AGAASSKR  P+ +  + E
Sbjct:    1 MPCAAGSRCLATPDHTPGPPLFTNHPCRVCGGYLYGLCGVHDLLGDNEMHRVCHGCVNSSNRKESSTDSTAGAASSKRPCPDGRATEKE 89          
BLAST of mRNA_F-serratus_M_contig1022.297.1 vs. uniprot
Match: A0A6H5L326_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L326_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 4.080e-30
Identity = 71/162 (43.83%), Postives = 87/162 (53.70%), Query Frame = -2
Query:  350 MPCAAGALCAAIPDHTPGPPLFTIHKCR-TCGSYLRGLCGLPDPLGDNEMQCVCHGCVNSNNRKESSAVPA------AGAASSKRLRPERQ------------------------FGDLEGIAERCSMAGVSYHLRKAKLAWMSEAGSKKTKQTRMADFM*R 742
            MPCAAG  C  +PD TPGPP FTIHKCR  C  YL G+CG+ DPLG  E+  +CH C  S  R+ S A  A      +G++ +K +    Q                        F +LE IAE+C M   SYHLRKAKLAWMS  G+  TKQT + D+  R
Sbjct:    1 MPCAAGDRCT-MPDETPGPPHFTIHKCRGVCRQYLHGICGVVDPLGTTEVHRICHTCAASRERETSGAGTAGSQPEKSGSSGAKDVDLVEQGEAGQQSLAAAXXXXXPHANVAQHFCELEDIAEKCYMPKASYHLRKAKLAWMSAHGAGATKQTCIQDYFKR 161          
BLAST of mRNA_F-serratus_M_contig1022.297.1 vs. uniprot
Match: A0A6H5K2U1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2U1_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 1.820e-20
Identity = 52/71 (73.24%), Postives = 58/71 (81.69%), Query Frame = -2
Query:  287 QFGDLEGIAERCSMAGVSYHLRKAKLAWMSEAGSKKTKQTRMADFM*RCRS*CRQAYVMDVC--PLKAKIY 493
            QFGDLE IA+RCSMAG++YHLRKAKLAWMSEAGSKKTKQT MADFM  CRS C QA  MDV    +K ++Y
Sbjct:  225 QFGDLEEIAKRCSMAGIAYHLRKAKLAWMSEAGSKKTKQTCMADFMSSCRS-CPQAMFMDVFFPYIKVRVY 294          
BLAST of mRNA_F-serratus_M_contig1022.297.1 vs. uniprot
Match: A0A6H5KKH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKH9_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 2.020e-19
Identity = 47/89 (52.81%), Postives = 54/89 (60.67%), Query Frame = -2
Query:  479 MPCAAGALCAAIPDHTPGPPLFTIHKCR-TCGSYLRGLCGLPDPLGDNEMQCVCHGCVNSNNRKESSAVPAAGAASSKRLRPERQFGDL 742
            MPCAAG  C  +PD TPGPP FTIHKC   CG YLRG+CG+ DPLG  E+  +CH C  S  R E+S    AGA   K    E +  DL
Sbjct:    1 MPCAAGDPCT-VPDDTPGPPHFTIHKCSGVCGQYLRGICGVVDPLGTTEVHRICHTCAASRER-ETSGAGTAGAQPEKSGSSEAKDVDL 87          
BLAST of mRNA_F-serratus_M_contig1022.297.1 vs. uniprot
Match: A0A6H5JB59_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB59_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 1.240e-17
Identity = 44/47 (93.62%), Postives = 46/47 (97.87%), Query Frame = -2
Query:  356 RQFGDLEGIAERCSMAGVSYHLRKAKLAWMSEAGSKKTKQTRMADFM 496
            R+FGDLE IAERCSMAGV+YHLRKAKLAWMSEAGSKKTKQTRMADFM
Sbjct:  341 RKFGDLEEIAERCSMAGVAYHLRKAKLAWMSEAGSKKTKQTRMADFM 387          
BLAST of mRNA_F-serratus_M_contig1022.297.1 vs. uniprot
Match: A0A6H5J7Q2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7Q2_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 3.110e-17
Identity = 49/71 (69.01%), Postives = 52/71 (73.24%), Query Frame = -3
Query:  493 RTTRRALHCLRSTNAVPAEATFVDCAVCRTRLGTMRCNVFATDASTRTTARNRAQFLLLGLRLRSASARKG 705
            RTT     CLR+TNAV AEATF+D AVC TRL T RC V ATD STR TARN+AQ  LLGL LRSA AR G
Sbjct:   13 RTTHPPPRCLRTTNAVSAEATFMDSAVCMTRLATTRCTVIATDVSTRATARNQAQTRLLGLHLRSAPARAG 83          
BLAST of mRNA_F-serratus_M_contig1022.297.1 vs. uniprot
Match: A0A6H5JYN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYN7_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 1.380e-16
Identity = 49/86 (56.98%), Postives = 54/86 (62.79%), Query Frame = -2
Query:  410 CRTCGSYLRGLCGLPDPLGDNEMQCVCHGCVNSNNRKESSAVPAAGAASSKRLRP-ERQFGDLEGIAERCSMAGVSYHLRKAKLAW 664
            CR CGSYL GLCG+ DPLGDNEM  VCH CVNS+NRKESS    A AASSKR  P ER  G  +      S+  V    RK K +W
Sbjct:    3 CRVCGSYLHGLCGVHDPLGDNEMHRVCHRCVNSSNRKESSTDSTAWAASSKRPCPDERATGKEKRAGALGSLKPVGNTARK-KSSW 87          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1022.297.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5JXN5_9PHAE4.360e-3542.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTV4_9PHAE6.000e-3371.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZK0_9PHAE3.600e-3160.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2E1_9PHAE9.330e-3168.54HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5L326_9PHAE4.080e-3043.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2U1_9PHAE1.820e-2073.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKH9_9PHAE2.020e-1952.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JB59_9PHAE1.240e-1793.62DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5J7Q2_9PHAE3.110e-1769.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYN7_9PHAE1.380e-1656.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1022contigF-serratus_M_contig1022:36640..37439 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size800
Cds size426
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1022.297.1prot_F-serratus_M_contig1022.297.1Fucus serratus malepolypeptideF-serratus_M_contig1022 36861..37286 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928826.1713846-UTR-F-serratus_M_contig1022:36639..368601622928826.1713846-UTR-F-serratus_M_contig1022:36639..36860Fucus serratus maleUTRF-serratus_M_contig1022 36640..36860 +
1690962590.0987656-UTR-F-serratus_M_contig1022:36639..368601690962590.0987656-UTR-F-serratus_M_contig1022:36639..36860Fucus serratus maleUTRF-serratus_M_contig1022 36640..36860 +
1622928826.2074609-UTR-F-serratus_M_contig1022:37286..374391622928826.2074609-UTR-F-serratus_M_contig1022:37286..37439Fucus serratus maleUTRF-serratus_M_contig1022 37287..37439 +
1690962590.11982-UTR-F-serratus_M_contig1022:37286..374391690962590.11982-UTR-F-serratus_M_contig1022:37286..37439Fucus serratus maleUTRF-serratus_M_contig1022 37287..37439 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928826.1931531-CDS-F-serratus_M_contig1022:36860..372861622928826.1931531-CDS-F-serratus_M_contig1022:36860..37286Fucus serratus maleCDSF-serratus_M_contig1022 36861..37286 +
1690962590.1093433-CDS-F-serratus_M_contig1022:36860..372861690962590.1093433-CDS-F-serratus_M_contig1022:36860..37286Fucus serratus maleCDSF-serratus_M_contig1022 36861..37286 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1022.297.1

>prot_F-serratus_M_contig1022.297.1 ID=prot_F-serratus_M_contig1022.297.1|Name=mRNA_F-serratus_M_contig1022.297.1|organism=Fucus serratus male|type=polypeptide|length=142bp
MRERLKPTMVQLSLPVKVKHLQYILAFNGQTSMTYACRHQLLQRYMKSAM
RVCFVFFDPASLIQANFALRRWYDTPAMLHLSAIPSRSPNCLSGRRRFED
AAPAAGTALDSLRLFELTHPWQTHCISLSPSGSGKPHSPRR*
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mRNA from alignment at F-serratus_M_contig1022:36640..37439+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1022.297.1 ID=mRNA_F-serratus_M_contig1022.297.1|Name=mRNA_F-serratus_M_contig1022.297.1|organism=Fucus serratus male|type=mRNA|length=800bp|location=Sequence derived from alignment at F-serratus_M_contig1022:36640..37439+ (Fucus serratus male)
GTTCTAAGAGTTTTTTATATGTTTTACACAATGTTATTGAGCGTTACAGG ACCCACACCCAGCGCGATCCCTCCTTATTATTGTGTACGGTACAGCAGTA GTAGAGAAAATCGATTTCTTCCGTGGTCTCAACGTTATTCCAACATCATC TCAACACAGCAGCCAACAACACAGTGAGAGAGGTACGTGAGCGTCACACA CTTAACATCTCGGAAGCTTGTATGCGAGAGCGACTCAAACCAACAATGGT GCAACTCTCGCTACCCGTGAAAGTCAAGCACCTACAGTATATTTTAGCCT TCAACGGACAGACATCCATGACATACGCTTGTCGGCATCAGCTTCTGCAA CGTTACATGAAGTCTGCCATGCGAGTTTGCTTCGTTTTCTTTGATCCAGC CTCGCTCATCCAGGCCAACTTCGCCTTACGAAGATGGTACGACACCCCGG CCATGCTGCATCTCTCCGCTATTCCTTCGAGGTCTCCAAACTGCCTTTCC GGGCGGAGGCGCTTCGAAGACGCAGCCCCAGCAGCAGGAACTGCGCTCGA TTCCTTGCGGTTGTTCGAGTTGACGCATCCGTGGCAAACACATTGCATCT CATTGTCCCCAAGCGGGTCCGGCAAACCGCACAGTCCACGAAGGTAGCTT CCGCAGGTACGGCATTTGTGGATCGTAAACAGTGGAGGGCCCGGCGTGTG GTCCGGGATCGCCGCGCAGAGCGCTCCCGCTGCGCAAGGCATCTAGGAGC TGCCTCTCGCTAGCTAGGATGTCCACTGCACTGCTGCCAGTACACTCAGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1022:36640..37439+

>mRNA_F-serratus_M_contig1022.297.1 ID=mRNA_F-serratus_M_contig1022.297.1|Name=mRNA_F-serratus_M_contig1022.297.1|organism=Fucus serratus male|type=CDS|length=852bp|location=Sequence derived from alignment at F-serratus_M_contig1022:36640..37439+ (Fucus serratus male)
ATGCGAGAGCGACTCAAACCAACAATGGTGCAACTCTCGCTACCCGTGAA
AGTCAAGCACCTACAGTATATTTTAGCCTTCAACGGACAGACATCCATGA
CATACGCTTGTCGGCATCAGCTTCTGCAACGTTACATGAAGTCTGCCATG
CGAGTTTGCTTCGTTTTCTTTGATCCAGCCTCGCTCATCCAGGCCAACTT
CGCCTTACGAAGATGGTACGACACCCCGGCCATGCTGCATCTCTCCGCTA
TTCCTTCGAGGTCTCCAAACTGCCTTTCCGGGCGGAGGCGCTTCGAAGAC
GCAGCCCCAGCAGCAGGAACTGCGCTCGATTCCTTGCGGTTGTTCGAGTT
GACGCATCCGTGGCAAACACATTGCATCTCATTGTCCCCAAGCGGGTCCG
GCAAACCGCACAGTCCACGAAGGTAGATGCGAGAGCGACTCAAACCAACA
ATGGTGCAACTCTCGCTACCCGTGAAAGTCAAGCACCTACAGTATATTTT
AGCCTTCAACGGACAGACATCCATGACATACGCTTGTCGGCATCAGCTTC
TGCAACGTTACATGAAGTCTGCCATGCGAGTTTGCTTCGTTTTCTTTGAT
CCAGCCTCGCTCATCCAGGCCAACTTCGCCTTACGAAGATGGTACGACAC
CCCGGCCATGCTGCATCTCTCCGCTATTCCTTCGAGGTCTCCAAACTGCC
TTTCCGGGCGGAGGCGCTTCGAAGACGCAGCCCCAGCAGCAGGAACTGCG
CTCGATTCCTTGCGGTTGTTCGAGTTGACGCATCCGTGGCAAACACATTG
CATCTCATTGTCCCCAAGCGGGTCCGGCAAACCGCACAGTCCACGAAGGT
AG
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