mRNA_F-serratus_M_contig1021.293.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1021.293.1
Unique NamemRNA_F-serratus_M_contig1021.293.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1021.293.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1021contigF-serratus_M_contig1021:245558..246003 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size446
Cds size366
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928825.0804524-CDS-F-serratus_M_contig1021:245557..2459231622928825.0804524-CDS-F-serratus_M_contig1021:245557..245923Fucus serratus maleCDSF-serratus_M_contig1021 245558..245923 +
1690962589.5736873-CDS-F-serratus_M_contig1021:245557..2459231690962589.5736873-CDS-F-serratus_M_contig1021:245557..245923Fucus serratus maleCDSF-serratus_M_contig1021 245558..245923 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928825.0991032-UTR-F-serratus_M_contig1021:245923..2460031622928825.0991032-UTR-F-serratus_M_contig1021:245923..246003Fucus serratus maleUTRF-serratus_M_contig1021 245924..246003 +
1690962589.5905778-UTR-F-serratus_M_contig1021:245923..2460031690962589.5905778-UTR-F-serratus_M_contig1021:245923..246003Fucus serratus maleUTRF-serratus_M_contig1021 245924..246003 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1021.293.1prot_F-serratus_M_contig1021.293.1Fucus serratus malepolypeptideF-serratus_M_contig1021 245558..245923 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1021.293.1

>prot_F-serratus_M_contig1021.293.1 ID=prot_F-serratus_M_contig1021.293.1|Name=mRNA_F-serratus_M_contig1021.293.1|organism=Fucus serratus male|type=polypeptide|length=122bp
MGYRRHSERQRRRRRGRRPGAAPGVQQEVAFNRIGAGDCGRSFRPSWRHH
FALRRNSGNNCRVDGIPTGANNRVVTTCGRGIADGSSTTTKGSRRAVSNI
GRSCTYPDYIRSLSGAGITRR*
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mRNA from alignment at F-serratus_M_contig1021:245558..246003+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1021.293.1 ID=mRNA_F-serratus_M_contig1021.293.1|Name=mRNA_F-serratus_M_contig1021.293.1|organism=Fucus serratus male|type=mRNA|length=446bp|location=Sequence derived from alignment at F-serratus_M_contig1021:245558..246003+ (Fucus serratus male)
ATGGGGTACCGGAGACACAGCGAAAGACAACGGCGACGACGGCGGGGACG
ACGACCAGGGGCCGCTCCTGGTGTACAGCAAGAAGTCGCCTTCAACCGCA
TCGGCGCCGGTGATTGTGGTAGGAGCTTCCGTCCAAGCTGGCGTCACCAC
TTCGCACTTCGCCGAAACAGTGGTAACAACTGCCGCGTCGATGGGATTCC
CACCGGTGCAAATAACAGGGTAGTCACCACATGCGGGAGAGGCATTGCTG
ATGGTTCTTCCACCACTACCAAGGGCTCCAGGCGCGCCGTTAGCAACATC
GGCAGGTCTTGCACCTATCCCGATTATATCCGTAGCTTGAGCGGCGCTGG
CATCACCCGGAGATAAACTAGTTCGCCTAAAAGGGATACCCCTGGAGGCC
GAGCACCGGCGGGCGCCGTCATCCATGGCTTCTAGCTGAGGCGACA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1021:245558..246003+

>mRNA_F-serratus_M_contig1021.293.1 ID=mRNA_F-serratus_M_contig1021.293.1|Name=mRNA_F-serratus_M_contig1021.293.1|organism=Fucus serratus male|type=CDS|length=732bp|location=Sequence derived from alignment at F-serratus_M_contig1021:245558..246003+ (Fucus serratus male)
ATGGGGTACCGGAGACACAGCGAAAGACAACGGCGACGACGGCGGGGACG
ACGACCAGGGGCCGCTCCTGGTGTACAGCAAGAAGTCGCCTTCAACCGCA
TCGGCGCCGGTGATTGTGGTAGGAGCTTCCGTCCAAGCTGGCGTCACCAC
TTCGCACTTCGCCGAAACAGTGGTAACAACTGCCGCGTCGATGGGATTCC
CACCGGTGCAAATAACAGGGTAGTCACCACATGCGGGAGAGGCATTGCTG
ATGGTTCTTCCACCACTACCAAGGGCTCCAGGCGCGCCGTTAGCAACATC
GGCAGGTCTTGCACCTATCCCGATTATATCCGTAGCTTGAGCGGCGCTGG
CATCACCCGGAGATAAATGGGGTACCGGAGACACAGCGAAAGACAACGGC
GACGACGGCGGGGACGACGACCAGGGGCCGCTCCTGGTGTACAGCAAGAA
GTCGCCTTCAACCGCATCGGCGCCGGTGATTGTGGTAGGAGCTTCCGTCC
AAGCTGGCGTCACCACTTCGCACTTCGCCGAAACAGTGGTAACAACTGCC
GCGTCGATGGGATTCCCACCGGTGCAAATAACAGGGTAGTCACCACATGC
GGGAGAGGCATTGCTGATGGTTCTTCCACCACTACCAAGGGCTCCAGGCG
CGCCGTTAGCAACATCGGCAGGTCTTGCACCTATCCCGATTATATCCGTA
GCTTGAGCGGCGCTGGCATCACCCGGAGATAA
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