mRNA_F-serratus_M_contig1020.288.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1020.288.1
Unique NamemRNA_F-serratus_M_contig1020.288.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1020.288.1 vs. uniprot
Match: A0A671PHF8_9TELE (Dolichyl-phosphate beta-glucosyltransferase n=1 Tax=Sinocyclocheilus anshuiensis TaxID=1608454 RepID=A0A671PHF8_9TELE)

HSP 1 Score: 90.9 bits (224), Expect = 2.700e-20
Identity = 40/68 (58.82%), Postives = 50/68 (73.53%), Query Frame = 1 
Query:    1 QRALYRTVLMLVFHWCVAVFCTRRIKDTQCRFKLFTRDTAAVVFGSLHLKRWAFDIEMIYICQLLGIP 204
            QR+L+RT LM  FH+ V  FC R IKDTQC FKLFTR+ A   F SLH++RWAFD+E+++I Q   IP
Sbjct:  204 QRSLFRTFLMFGFHFLVWFFCVRGIKDTQCGFKLFTREAALKTFSSLHVERWAFDVELLFIAQCFDIP 271
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BLAST of mRNA_F-serratus_M_contig1020.288.1 vs. uniprot
Match: A0A7S0C430_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C430_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 2.710e-20
Identity = 36/64 (56.25%), Postives = 50/64 (78.12%), Query Frame = 1 
Query:   16 RTVLMLVFHWCVAVFCTRRIKDTQCRFKLFTRDTAAVVFGSLHLKRWAFDIEMIYICQLLGIPM 207
            R +LM  FH+ V+V C++R+KDTQC FKLF R+ A ++F +LHL+RWAFDIE+I I + L IP+
Sbjct:    4 RIILMYAFHFFVSVLCSQRVKDTQCGFKLFNREAALIIFSNLHLRRWAFDIEIITIVEQLNIPL 67
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BLAST of mRNA_F-serratus_M_contig1020.288.1 vs. uniprot
Match: UPI00200DBAA7 (dolichyl-phosphate beta-glucosyltransferase n=1 Tax=Leguminivora glycinivorella TaxID=1035111 RepID=UPI00200DBAA7)

HSP 1 Score: 88.2 bits (217), Expect = 2.730e-20
Identity = 38/67 (56.72%), Postives = 50/67 (74.63%), Query Frame = 1 
Query:    4 RALYRTVLMLVFHWCVAVFCTRRIKDTQCRFKLFTRDTAAVVFGSLHLKRWAFDIEMIYICQLLGIP 204
            R+++R +LM  FH+ V +F  R I+DTQC FKLFTR  AA+ F SLH+ RWAFD+E++YI Q L IP
Sbjct:   72 RSIFRNILMFGFHFLVWLFTVRGIRDTQCGFKLFTRRAAAIAFSSLHVNRWAFDVELLYIAQKLNIP 138
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BLAST of mRNA_F-serratus_M_contig1020.288.1 vs. uniprot
Match: A0A3P8U062_AMPPE (Dolichyl-phosphate beta-glucosyltransferase n=4 Tax=Percomorphaceae TaxID=1489872 RepID=A0A3P8U062_AMPPE)

HSP 1 Score: 90.9 bits (224), Expect = 2.730e-20
Identity = 40/68 (58.82%), Postives = 50/68 (73.53%), Query Frame = 1 
Query:    1 QRALYRTVLMLVFHWCVAVFCTRRIKDTQCRFKLFTRDTAAVVFGSLHLKRWAFDIEMIYICQLLGIP 204
            QR+++RT LM  FH+ V  FC R IKDTQC FKLFTR+ A   F SLH++RWAFD+E++YI Q   IP
Sbjct:  205 QRSMFRTFLMYGFHFLVWFFCVRGIKDTQCGFKLFTREAALKTFSSLHVERWAFDVELLYIAQCFKIP 272
[Close]
BLAST of mRNA_F-serratus_M_contig1020.288.1 vs. uniprot
Match: A0A671WXH6_SPAAU (Dolichyl-phosphate beta-glucosyltransferase n=5 Tax=Sparidae TaxID=8169 RepID=A0A671WXH6_SPAAU)

HSP 1 Score: 90.9 bits (224), Expect = 2.730e-20
Identity = 40/68 (58.82%), Postives = 50/68 (73.53%), Query Frame = 1 
Query:    1 QRALYRTVLMLVFHWCVAVFCTRRIKDTQCRFKLFTRDTAAVVFGSLHLKRWAFDIEMIYICQLLGIP 204
            QR+++RT LM  FH+ V  FC R IKDTQC FKLFTR+ A   F SLH++RWAFD+E++YI Q   IP
Sbjct:  205 QRSMFRTFLMYGFHFLVWFFCVRGIKDTQCGFKLFTREAALKTFSSLHVERWAFDVELLYIAQCFKIP 272
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1020.288.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A671PHF8_9TELE2.700e-2058.82Dolichyl-phosphate beta-glucosyltransferase n=1 Ta... [more]
A0A7S0C430_9STRA2.710e-2056.25Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
UPI00200DBAA72.730e-2056.72dolichyl-phosphate beta-glucosyltransferase n=1 Ta... [more]
A0A3P8U062_AMPPE2.730e-2058.82Dolichyl-phosphate beta-glucosyltransferase n=4 Ta... [more]
A0A671WXH6_SPAAU2.730e-2058.82Dolichyl-phosphate beta-glucosyltransferase n=5 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1020contigF-serratus_M_contig1020:322176..323146 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score113.6
Seed ortholog evalue3.2e-23
Seed eggNOG ortholog2880.D8LR86
Preferred nameALG5
KEGG rclassRC00005,RC02795
KEGG koko:K00729,ko:K03027
KEGG ReactionR00435,R00441,R00442,R00443,R01005
KEGG Pathwayko00230,ko00240,ko00510,ko01100,ko03020,ko04623,ko05169,map00230,map00240,map00510,map01100,map03020,map04623,map05169
KEGG ModuleM00055,M00181,M00182
Hectar predicted targeting categoryother localisation
GOsGO:0001667,GO:0001703,GO:0001704,GO:0001707,GO:0003002,GO:0003674,GO:0003824,GO:0004576,GO:0004581,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006486,GO:0006487,GO:0006488,GO:0006490,GO:0006493,GO:0006629,GO:0006807,GO:0006928,GO:0006996,GO:0007009,GO:0007029,GO:0007030,GO:0007043,GO:0007275,GO:0007368,GO:0007369,GO:0007389,GO:0007498,GO:0007509,GO:0008078,GO:0008150,GO:0008152,GO:0008194,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009653,GO:0009790,GO:0009799,GO:0009855,GO:0009888,GO:0009953,GO:0009987,GO:0010004,GO:0010256,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0016477,GO:0016740,GO:0016757,GO:0016758,GO:0018193,GO:0018196,GO:0018279,GO:0019538,GO:0019991,GO:0022607,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0032501,GO:0032502,GO:0034329,GO:0034330,GO:0034645,GO:0035251,GO:0036211,GO:0040003,GO:0040011,GO:0042074,GO:0042175,GO:0042335,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043297,GO:0043412,GO:0043413,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045216,GO:0046527,GO:0048332,GO:0048598,GO:0048646,GO:0048729,GO:0048856,GO:0048870,GO:0051179,GO:0051674,GO:0061024,GO:0070085,GO:0071704,GO:0071840,GO:0090130,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.dolichyl-phosphate beta-glucosyltransferase activity
EggNOG OGsCOG0463@1,KOG2977@2759
EC2.4.1.117
COG Functional cat.M
CAZyGT2
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko01003,ko03021
Exons2
Model size207
Cds size180
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1020.288.1prot_F-serratus_M_contig1020.288.1Fucus serratus malepolypeptideF-serratus_M_contig1020 322176..323119 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928824.8167155-CDS-F-serratus_M_contig1020:322175..3222911622928824.8167155-CDS-F-serratus_M_contig1020:322175..322291Fucus serratus maleCDSF-serratus_M_contig1020 322176..322291 -
1690962589.5035691-CDS-F-serratus_M_contig1020:322175..3222911690962589.5035691-CDS-F-serratus_M_contig1020:322175..322291Fucus serratus maleCDSF-serratus_M_contig1020 322176..322291 -
1622928824.8357432-CDS-F-serratus_M_contig1020:323055..3231191622928824.8357432-CDS-F-serratus_M_contig1020:323055..323119Fucus serratus maleCDSF-serratus_M_contig1020 323056..323119 -
1690962589.5175645-CDS-F-serratus_M_contig1020:323055..3231191690962589.5175645-CDS-F-serratus_M_contig1020:323055..323119Fucus serratus maleCDSF-serratus_M_contig1020 323056..323119 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928824.855434-UTR-F-serratus_M_contig1020:323119..3231461622928824.855434-UTR-F-serratus_M_contig1020:323119..323146Fucus serratus maleUTRF-serratus_M_contig1020 323120..323146 -
1690962589.5259004-UTR-F-serratus_M_contig1020:323119..3231461690962589.5259004-UTR-F-serratus_M_contig1020:323119..323146Fucus serratus maleUTRF-serratus_M_contig1020 323120..323146 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1020.288.1

>prot_F-serratus_M_contig1020.288.1 ID=prot_F-serratus_M_contig1020.288.1|Name=mRNA_F-serratus_M_contig1020.288.1|organism=Fucus serratus male|type=polypeptide|length=60bp
MLVFHWCVAVFCTRRIKDTQCRFKLFTRDTAAVVFGSLHLKRWAFDIEMI
YICQLLGIPM
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mRNA from alignment at F-serratus_M_contig1020:322176..323146-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1020.288.1 ID=mRNA_F-serratus_M_contig1020.288.1|Name=mRNA_F-serratus_M_contig1020.288.1|organism=Fucus serratus male|type=mRNA|length=971bp|location=Sequence derived from alignment at F-serratus_M_contig1020:322176..323146- (Fucus serratus male)
CAGCGAGCGCTGTACAGGACGGTTCTGATGTTGGTCTTCCACTGGTGCGT
TGCGGTGTTTTGCACTCGGCGAATCAAGGACACCCAGTGCAGTAAGTGGG
TCTAGGGAGACGCTCTTGATCTGCGCGAACTCTGCCGGTGTGCATGTGAA
ATGCACGGCTACTGGTCGTCATCTGTCGTAGAAAGTTGTTTTAAAAACAG
CCTTATCATAACGGCGGAAGACACTTTGTTTGTTTTCTATCGACCTATAT
TATTGACTCGCTCCACACGTACACACGGGTGTATGATTGATCCCTTAATA
ACAATAAGTATGATTGATCCCTTAATAACAATAAGTATGATTGATCCCTT
AATAGCAATACCCTCTTCTTGGGAGGACCAATGCGAGTGGCATCGAATGG
CTTGAATGACATGACAGTTTGTTGCCGGAAATTGCACGTTATGTGCAATT
GGAAAAACATTTTCGCACGTACACGCACGCATACACAACCGCTGGTGGTA
AAGAGAGAGTAGAGGGTGAAGTAGTATGAATACAACAGAGCACGAGTACA
TATTATAGTATAGTATGGGCTACAGTACTATCAGGTATAGAATTTTAGTT
GAGCATATTTCAAGGGTGGTGGGTAAAAAACGGACAAGGAACGATAGATA
ATAAGAGAGAGAGGAACAATATATAATCATACATATATATATATATATAT
ATAGACTACATGTGTAGCTCTAGTCGTACAGTACAGAGCATTAATATTAT
TAGAGTATTAGAGTCGTTTTTTGTTGTCGAGAAAATGCCGCGATGGTGCT
CACATCATAGAGCGGTTGACGTCTTGAGCACACCCTTGTCCGTTGTATTT
CCCAGGGTTCAAGCTCTTCACGAGGGACACCGCTGCGGTCGTGTTCGGCT
CTCTGCACCTCAAGCGCTGGGCGTTCGACATCGAGATGATCTACATCTGC
CAGCTCTTGGGCATTCCCATG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1020:322176..323146-

>mRNA_F-serratus_M_contig1020.288.1 ID=mRNA_F-serratus_M_contig1020.288.1|Name=mRNA_F-serratus_M_contig1020.288.1|organism=Fucus serratus male|type=CDS|length=360bp|location=Sequence derived from alignment at F-serratus_M_contig1020:322176..323146- (Fucus serratus male)
ATGTTGGTCTTCCACTGGTGCGTTGCGGTGTTTTGCACTCGGCGAATCAA
GGACACCCAGTGCAATGTTGGTCTTCCACTGGTGCGTTGCGGTGTTTTGC
ACTCGGCGAATCAAGGACACCCAGTGCAGGTTCAAGCTCTTCACGAGGGA
CACCGCTGCGGTCGTGTTCGGCTCTCTGCACCTCAAGCGCTGGGCGTTCG
ACATCGAGATGATCTACATCTGCCAGCTCTTGGGCATTCCCATGGGTTCA
AGCTCTTCACGAGGGACACCGCTGCGGTCGTGTTCGGCTCTCTGCACCTC
AAGCGCTGGGCGTTCGACATCGAGATGATCTACATCTGCCAGCTCTTGGG
CATTCCCATG
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