mRNA_F-serratus_M_contig1021.295.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1021.295.1
Unique NamemRNA_F-serratus_M_contig1021.295.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1021.295.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1021contigF-serratus_M_contig1021:283844..286984 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1110
Cds size1110
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1021.295.1prot_F-serratus_M_contig1021.295.1Fucus serratus malepolypeptideF-serratus_M_contig1021 283844..286984 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928825.6319425-CDS-F-serratus_M_contig1021:283843..2843201622928825.6319425-CDS-F-serratus_M_contig1021:283843..284320Fucus serratus maleCDSF-serratus_M_contig1021 283844..284320 -
1690962589.827408-CDS-F-serratus_M_contig1021:283843..2843201690962589.827408-CDS-F-serratus_M_contig1021:283843..284320Fucus serratus maleCDSF-serratus_M_contig1021 283844..284320 -
1622928825.644793-CDS-F-serratus_M_contig1021:285029..2851941622928825.644793-CDS-F-serratus_M_contig1021:285029..285194Fucus serratus maleCDSF-serratus_M_contig1021 285030..285194 -
1690962589.8388824-CDS-F-serratus_M_contig1021:285029..2851941690962589.8388824-CDS-F-serratus_M_contig1021:285029..285194Fucus serratus maleCDSF-serratus_M_contig1021 285030..285194 -
1622928825.6579857-CDS-F-serratus_M_contig1021:286516..2869841622928825.6579857-CDS-F-serratus_M_contig1021:286516..286984Fucus serratus maleCDSF-serratus_M_contig1021 286517..286984 -
1690962589.8503294-CDS-F-serratus_M_contig1021:286516..2869841690962589.8503294-CDS-F-serratus_M_contig1021:286516..286984Fucus serratus maleCDSF-serratus_M_contig1021 286517..286984 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1021.295.1

>prot_F-serratus_M_contig1021.295.1 ID=prot_F-serratus_M_contig1021.295.1|Name=mRNA_F-serratus_M_contig1021.295.1|organism=Fucus serratus male|type=polypeptide|length=370bp
SESPHAKPSSATIPRASSAFGEALSCAFGRMEGVRKRIYELCLGAVVEKA
ESLLLDGCSGLATVETSSPEAPSTQHEAGTSTRGGQGRVEDLGRAEGEGP
AVHRRGGSFFGHVGECGRAEGGSQSQTLGLKVGDEWVVTEFRRVRESIQV
FRVSCRVPRVIPPEGSACRTGSDVRCWGSRRTNAGAWETCLSVLGLGREG
NNRLMEAILAWSQLSGERATELDGGDAGPFSNGPTSPALIGIALVAALIL
SIESSKEQRPSSFDVCPLGRGSNGNGSWFTHRDSKCDGLRCSRLDGGGGR
ACLQTEDVVLAFVVTTTRCINHTIRPSDMSNPTLSSIHIAEGDCGAGAPR
TGGWDCYGEGSCVCGAEVDA
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mRNA from alignment at F-serratus_M_contig1021:283844..286984-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1021.295.1 ID=mRNA_F-serratus_M_contig1021.295.1|Name=mRNA_F-serratus_M_contig1021.295.1|organism=Fucus serratus male|type=mRNA|length=3141bp|location=Sequence derived from alignment at F-serratus_M_contig1021:283844..286984- (Fucus serratus male)
TCGGAAAGCCCCCACGCCAAGCCTTCGTCAGCAACAATCCCGCGAGCTTC
ATCGGCTTTCGGCGAAGCTCTCTCTTGCGCGTTCGGTCGGATGGAGGGCG
TACGGAAGAGAATATACGAACTCTGTCTCGGGGCGGTCGTTGAGAAGGCT
GAATCCCTACTTCTCGATGGATGCTCCGGCCTTGCCACGGTGGAGACATC
CTCTCCAGAAGCGCCCAGCACGCAACATGAAGCTGGGACTTCCACGAGGG
GAGGTCAAGGTCGTGTGGAAGACTTGGGCCGTGCAGAGGGGGAGGGCCCA
GCTGTCCACAGGCGAGGGGGCTCGTTCTTCGGACACGTCGGAGAGTGCGG
GCGAGCTGAGGGGGGGAGCCAGAGCCAGACCCTTGGCTTGAAAGTGGGCG
ACGAGTGGGTGGTGACGGAGTTTCGGCGGGTCAGAGAGAGCATCCAAGTG
TTCCGAGTTTCCTGTCGGGTGAGAGATGAGATAGGGGAGCGGTATAATCG
GGTTTCGAGCCACGCTGCTGCTGGTTTCGTTCGGTGTGGAGAGGCGGTAC
CCTCTGCCATTTTTCATGATGCTTAATTGACTGGCCCTTACTGACTGCGT
CACTCTAGCTCCGAAGCCTTCGTAGTGATCCTCATCAGCTTTTCCATCGA
TCCATTATTGTCGACAGATTTATCAATGGAGTTGTTACCCACTTGGTATC
ATTTGTTTATGTTTGTGCTGCATCAGCCACTACATCCTTTCTACGATGCG
TGCTTGCATCATGACTCCAGCGCCTCGGTGAAGGACTACACTTCCCCCAA
TATCCATCTATCGGGTTCCTTACTGATTCATCGATATCTACCTTCCCATT
TGTACAGTACATGGAATTCTCGTTCGTCGTATACCTTGTATCTGGGTGTA
TCTATTTGATATCTATTCTTGAACGGCAAGTGGATACTACGCCCCCCGGG
GATCGATATTTTCGCCAGCTCCGTGCTCACACATTGTGGCAGTGTAGGAC
GTATAGCAAAAATTGCTTGAGAAGATACGCAGAAAGTGGTAAGAGAAGGC
GGCCGTTGCAAGGATCAGAAATGTCGGGTCATAAACACGCAGTCTCGGCT
GTCATTGGAAACATTAACCGTCTCAGGTTTGCAAACAGGAGCCGTATCGT
ATCCACGTTCAAAAAGCCGACGACCCGGCTGCTCCTTAATACTCAACTTG
TTTGTACGTCGAGGTATTTTCTTTAGACAAGTGAAATAACTAAGCTTCGC
CGCGGTTGATGTCCAACATACGGTACGGCAAACCGTGGATCCGTGCAAGG
CTAGCATGAGCATCATACTTTTTTGTTATGTTTTGTTTTGATCACATAGA
GTAGGCATCATCACAAAAGCTATTATTACAAGCTAATAATAGCAGGGGTG
AGAATGGCGGGAACGCAGGAATTGGCGCGTGATCCTGGAAAAAACGCTCT
TGGTTCATATTCCATCGGCACAACAGCGACAAGGTTCTATGCTGTGGACT
ATGACAAAATAAAGAGTTTGTGGACCATAAATAGTTACCGATGTATTCGT
CTGTTTATAGCTATAAGCAACGCGTTTGATCCTCCTGAGCGAGCGCTAGC
ACCCCGTAAATAGCCACGACAAACTGTCCCCCACTCAAAACCACCCCATC
CTTTTCTGCACCATTTTTGTATCTTTCTTGGACACCTTACTCTCAACGAG
GGACAAAAAGTTCAATCGCGACCGGCCAAACGTCGGTCGGATTCCACTGC
CCGCTTAAGCGCGATTCATGTGCTGTTTCGCCGGCTACAGGTGCCTCGGG
TGATTCCACCGGAAGGTTCGGCATGCAGGACGGGGAGTGACGTCAGGTGC
TGGGGTAGCCGTCGAACGAACGCGGGCGCTTGGGAAACATGCCTTTCTGT
GCTGGGGCTTGGCAGGGAGGGTAATAATCGCCTCATGGAGGCTATTCTTG
CGTGGGTACGTGGGTGGAACAGGTTGTAGAGAAGGGGTGCGCTGTCGGTA
GTGTTATTCAATGCTCTCGACCTGGGTTTGTTTGAGGTTCGTCATCTTCT
TTGGGGGATTGTTCGCATTCCGAGGACAACACCCTCTGTAGTGCCCACTG
CACGCATTTTATTTCTTCAAGACGATCCGAAAACCCTATTGTGGCTCTCT
GTTACCCGTACCCCACCTGAATGCGCAAGAAAATGTGTTACTGCAACTCG
TTAGAACTCACTGTGCGGGGCACCTCGTCGTACGTGTAGCGATAGCACTG
TTTTCCTGAAGCGAGCTTAGAGCAGCATAAATTAGCATTGCCTGTTAGAT
TTGATTGGTCTGGATATCTTAAAGTGGGACGGGGTTGCCAGATGCCATAT
CCACATAAACGATGGCGTGAGGCACTACAGTCTCTGGTACGAGTGATGTT
GGGGGTAGGTAAAGCTTGCAAGGGTGGTTCCGTTGGCCTCCACAGCAAAT
AGAAGGGTCATAGCTACGAATAACAATCAAATGAGTCGTGTGAGCACAAT
CCAAGATGTGATTACCCGCATTGAGTCGCCTGAACAGTAATCTCCGCGAA
GAGTTTTTTTTACCTGTCTAGTATCGCTTACTTCATACTCGCCATGCGCT
GAGTCGCGCTCCGGCTCACATCCTTTACTATTTGCCATTTCTCTGTGGGT
GTCATCTTTTAAAGTCGCAGTTGTCGGGAGAACGCGCGACAGAGCTCGAT
GGTGGCGACGCGGGACCCTTCTCGAACGGACCAACTTCTCCAGCTCTGAT
TGGAATAGCTCTAGTGGCCGCGTTGATACTCAGTATCGAGTCGTCAAAAG
AGCAGCGACCCTCTTCCTTCGACGTCTGCCCGTTGGGGCGCGGCTCGAAT
GGCAACGGTTCGTGGTTCACGCACCGGGATTCGAAGTGTGACGGATTGCG
GTGCAGCAGGTTGGACGGTGGAGGCGGGAGGGCATGTCTTCAGACGGAGG
ATGTTGTTCTTGCGTTTGTTGTGACAACCACGCGCTGCATAAACCACACC
ATACGCCCTTCAGACATGTCAAACCCGACGCTAAGCAGTATTCATATCGC
GGAAGGCGACTGCGGAGCCGGGGCGCCGAGGACAGGAGGGTGGGACTGCT
ATGGCGAGGGATCTTGTGTATGCGGTGCTGAGGTTGACGCT
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Coding sequence (CDS) from alignment at F-serratus_M_contig1021:283844..286984-

>mRNA_F-serratus_M_contig1021.295.1 ID=mRNA_F-serratus_M_contig1021.295.1|Name=mRNA_F-serratus_M_contig1021.295.1|organism=Fucus serratus male|type=CDS|length=2220bp|location=Sequence derived from alignment at F-serratus_M_contig1021:283844..286984- (Fucus serratus male)
TCGGAAAGCCCCCACGCCAAGCCTTCGTCAGCAACAATCCCGCGAGCTTC
ATCGGCTTTCGGCGAAGCTCTCTCTTGCGCGTTCGGTCGGATGGAGGGCG
TACGGAAGAGAATATACGAACTCTGTCTCGGGGCGGTCGTTGAGAAGGCT
GAATCCCTACTTCTCGATGGATGCTCCGGCCTTGCCACGGTGGAGACATC
CTCTCCAGAAGCGCCCAGCACGCAACATGAAGCTGGGACTTCCACGAGGG
GAGGTCAAGGTCGTGTGGAAGACTTGGGCCGTGCAGAGGGGGAGGGCCCA
GCTGTCCACAGGCGAGGGGGCTCGTTCTTCGGACACGTCGGAGAGTGCGG
GCGAGCTGAGGGGGGGAGCCAGAGCCAGACCCTTGGCTTGAAAGTGGGCG
ACGAGTGGGTGGTGACGGAGTTTCGGCGGGTCAGAGAGAGCATCCAAGTG
TTCCGAGTTTCCTGTCGGTCGGAAAGCCCCCACGCCAAGCCTTCGTCAGC
AACAATCCCGCGAGCTTCATCGGCTTTCGGCGAAGCTCTCTCTTGCGCGT
TCGGTCGGATGGAGGGCGTACGGAAGAGAATATACGAACTCTGTCTCGGG
GCGGTCGTTGAGAAGGCTGAATCCCTACTTCTCGATGGATGCTCCGGCCT
TGCCACGGTGGAGACATCCTCTCCAGAAGCGCCCAGCACGCAACATGAAG
CTGGGACTTCCACGAGGGGAGGTCAAGGTCGTGTGGAAGACTTGGGCCGT
GCAGAGGGGGAGGGCCCAGCTGTCCACAGGCGAGGGGGCTCGTTCTTCGG
ACACGTCGGAGAGTGCGGGCGAGCTGAGGGGGGGAGCCAGAGCCAGACCC
TTGGCTTGAAAGTGGGCGACGAGTGGGTGGTGACGGAGTTTCGGCGGGTC
AGAGAGAGCATCCAAGTGTTCCGAGTTTCCTGTCGGGTGCCTCGGGTGAT
TCCACCGGAAGGTTCGGCATGCAGGACGGGGAGTGACGTCAGGTGCTGGG
GTAGCCGTCGAACGAACGCGGGCGCTTGGGAAACATGCCTTTCTGTGCTG
GGGCTTGGCAGGGAGGGTAATAATCGCCTCATGGAGGCTATTCTTGCGTG
GGTGCCTCGGGTGATTCCACCGGAAGGTTCGGCATGCAGGACGGGGAGTG
ACGTCAGGTGCTGGGGTAGCCGTCGAACGAACGCGGGCGCTTGGGAAACA
TGCCTTTCTGTGCTGGGGCTTGGCAGGGAGGGTAATAATCGCCTCATGGA
GGCTATTCTTGCGTGGTCGCAGTTGTCGGGAGAACGCGCGACAGAGCTCG
ATGGTGGCGACGCGGGACCCTTCTCGAACGGACCAACTTCTCCAGCTCTG
ATTGGAATAGCTCTAGTGGCCGCGTTGATACTCAGTATCGAGTCGTCAAA
AGAGCAGCGACCCTCTTCCTTCGACGTCTGCCCGTTGGGGCGCGGCTCGA
ATGGCAACGGTTCGTGGTTCACGCACCGGGATTCGAAGTGTGACGGATTG
CGGTGCAGCAGGTTGGACGGTGGAGGCGGGAGGGCATGTCTTCAGACGGA
GGATGTTGTTCTTGCGTTTGTTGTGACAACCACGCGCTGCATAAACCACA
CCATACGCCCTTCAGACATGTCAAACCCGACGCTAAGCAGTATTCATATC
GCGGAAGGCGACTGCGGAGCCGGGGCGCCGAGGACAGGAGGGTGGGACTG
CTATGGCGAGGGATCTTGTGTATGCGGTGCTGAGGTTGACGCTTCGCAGT
TGTCGGGAGAACGCGCGACAGAGCTCGATGGTGGCGACGCGGGACCCTTC
TCGAACGGACCAACTTCTCCAGCTCTGATTGGAATAGCTCTAGTGGCCGC
GTTGATACTCAGTATCGAGTCGTCAAAAGAGCAGCGACCCTCTTCCTTCG
ACGTCTGCCCGTTGGGGCGCGGCTCGAATGGCAACGGTTCGTGGTTCACG
CACCGGGATTCGAAGTGTGACGGATTGCGGTGCAGCAGGTTGGACGGTGG
AGGCGGGAGGGCATGTCTTCAGACGGAGGATGTTGTTCTTGCGTTTGTTG
TGACAACCACGCGCTGCATAAACCACACCATACGCCCTTCAGACATGTCA
AACCCGACGCTAAGCAGTATTCATATCGCGGAAGGCGACTGCGGAGCCGG
GGCGCCGAGGACAGGAGGGTGGGACTGCTATGGCGAGGGATCTTGTGTAT
GCGGTGCTGAGGTTGACGCT
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