mRNA_F-serratus_M_contig1020.282.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1020.282.1
Unique NamemRNA_F-serratus_M_contig1020.282.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1020.282.1 vs. uniprot
Match: A0A6H5J567_9PHAE (AMMECR1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J567_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 5.250e-44
Identity = 73/122 (59.84%), Postives = 89/122 (72.95%), Query Frame = 1 
Query:    7 RPDPRESFYSAPVGVLRGLHPCVCCFDALMRHLHDGSDGEALARKKSWEHPREAAVDPEVSFFVGWESPDRDLGRYVTRGFIGSFTPRPFQPALADYSVRAASQDPKFWGLGWAQVPGTRCR 372
            RPD RE  Y AP+ VL+  HPCV CFDALM HL DG+  + L R+  W      A DP V+FF+ WE+ DR LGR+V  GF GSFTP PF+PALA+Y+V+AA +DPKFWGLGWAQ+P TRC+
Sbjct:  603 RPDTREQCYGAPIEVLKSFHPCVRCFDALMGHLRDGTGAQELRRRTPWGSTA-VAGDPHVAFFIRWETMDRRLGRFVPTGFRGSFTPSPFRPALAEYAVKAAIEDPKFWGLGWAQIPDTRCK 723
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BLAST of mRNA_F-serratus_M_contig1020.282.1 vs. uniprot
Match: D7FTC2_ECTSI (AMMECR1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTC2_ECTSI)

HSP 1 Score: 160 bits (405), Expect = 6.250e-43
Identity = 75/130 (57.69%), Postives = 92/130 (70.77%), Query Frame = 1 
Query:    7 RPDPRESFYSAPVGVLRGLHPCVCCFDALMRHLHDGSDGEALARKKSWEHPREAAVDPEVSFFVGWESPDRDLGRYVTRGFIGSFTPRPFQPALADYSVRAASQDPKFWGLGWAQVPGTRCRVIVITNFE 396
            RPD RE  Y AP+ VL+  HPCV CFDALM HL DG+  E L R+ S      AA DP V+FFV WE+ DR LGR+  RGF+GSFTP PF+PALA+Y+V+AA++DPKFWGLGWA++P T   V+     E
Sbjct:  578 RPDTRERCYDAPIEVLKSFHPCVRCFDALMGHLRDGTGAEELRRRTS-SGSTVAAGDPHVAFFVRWETMDRGLGRFTPRGFMGSFTPSPFRPALAEYAVKAATEDPKFWGLGWARIPDTSYLVVRPVQHE 706
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1020.282.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J567_9PHAE5.250e-4459.84AMMECR1 domain-containing protein n=1 Tax=Ectocarp... [more]
D7FTC2_ECTSI6.250e-4357.69AMMECR1 domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1020contigF-serratus_M_contig1020:93453..95458 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score162.9
Seed ortholog evalue1.1e-37
Seed eggNOG ortholog2880.D7FTC2
Preferred nameAMMECR1L
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006950,GO:0006970,GO:0008150,GO:0009628,GO:0009651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0050896
EggNOG free text desc.AMMECR1
EggNOG OGsCOG2078@1,KOG3274@2759
Ec32 ortholog descriptionAMMECR1 domain
Ec32 orthologEc-21_000800.1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size435
Cds size435
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1020.282.1prot_F-serratus_M_contig1020.282.1Fucus serratus malepolypeptideF-serratus_M_contig1020 93453..95458 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928823.7505856-CDS-F-serratus_M_contig1020:93452..935221622928823.7505856-CDS-F-serratus_M_contig1020:93452..93522Fucus serratus maleCDSF-serratus_M_contig1020 93453..93522 -
1690962589.0742323-CDS-F-serratus_M_contig1020:93452..935221690962589.0742323-CDS-F-serratus_M_contig1020:93452..93522Fucus serratus maleCDSF-serratus_M_contig1020 93453..93522 -
1622928823.7715974-CDS-F-serratus_M_contig1020:94340..945051622928823.7715974-CDS-F-serratus_M_contig1020:94340..94505Fucus serratus maleCDSF-serratus_M_contig1020 94341..94505 -
1690962589.0840502-CDS-F-serratus_M_contig1020:94340..945051690962589.0840502-CDS-F-serratus_M_contig1020:94340..94505Fucus serratus maleCDSF-serratus_M_contig1020 94341..94505 -
1622928823.7907436-CDS-F-serratus_M_contig1020:94990..950811622928823.7907436-CDS-F-serratus_M_contig1020:94990..95081Fucus serratus maleCDSF-serratus_M_contig1020 94991..95081 -
1690962589.0916839-CDS-F-serratus_M_contig1020:94990..950811690962589.0916839-CDS-F-serratus_M_contig1020:94990..95081Fucus serratus maleCDSF-serratus_M_contig1020 94991..95081 -
1622928823.810564-CDS-F-serratus_M_contig1020:95349..954581622928823.810564-CDS-F-serratus_M_contig1020:95349..95458Fucus serratus maleCDSF-serratus_M_contig1020 95350..95458 -
1690962589.1017022-CDS-F-serratus_M_contig1020:95349..954581690962589.1017022-CDS-F-serratus_M_contig1020:95349..95458Fucus serratus maleCDSF-serratus_M_contig1020 95350..95458 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1020.282.1

>prot_F-serratus_M_contig1020.282.1 ID=prot_F-serratus_M_contig1020.282.1|Name=mRNA_F-serratus_M_contig1020.282.1|organism=Fucus serratus male|type=polypeptide|length=145bp
APRPDPRESFYSAPVGVLRGLHPCVCCFDALMRHLHDGSDGEALARKKSW
EHPREAAVDPEVSFFVGWESPDRDLGRYVTRGFIGSFTPRPFQPALADYS
VRAASQDPKFWGLGWAQVPGTRCRVIVITNFEVAQVVTDSPGAI*
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mRNA from alignment at F-serratus_M_contig1020:93453..95458-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1020.282.1 ID=mRNA_F-serratus_M_contig1020.282.1|Name=mRNA_F-serratus_M_contig1020.282.1|organism=Fucus serratus male|type=mRNA|length=2006bp|location=Sequence derived from alignment at F-serratus_M_contig1020:93453..95458- (Fucus serratus male)
GCACCGCGTCCAGATCCTCGGGAATCGTTCTACTCCGCTCCCGTCGGGGT
GCTGAGGGGTCTCCACCCTTGCGTTTGTTGCTTCGACGCGCTCATGCGCC
ATCTGCACGGTGAGAGAGAGACTCCCCCCTCGGCCCCGCCCCCGTTCCCC
CTGTTTTTGTTCATTGTAAACCCCTCCTAGTGACAAATTTTCAAATGACC
ACACATGTTTCGTTCATCATAAGAGCCTTGGATAGATCACGCCTTGCCCG
GGAGGATAGCACCTCTGCGGGGCACCCGGATGGTGAGGGTGGTAAGAACT
CTGCTACTGCCCATGATAATTCAATTCTTCTGTCGGCCAAAAACATTTTT
CCCGCTAACATTAATCTTCTGCTGCAGACGGATCGGACGGTGAAGCTCTT
GCTCGGAAAAAATCTTGGGAACATCCCAGGGAAGCGGCGGTTGATCCAGA
AGTTTCTTTTTTCGTCGGGTAATTTGCTTCGCTTCTTTTCGAAAATAAAT
GCAATGTGACCGATTCATCGCTCCCGAGACAGTTCTGAAAATACCGTGTT
GGGGCGTTTGCCGGGACTTGAACAACCTCCTATACAGTAGAAATTCTGGG
TGTTAAGTTTCCGTCTGACAAGACTCTGACAAAATATATTACAGGTATAT
CTTCGTTTTAATATTAACTCTTGGGTAGGCATCATCCGACATTATTGGGC
AAATGTGTGATATCTAGAGCTTCTATGCTATCTCGGACCAACCAATAGAT
GATTTATGAGTTCGAGGCGTAGGCTCGCCACGACGACCATTGCGTAAAGT
CTTCATCTTTGTCTACCCTTACTTGTATCAAGAGAGCTTCCTCGAGGAAG
ACGTGGAAAGGGTCAAATAAGCTGCAGGAGGAAATACTTCCCTTTGGTGT
GTCCTCACGATAACAACGCAGCGCGATTGTCTTCCGCCCGCCGACCGTAC
AAGGTGGGAATCGCCAGACAGAGACCTCGGGCGCTATGTAACTCGAGGGT
TCATCGGTAGCTTCACACCCAGGCCTTTCCAGCCAGCTCTGGCAGATTAC
TCCGTCAGGGCGGCCAGTCAGGATCCCAAGTTTTGGGGCCTTGGTTGGGC
TCAAGTCCCGGGTACGAGGTAAGCCAAGGGATCTCCCTGTGATGAGTTCT
TCGTTCAATTCTCATGTTTTATATCCAGACGGGTCTCCATTTTCCCCCTT
ACTCTCCATCACCATCGACTGAGCTCTGCCATGGGTGCGGTTGGGGCGCT
TTAGATTGTGTAGCGCTGCGTTGTACCGAGTGAGTAGGGGGCATGTGGAG
GTTATTATATTATCAGTCGTTATCCGCCCCGAGGGGTGCATATCATGTTG
GTCTGGTGGTTCTTTCTGCTTGGGGGATGTTTTTTAGTAGATCTACGTAA
TACACATAATATATATACCCTCCTGCATAGTATAAACTCTTCACTCAGAC
ACCCATGAACGAACGCCCAGAGACAGAACACGAGAGAGAATATTATAATG
ATTGCTCTAGGTACAGTCGACGCCAATATTATAATGATTGCTCTAGGGCT
TTGACAGAAACTCACGCGTAATTGTAGAAGATAGTTCCTGGTAGTAATTG
CTGACGGCCGTAGATCCCACAAGCGCTCGTAAACCTTTTCTTCGTTAGTC
GTTGCTTTCAGGAGACAAAAAGAGAACTAAGCTCGGGGGCTGTACAAGCA
AGCCCAAACACAATCTCATGCGAAATTTCACAAAGGGAGTTATGCTTCCT
TTTGAGGCATAACGCTGATTCCTCCACCGGTTTCTATGAAACCTTCGTCC
TAACTCAATTAATGGCCCAACATGTCTCTCATCTTAACAAGAGCACAGGT
CTAGGTGCATTCATATTTTTCTTTAAAGAGCACATGGTTCGTCATCTAAT
TTGTCATTTCGCGTGGTCTGTCTCCGATCTTTTCAGGTGTCGGGTCATCG
TCATCACCAATTTTGAAGTGGCACAGGTCGTAACCGACTCACCGGGAGCA
ATTTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1020:93453..95458-

>mRNA_F-serratus_M_contig1020.282.1 ID=mRNA_F-serratus_M_contig1020.282.1|Name=mRNA_F-serratus_M_contig1020.282.1|organism=Fucus serratus male|type=CDS|length=870bp|location=Sequence derived from alignment at F-serratus_M_contig1020:93453..95458- (Fucus serratus male)
GCACCGCGTCCAGATCCTCGGGAATCGTTCTACTCCGCTCCCGTCGGGGT
GCTGAGGGGTCTCCACCCTTGCGTTTGTTGCTTCGACGCGCTCATGCGCC
ATCTGCACGGCACCGCGTCCAGATCCTCGGGAATCGTTCTACTCCGCTCC
CGTCGGGGTGCTGAGGGGTCTCCACCCTTGCGTTTGTTGCTTCGACGCGC
TCATGCGCCATCTGCACGACGGATCGGACGGTGAAGCTCTTGCTCGGAAA
AAATCTTGGGAACATCCCAGGGAAGCGGCGGTTGATCCAGAAGTTTCTTT
TTTCGTCGGACGGATCGGACGGTGAAGCTCTTGCTCGGAAAAAATCTTGG
GAACATCCCAGGGAAGCGGCGGTTGATCCAGAAGTTTCTTTTTTCGTCGG
GTGGGAATCGCCAGACAGAGACCTCGGGCGCTATGTAACTCGAGGGTTCA
TCGGTAGCTTCACACCCAGGCCTTTCCAGCCAGCTCTGGCAGATTACTCC
GTCAGGGCGGCCAGTCAGGATCCCAAGTTTTGGGGCCTTGGTTGGGCTCA
AGTCCCGGGTACGAGGTGGGAATCGCCAGACAGAGACCTCGGGCGCTATG
TAACTCGAGGGTTCATCGGTAGCTTCACACCCAGGCCTTTCCAGCCAGCT
CTGGCAGATTACTCCGTCAGGGCGGCCAGTCAGGATCCCAAGTTTTGGGG
CCTTGGTTGGGCTCAAGTCCCGGGTACGAGGTGTCGGGTCATCGTCATCA
CCAATTTTGAAGTGGCACAGGTCGTAACCGACTCACCGGGAGCAATTTGA
GTGTCGGGTCATCGTCATCACCAATTTTGAAGTGGCACAGGTCGTAACCG
ACTCACCGGGAGCAATTTGA
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