mRNA_F-serratus_M_contig1021.292.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1021.292.1
Unique NamemRNA_F-serratus_M_contig1021.292.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1021.292.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1021contigF-serratus_M_contig1021:243866..245374 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size764
Cds size762
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928824.9114432-CDS-F-serratus_M_contig1021:243865..2441441622928824.9114432-CDS-F-serratus_M_contig1021:243865..244144Fucus serratus maleCDSF-serratus_M_contig1021 243866..244144 -
1690962589.5336225-CDS-F-serratus_M_contig1021:243865..2441441690962589.5336225-CDS-F-serratus_M_contig1021:243865..244144Fucus serratus maleCDSF-serratus_M_contig1021 243866..244144 -
1622928824.9327245-CDS-F-serratus_M_contig1021:244891..2453741622928824.9327245-CDS-F-serratus_M_contig1021:244891..245374Fucus serratus maleCDSF-serratus_M_contig1021 244892..245374 -
1690962589.542569-CDS-F-serratus_M_contig1021:244891..2453741690962589.542569-CDS-F-serratus_M_contig1021:244891..245374Fucus serratus maleCDSF-serratus_M_contig1021 244892..245374 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1021.292.1prot_F-serratus_M_contig1021.292.1Fucus serratus malepolypeptideF-serratus_M_contig1021 243866..245374 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1021.292.1

>prot_F-serratus_M_contig1021.292.1 ID=prot_F-serratus_M_contig1021.292.1|Name=mRNA_F-serratus_M_contig1021.292.1|organism=Fucus serratus male|type=polypeptide|length=254bp
EIRNTSAFTDPESPLTPPQDNDVGGKSVGVIIKKISSRRRELEERTVSGP
LEDGRVKDAAESDTTRKRSSLRTPDRFRNEKKSVAFGKQVSDPVPDRIGM
TESVVGFENGSPCVTVRVEDAEASLTSPVTAAHGIVDSGKSDNSLGAVLE
DALQLKSMGIRAFRSSRNESVDADYQCLKAGYSTECSSSSTSLMQNYARC
IRVASGGGEASLTLPTPVAAVTSVGGGGRSLLPDRVECMAGATLLTVDEP
PSPA
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mRNA from alignment at F-serratus_M_contig1021:243866..245374-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1021.292.1 ID=mRNA_F-serratus_M_contig1021.292.1|Name=mRNA_F-serratus_M_contig1021.292.1|organism=Fucus serratus male|type=mRNA|length=1509bp|location=Sequence derived from alignment at F-serratus_M_contig1021:243866..245374- (Fucus serratus male)
GAAATTAGAAATACTTCAGCTTTTACGGATCCGGAATCGCCCTTGACACC
ACCACAAGACAACGACGTGGGCGGCAAGAGCGTGGGGGTGATTATTAAGA
AAATCTCGAGCAGAAGAAGAGAGCTTGAAGAACGAACGGTTTCAGGACCT
CTAGAAGATGGAAGGGTCAAAGACGCGGCGGAATCGGATACCACGCGTAA
GAGATCGTCATTGCGGACCCCGGACAGATTCCGTAACGAGAAGAAATCTG
TTGCGTTCGGGAAGCAAGTTTCGGATCCGGTTCCGGATCGGATCGGTATG
ACGGAATCAGTTGTAGGTTTTGAAAATGGATCGCCTTGTGTTACAGTTCG
AGTTGAGGACGCGGAAGCGTCGCTAACTTCCCCTGTGACCGCCGCTCACG
GGATAGTAGATTCAGGCAAATCGGACAACAGCCTTGGAGCTGTGTTAGAG
GACGCGCTGCAGCTAAAATCGATGGGCATCAGGGTGAGTCAACACTTCTC
TTTCTATCAGTACGGGTGGGAAGGGGGTTGGTGGGGTTGTTCATTTGTTT
GTGTCTTGTGTATGTTACTCTTGACATTGAGGCAACATCATCACGTGCTC
TCTACCAGATATCATGTCTAGTCTTCTGGTCTCATGGGCTTCTCTCTTTT
CAAGAACCTCTCCTATTGTACTGCCCTGGCAAGTAGAGCCCGCGCTGTAG
AGTACCCGGAAATGCTTTATCAATCGGTGTCAAAACTACGTCGAATAAAG
CTGGCATTAAACTCTTACTCTAATCGCTTTCTAGTGAAACATTGCGTCGT
AGCAGTGGATCCCACTTTTGACGCGTACTCGAATCGTTCGCGGATTCTTG
TAAAACAATAAAACAAAATACTTCGAAGTATTAGTATATGGAGAAAATAT
CGCATTCGTGACGATTTTCGCAAATATAAGCCAAGTTCTTTACGTTGTTC
TGATTGCAAAATGGAAACTGAAGCGACCTTCACACTTTTTTGGGGGGGGG
CGATGATTTTATTGCCTCTCCCCGATAAATAACCACGCTGACATGCTCGG
ATCCTTTCATGAGACACAAGTATTTCCCCCGTCCCACCTCCCCCCCCCCA
CCAAAAAGTAGTGCACGCATGCGGTGGCTCTTCATCATGTCCTCGAATCT
TAGTTTTTTCCCCCGTGGAGGCATATTCTAATCTTTACCCTCCCGTCCGC
CAAATCATCTCTCTGGGTGTATGTCTGCAGGCTTTTCGTTCAAGCCGCAA
CGAATCTGTCGACGCGGACTACCAGTGCCTTAAGGCGGGATATTCTACGG
AATGCTCATCCTCCTCGACCTCTTTGATGCAGAACTACGCTCGCTGTATC
CGCGTAGCATCTGGCGGTGGGGAAGCATCGCTCACATTACCTACCCCTGT
GGCCGCGGTAACAAGTGTAGGGGGTGGCGGGCGAAGCCTTTTACCGGACA
GGGTTGAGTGTATGGCGGGGGCAACCCTTCTGACGGTCGATGAACCCCCA
AGCCCCGCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1021:243866..245374-

>mRNA_F-serratus_M_contig1021.292.1 ID=mRNA_F-serratus_M_contig1021.292.1|Name=mRNA_F-serratus_M_contig1021.292.1|organism=Fucus serratus male|type=CDS|length=1524bp|location=Sequence derived from alignment at F-serratus_M_contig1021:243866..245374- (Fucus serratus male)
GAAATTAGAAATACTTCAGCTTTTACGGATCCGGAATCGCCCTTGACACC
ACCACAAGACAACGACGTGGGCGGCAAGAGCGTGGGGGTGATTATTAAGA
AAATCTCGAGCAGAAGAAGAGAGCTTGAAGAACGAACGGTTTCAGGACCT
CTAGAAGATGGAAGGGTCAAAGACGCGGCGGAATCGGATACCACGCGTAA
GAGATCGTCATTGCGGACCCCGGACAGATTCCGTAACGAGAAGAAATCTG
TTGCGTTCGGGAAGCAAGTTTCGGATCCGGTTCCGGATCGGATCGGTATG
ACGGAATCAGTTGTAGGTTTTGAAAATGGATCGCCTTGTGTTACAGTTCG
AGTTGAGGACGCGGAAGCGTCGCTAACTTCCCCTGTGACCGCCGCTCACG
GGATAGTAGATTCAGGCAAATCGGACAACAGCCTTGGAGCTGTGTTAGAG
GACGCGCTGCAGCTAAAATCGATGGGCATCAGGGAAATTAGAAATACTTC
AGCTTTTACGGATCCGGAATCGCCCTTGACACCACCACAAGACAACGACG
TGGGCGGCAAGAGCGTGGGGGTGATTATTAAGAAAATCTCGAGCAGAAGA
AGAGAGCTTGAAGAACGAACGGTTTCAGGACCTCTAGAAGATGGAAGGGT
CAAAGACGCGGCGGAATCGGATACCACGCGTAAGAGATCGTCATTGCGGA
CCCCGGACAGATTCCGTAACGAGAAGAAATCTGTTGCGTTCGGGAAGCAA
GTTTCGGATCCGGTTCCGGATCGGATCGGTATGACGGAATCAGTTGTAGG
TTTTGAAAATGGATCGCCTTGTGTTACAGTTCGAGTTGAGGACGCGGAAG
CGTCGCTAACTTCCCCTGTGACCGCCGCTCACGGGATAGTAGATTCAGGC
AAATCGGACAACAGCCTTGGAGCTGTGTTAGAGGACGCGCTGCAGCTAAA
ATCGATGGGCATCAGGGCTTTTCGTTCAAGCCGCAACGAATCTGTCGACG
CGGACTACCAGTGCCTTAAGGCGGGATATTCTACGGAATGCTCATCCTCC
TCGACCTCTTTGATGCAGAACTACGCTCGCTGTATCCGCGTAGCATCTGG
CGGTGGGGAAGCATCGCTCACATTACCTACCCCTGTGGCCGCGGTAACAA
GTGTAGGGGGTGGCGGGCGAAGCCTTTTACCGGACAGGGTTGAGTGTATG
GCGGGGGCAACCCTTCTGACGGTCGATGAACCCCCAAGCCCCGCGGCTTT
TCGTTCAAGCCGCAACGAATCTGTCGACGCGGACTACCAGTGCCTTAAGG
CGGGATATTCTACGGAATGCTCATCCTCCTCGACCTCTTTGATGCAGAAC
TACGCTCGCTGTATCCGCGTAGCATCTGGCGGTGGGGAAGCATCGCTCAC
ATTACCTACCCCTGTGGCCGCGGTAACAAGTGTAGGGGGTGGCGGGCGAA
GCCTTTTACCGGACAGGGTTGAGTGTATGGCGGGGGCAACCCTTCTGACG
GTCGATGAACCCCCAAGCCCCGCG
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