mRNA_F-serratus_M_contig1020.288.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1020.288.1
Unique NamemRNA_F-serratus_M_contig1020.288.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1020.288.1 vs. uniprot
Match: A0A6H5KX71_9PHAE (Dolichyl-phosphate beta-glucosyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KX71_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 3.410e-33
Identity = 53/69 (76.81%), Postives = 63/69 (91.30%), Query Frame = 1 
Query:    1 QRALYRTVLMLVFHWCVAVFCTRRIKDTQCRFKLFTRDTAAVVFGSLHLKRWAFDIEMIYICQLLGIPM 207
            +RAL+RT+LM VFHWCV++ CTR IKDTQC FKLFTRDTA +VF SLHL+RWAFDIE+IYICQL+G+PM
Sbjct:  233 KRALHRTILMFVFHWCVSILCTRTIKDTQCGFKLFTRDTAVLVFSSLHLQRWAFDIELIYICQLMGVPM 301
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BLAST of mRNA_F-serratus_M_contig1020.288.1 vs. uniprot
Match: A0A835ZBS6_9STRA (Dolichyl-phosphate beta-glucosyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBS6_9STRA)

HSP 1 Score: 108 bits (269), Expect = 1.410e-26
Identity = 44/68 (64.71%), Postives = 57/68 (83.82%), Query Frame = 1 
Query:    4 RALYRTVLMLVFHWCVAVFCTRRIKDTQCRFKLFTRDTAAVVFGSLHLKRWAFDIEMIYICQLLGIPM 207
            RA YRT++M VFHWCV + C++RI+DTQC FKLFTR  A V+F +LHL+RWAFDIE++Y+C+  GIPM
Sbjct:  216 RAWYRTIMMRVFHWCVVLLCSKRIRDTQCGFKLFTRQAAHVLFTTLHLERWAFDIELVYLCERFGIPM 283
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BLAST of mRNA_F-serratus_M_contig1020.288.1 vs. uniprot
Match: A0A2G8KI16_STIJA (Dolichyl-phosphate beta-glucosyltransferase n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8KI16_STIJA)

HSP 1 Score: 94.4 bits (233), Expect = 1.390e-21
Identity = 41/69 (59.42%), Postives = 53/69 (76.81%), Query Frame = 1 
Query:    1 QRALYRTVLMLVFHWCVAVFCTRRIKDTQCRFKLFTRDTAAVVFGSLHLKRWAFDIEMIYICQLLGIPM 207
            QR+ +RT+LM  FH+ V   C R IKDTQC FKL TR+ AAV+F ++H+ RWAFD+E++YI Q LGIPM
Sbjct:  207 QRSSFRTILMYGFHFFVWFLCVRSIKDTQCGFKLMTRNAAAVLFSNMHVNRWAFDVELLYIAQYLGIPM 275
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BLAST of mRNA_F-serratus_M_contig1020.288.1 vs. uniprot
Match: A0A3B4CVF8_PYGNA (Dolichyl-phosphate beta-glucosyltransferase n=3 Tax=Serrasalmidae TaxID=42495 RepID=A0A3B4CVF8_PYGNA)

HSP 1 Score: 92.8 bits (229), Expect = 5.770e-21
Identity = 40/68 (58.82%), Postives = 52/68 (76.47%), Query Frame = 1 
Query:    1 QRALYRTVLMLVFHWCVAVFCTRRIKDTQCRFKLFTRDTAAVVFGSLHLKRWAFDIEMIYICQLLGIP 204
            QR+L+RT+LM  FH+ V  FC + IKDTQC FKLFTR+ A   F SLH++RWAFD+E++Y+ Q L IP
Sbjct:  214 QRSLFRTILMYGFHFLVWFFCVKGIKDTQCGFKLFTREAALRTFSSLHVERWAFDVELLYVAQCLKIP 281
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BLAST of mRNA_F-serratus_M_contig1020.288.1 vs. uniprot
Match: F2UAQ7_SALR5 (Dolichyl-phosphate beta-glucosyltransferase n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UAQ7_SALR5)

HSP 1 Score: 89.4 bits (220), Expect = 5.880e-21
Identity = 37/68 (54.41%), Postives = 51/68 (75.00%), Query Frame = 1 
Query:    1 QRALYRTVLMLVFHWCVAVFCTRRIKDTQCRFKLFTRDTAAVVFGSLHLKRWAFDIEMIYICQLLGIP 204
             R+++RTVLM  FH+ V+  C + IKDTQC FKLFTR TA  +F  +H++RWAFD+E++Y+ Q LG P
Sbjct:   55 SRSVFRTVLMFGFHFLVSFLCVKGIKDTQCGFKLFTRKTAKALFTRMHIERWAFDVELLYMAQRLGFP 122
[Close]
BLAST of mRNA_F-serratus_M_contig1020.288.1 vs. uniprot
Match: UPI000C756B6F (dolichyl-phosphate beta-glucosyltransferase-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C756B6F)

HSP 1 Score: 92.4 bits (228), Expect = 7.200e-21
Identity = 39/68 (57.35%), Postives = 51/68 (75.00%), Query Frame = 1 
Query:    1 QRALYRTVLMLVFHWCVAVFCTRRIKDTQCRFKLFTRDTAAVVFGSLHLKRWAFDIEMIYICQLLGIP 204
             R  +RTVLM  FH+CV +F  + I+DTQC FKL TRDT  +VF SLH++RWAFD+EM+ I ++L IP
Sbjct:  201 SRTFFRTVLMYGFHFCVWIFAVKSIRDTQCGFKLLTRDTGRIVFKSLHIERWAFDVEMLKIAEMLSIP 268
[Close]
BLAST of mRNA_F-serratus_M_contig1020.288.1 vs. uniprot
Match: A0A7M5URC6_9CNID (Dolichyl-phosphate beta-glucosyltransferase n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5URC6_9CNID)

HSP 1 Score: 92.4 bits (228), Expect = 8.740e-21
Identity = 39/68 (57.35%), Postives = 51/68 (75.00%), Query Frame = 1 
Query:    1 QRALYRTVLMLVFHWCVAVFCTRRIKDTQCRFKLFTRDTAAVVFGSLHLKRWAFDIEMIYICQLLGIP 204
            QR+ +R +LM  FH+ V+  C + IKDTQC FKLFTR  A  +F SLH++RWAFD+E++YI Q LGIP
Sbjct:  214 QRSFFRNILMFGFHFLVSFLCVKDIKDTQCGFKLFTRKAALTLFSSLHVERWAFDVELLYIAQRLGIP 281
[Close]
BLAST of mRNA_F-serratus_M_contig1020.288.1 vs. uniprot
Match: A0A3B4B0D3_9GOBI (Dolichyl-phosphate beta-glucosyltransferase n=5 Tax=Periophthalmus magnuspinnatus TaxID=409849 RepID=A0A3B4B0D3_9GOBI)

HSP 1 Score: 92.0 bits (227), Expect = 1.020e-20
Identity = 41/68 (60.29%), Postives = 50/68 (73.53%), Query Frame = 1 
Query:    1 QRALYRTVLMLVFHWCVAVFCTRRIKDTQCRFKLFTRDTAAVVFGSLHLKRWAFDIEMIYICQLLGIP 204
            QR+L+RT LML FH+ V  FC R IKDTQC FKLFTR+ A   F  LH++RWAFD+E++YI Q   IP
Sbjct:  206 QRSLFRTFLMLGFHFLVWFFCVRGIKDTQCGFKLFTREAAVKTFSCLHVERWAFDVELLYIAQCFKIP 273
[Close]
BLAST of mRNA_F-serratus_M_contig1020.288.1 vs. uniprot
Match: A0A2R5LKZ9_9ACAR (Dolichyl-phosphate beta-glucosyltransferase n=1 Tax=Ornithodoros turicata TaxID=34597 RepID=A0A2R5LKZ9_9ACAR)

HSP 1 Score: 92.0 bits (227), Expect = 1.070e-20
Identity = 39/68 (57.35%), Postives = 53/68 (77.94%), Query Frame = 1 
Query:    4 RALYRTVLMLVFHWCVAVFCTRRIKDTQCRFKLFTRDTAAVVFGSLHLKRWAFDIEMIYICQLLGIPM 207
            R+++RT+LM  FH+ V +F  R I+DTQC FKLFTR+ A  +F SLH++RWAFD+EM+Y+ Q LG PM
Sbjct:  210 RSIFRTILMFGFHFLVWLFAVRGIRDTQCGFKLFTREAAKYLFASLHVERWAFDVEMLYLAQKLGFPM 277
[Close]
BLAST of mRNA_F-serratus_M_contig1020.288.1 vs. uniprot
Match: A0A6F9BAM1_9TELE (Uncharacterized protein n=1 Tax=Coregonus sp. 'balchen' TaxID=861768 RepID=A0A6F9BAM1_9TELE)

HSP 1 Score: 89.4 bits (220), Expect = 1.080e-20
Identity = 40/67 (59.70%), Postives = 49/67 (73.13%), Query Frame = 1 
Query:    4 RALYRTVLMLVFHWCVAVFCTRRIKDTQCRFKLFTRDTAAVVFGSLHLKRWAFDIEMIYICQLLGIP 204
            R+L+RT LM  FH+ V  FC R IKDTQC FKLFTR+ A   F SLH++RWAFD+E++YI Q   IP
Sbjct:   75 RSLFRTFLMYGFHFLVWFFCVRGIKDTQCGFKLFTREAALKTFSSLHVERWAFDVELLYIAQCFKIP 141
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1020.288.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KX71_9PHAE3.410e-3376.81Dolichyl-phosphate beta-glucosyltransferase n=2 Ta... [more]
A0A835ZBS6_9STRA1.410e-2664.71Dolichyl-phosphate beta-glucosyltransferase n=1 Ta... [more]
A0A2G8KI16_STIJA1.390e-2159.42Dolichyl-phosphate beta-glucosyltransferase n=1 Ta... [more]
A0A3B4CVF8_PYGNA5.770e-2158.82Dolichyl-phosphate beta-glucosyltransferase n=3 Ta... [more]
F2UAQ7_SALR55.880e-2154.41Dolichyl-phosphate beta-glucosyltransferase n=1 Ta... [more]
UPI000C756B6F7.200e-2157.35dolichyl-phosphate beta-glucosyltransferase-like n... [more]
A0A7M5URC6_9CNID8.740e-2157.35Dolichyl-phosphate beta-glucosyltransferase n=1 Ta... [more]
A0A3B4B0D3_9GOBI1.020e-2060.29Dolichyl-phosphate beta-glucosyltransferase n=5 Ta... [more]
A0A2R5LKZ9_9ACAR1.070e-2057.35Dolichyl-phosphate beta-glucosyltransferase n=1 Ta... [more]
A0A6F9BAM1_9TELE1.080e-2059.70Uncharacterized protein n=1 Tax=Coregonus sp. 'bal... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1020contigF-serratus_M_contig1020:322176..323146 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score113.6
Seed ortholog evalue3.2e-23
Seed eggNOG ortholog2880.D8LR86
Preferred nameALG5
KEGG rclassRC00005,RC02795
KEGG koko:K00729,ko:K03027
KEGG ReactionR00435,R00441,R00442,R00443,R01005
KEGG Pathwayko00230,ko00240,ko00510,ko01100,ko03020,ko04623,ko05169,map00230,map00240,map00510,map01100,map03020,map04623,map05169
KEGG ModuleM00055,M00181,M00182
Hectar predicted targeting categoryother localisation
GOsGO:0001667,GO:0001703,GO:0001704,GO:0001707,GO:0003002,GO:0003674,GO:0003824,GO:0004576,GO:0004581,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006486,GO:0006487,GO:0006488,GO:0006490,GO:0006493,GO:0006629,GO:0006807,GO:0006928,GO:0006996,GO:0007009,GO:0007029,GO:0007030,GO:0007043,GO:0007275,GO:0007368,GO:0007369,GO:0007389,GO:0007498,GO:0007509,GO:0008078,GO:0008150,GO:0008152,GO:0008194,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009653,GO:0009790,GO:0009799,GO:0009855,GO:0009888,GO:0009953,GO:0009987,GO:0010004,GO:0010256,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0016477,GO:0016740,GO:0016757,GO:0016758,GO:0018193,GO:0018196,GO:0018279,GO:0019538,GO:0019991,GO:0022607,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0032501,GO:0032502,GO:0034329,GO:0034330,GO:0034645,GO:0035251,GO:0036211,GO:0040003,GO:0040011,GO:0042074,GO:0042175,GO:0042335,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043297,GO:0043412,GO:0043413,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045216,GO:0046527,GO:0048332,GO:0048598,GO:0048646,GO:0048729,GO:0048856,GO:0048870,GO:0051179,GO:0051674,GO:0061024,GO:0070085,GO:0071704,GO:0071840,GO:0090130,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.dolichyl-phosphate beta-glucosyltransferase activity
EggNOG OGsCOG0463@1,KOG2977@2759
EC2.4.1.117
COG Functional cat.M
CAZyGT2
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko01003,ko03021
Exons2
Model size207
Cds size180
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1020.288.1prot_F-serratus_M_contig1020.288.1Fucus serratus malepolypeptideF-serratus_M_contig1020 322176..323119 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928824.8167155-CDS-F-serratus_M_contig1020:322175..3222911622928824.8167155-CDS-F-serratus_M_contig1020:322175..322291Fucus serratus maleCDSF-serratus_M_contig1020 322176..322291 -
1690962589.5035691-CDS-F-serratus_M_contig1020:322175..3222911690962589.5035691-CDS-F-serratus_M_contig1020:322175..322291Fucus serratus maleCDSF-serratus_M_contig1020 322176..322291 -
1622928824.8357432-CDS-F-serratus_M_contig1020:323055..3231191622928824.8357432-CDS-F-serratus_M_contig1020:323055..323119Fucus serratus maleCDSF-serratus_M_contig1020 323056..323119 -
1690962589.5175645-CDS-F-serratus_M_contig1020:323055..3231191690962589.5175645-CDS-F-serratus_M_contig1020:323055..323119Fucus serratus maleCDSF-serratus_M_contig1020 323056..323119 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928824.855434-UTR-F-serratus_M_contig1020:323119..3231461622928824.855434-UTR-F-serratus_M_contig1020:323119..323146Fucus serratus maleUTRF-serratus_M_contig1020 323120..323146 -
1690962589.5259004-UTR-F-serratus_M_contig1020:323119..3231461690962589.5259004-UTR-F-serratus_M_contig1020:323119..323146Fucus serratus maleUTRF-serratus_M_contig1020 323120..323146 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1020.288.1

>prot_F-serratus_M_contig1020.288.1 ID=prot_F-serratus_M_contig1020.288.1|Name=mRNA_F-serratus_M_contig1020.288.1|organism=Fucus serratus male|type=polypeptide|length=60bp
MLVFHWCVAVFCTRRIKDTQCRFKLFTRDTAAVVFGSLHLKRWAFDIEMI
YICQLLGIPM
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mRNA from alignment at F-serratus_M_contig1020:322176..323146-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1020.288.1 ID=mRNA_F-serratus_M_contig1020.288.1|Name=mRNA_F-serratus_M_contig1020.288.1|organism=Fucus serratus male|type=mRNA|length=971bp|location=Sequence derived from alignment at F-serratus_M_contig1020:322176..323146- (Fucus serratus male)
CAGCGAGCGCTGTACAGGACGGTTCTGATGTTGGTCTTCCACTGGTGCGT
TGCGGTGTTTTGCACTCGGCGAATCAAGGACACCCAGTGCAGTAAGTGGG
TCTAGGGAGACGCTCTTGATCTGCGCGAACTCTGCCGGTGTGCATGTGAA
ATGCACGGCTACTGGTCGTCATCTGTCGTAGAAAGTTGTTTTAAAAACAG
CCTTATCATAACGGCGGAAGACACTTTGTTTGTTTTCTATCGACCTATAT
TATTGACTCGCTCCACACGTACACACGGGTGTATGATTGATCCCTTAATA
ACAATAAGTATGATTGATCCCTTAATAACAATAAGTATGATTGATCCCTT
AATAGCAATACCCTCTTCTTGGGAGGACCAATGCGAGTGGCATCGAATGG
CTTGAATGACATGACAGTTTGTTGCCGGAAATTGCACGTTATGTGCAATT
GGAAAAACATTTTCGCACGTACACGCACGCATACACAACCGCTGGTGGTA
AAGAGAGAGTAGAGGGTGAAGTAGTATGAATACAACAGAGCACGAGTACA
TATTATAGTATAGTATGGGCTACAGTACTATCAGGTATAGAATTTTAGTT
GAGCATATTTCAAGGGTGGTGGGTAAAAAACGGACAAGGAACGATAGATA
ATAAGAGAGAGAGGAACAATATATAATCATACATATATATATATATATAT
ATAGACTACATGTGTAGCTCTAGTCGTACAGTACAGAGCATTAATATTAT
TAGAGTATTAGAGTCGTTTTTTGTTGTCGAGAAAATGCCGCGATGGTGCT
CACATCATAGAGCGGTTGACGTCTTGAGCACACCCTTGTCCGTTGTATTT
CCCAGGGTTCAAGCTCTTCACGAGGGACACCGCTGCGGTCGTGTTCGGCT
CTCTGCACCTCAAGCGCTGGGCGTTCGACATCGAGATGATCTACATCTGC
CAGCTCTTGGGCATTCCCATG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1020:322176..323146-

>mRNA_F-serratus_M_contig1020.288.1 ID=mRNA_F-serratus_M_contig1020.288.1|Name=mRNA_F-serratus_M_contig1020.288.1|organism=Fucus serratus male|type=CDS|length=360bp|location=Sequence derived from alignment at F-serratus_M_contig1020:322176..323146- (Fucus serratus male)
ATGTTGGTCTTCCACTGGTGCGTTGCGGTGTTTTGCACTCGGCGAATCAA
GGACACCCAGTGCAATGTTGGTCTTCCACTGGTGCGTTGCGGTGTTTTGC
ACTCGGCGAATCAAGGACACCCAGTGCAGGTTCAAGCTCTTCACGAGGGA
CACCGCTGCGGTCGTGTTCGGCTCTCTGCACCTCAAGCGCTGGGCGTTCG
ACATCGAGATGATCTACATCTGCCAGCTCTTGGGCATTCCCATGGGTTCA
AGCTCTTCACGAGGGACACCGCTGCGGTCGTGTTCGGCTCTCTGCACCTC
AAGCGCTGGGCGTTCGACATCGAGATGATCTACATCTGCCAGCTCTTGGG
CATTCCCATG
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