mRNA_F-serratus_M_contig1020.281.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1020.281.1
Unique NamemRNA_F-serratus_M_contig1020.281.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1020.281.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1020contigF-serratus_M_contig1020:92104..93254 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size507
Cds size453
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1020.281.1prot_F-serratus_M_contig1020.281.1Fucus serratus malepolypeptideF-serratus_M_contig1020 92158..93254 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928822.9816194-UTR-F-serratus_M_contig1020:92103..921571622928822.9816194-UTR-F-serratus_M_contig1020:92103..92157Fucus serratus maleUTRF-serratus_M_contig1020 92104..92157 -
1690962588.6701508-UTR-F-serratus_M_contig1020:92103..921571690962588.6701508-UTR-F-serratus_M_contig1020:92103..92157Fucus serratus maleUTRF-serratus_M_contig1020 92104..92157 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928822.9978063-CDS-F-serratus_M_contig1020:92157..924941622928822.9978063-CDS-F-serratus_M_contig1020:92157..92494Fucus serratus maleCDSF-serratus_M_contig1020 92158..92494 -
1690962588.6810327-CDS-F-serratus_M_contig1020:92157..924941690962588.6810327-CDS-F-serratus_M_contig1020:92157..92494Fucus serratus maleCDSF-serratus_M_contig1020 92158..92494 -
1622928823.0091379-CDS-F-serratus_M_contig1020:93138..932541622928823.0091379-CDS-F-serratus_M_contig1020:93138..93254Fucus serratus maleCDSF-serratus_M_contig1020 93139..93254 -
1690962588.6889722-CDS-F-serratus_M_contig1020:93138..932541690962588.6889722-CDS-F-serratus_M_contig1020:93138..93254Fucus serratus maleCDSF-serratus_M_contig1020 93139..93254 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1020.281.1

>prot_F-serratus_M_contig1020.281.1 ID=prot_F-serratus_M_contig1020.281.1|Name=mRNA_F-serratus_M_contig1020.281.1|organism=Fucus serratus male|type=polypeptide|length=151bp
AIFLPSSIRVIKRSRGKTGFPTATDYSSPHRTGQAGNSSPQYSLTRYTRP
VGTKSRRSRPSSARQNAARLRGELFVDPLGGDGASSSSPRQRAHRLYAEE
LSRRFALGTPVSVRDGLVSNALSEIPAGQDQARPAVVIFLQSYFLQPIPP
*
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mRNA from alignment at F-serratus_M_contig1020:92104..93254-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1020.281.1 ID=mRNA_F-serratus_M_contig1020.281.1|Name=mRNA_F-serratus_M_contig1020.281.1|organism=Fucus serratus male|type=mRNA|length=1151bp|location=Sequence derived from alignment at F-serratus_M_contig1020:92104..93254- (Fucus serratus male)
GCCATATTCCTCCCATCTTCTATCCGCGTCATTAAGCGCAGTCGGGGGAA
GACTGGCTTTCCAACCGCCACGGACTATTCCTCTCCGCATCGGACGGGGC
AGGCAGGCAATTCGAGGTACCAGTAGGATTTATGCAAACAGCAAACAGGG
CTCACTTAGTCCTCACCTTATCTTCCATATCCTACCAGATCAGCTGTAGA
ACTGTAGTGACCGGCTTGACCACTCCAAGTCGGATTCACTCAAGGGGGCA
GCCCAGAAGCTTTGAATCTTGAAGGCCTGCCAAATTGAAGCTGTCGTTGA
GAGGTCGCAATTCCCTCCTGGTGTCGAGAACGAGCGTGATAATCCTCCAA
GGGCTAATAGCTTATGTTCTGTACACGCGAATAAAACCTACACGTGTGAA
GAGAGGGCAAAAAAAGTGAGATCCCCGCTCCCCCCCTGTGTCCTAAAATG
TACGTTTCGTTCGTATTATATTCCATTTGTATTTCCACCACACGCCAGCT
CGTTCTTAGTAGATCTACGTGAGTGATTAAATCAGCCAGATCATCTCTGC
ATTAGCTTTATCATCACCCCACCTCTAGACGGCCTCGTTCCCTCGCCCAG
CGGTCTAACTATAAGCTTTCGAGTGAAAATAGACCTGGGATCGACCCTCG
GTGTACTTCCTCAATGACACTTTCGTTCGTTGTTTTACCGTTCCCTCCTC
CCGATTTTGTCTATTATTTCGCTCGTGACTTCCGTGCCGCCCACTGCATA
CGAATGGCAGTCCGCAGTATTCCCTCACACGATACACCAGGCCCGTTGGA
ACAAAAAGCAGGCGGTCGAGGCCCTCTTCCGCGAGGCAAAATGCTGCACG
TCTACGGGGGGAGCTTTTCGTGGATCCCCTGGGCGGCGACGGTGCCTCCT
CTTCCTCCCCACGCCAACGGGCGCACCGCCTCTACGCAGAAGAACTTTCG
CGTCGGTTTGCACTCGGTACTCCTGTTTCGGTTCGAGACGGTCTCGTTTC
GAATGCACTTTCGGAAATACCAGCGGGCCAAGACCAGGCGCGGCCCGCCG
TTGTGATTTTTCTGCAATCATACTTCCTTCAACCAATTCCTCCGTGATGT
TTATTTTTGGGTGTAAATCGGCGGGACACTTTATCATCATAAAATGGAGA
A
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Coding sequence (CDS) from alignment at F-serratus_M_contig1020:92104..93254-

>mRNA_F-serratus_M_contig1020.281.1 ID=mRNA_F-serratus_M_contig1020.281.1|Name=mRNA_F-serratus_M_contig1020.281.1|organism=Fucus serratus male|type=CDS|length=906bp|location=Sequence derived from alignment at F-serratus_M_contig1020:92104..93254- (Fucus serratus male)
GCCATATTCCTCCCATCTTCTATCCGCGTCATTAAGCGCAGTCGGGGGAA
GACTGGCTTTCCAACCGCCACGGACTATTCCTCTCCGCATCGGACGGGGC
AGGCAGGCAATTCGAGGCCATATTCCTCCCATCTTCTATCCGCGTCATTA
AGCGCAGTCGGGGGAAGACTGGCTTTCCAACCGCCACGGACTATTCCTCT
CCGCATCGGACGGGGCAGGCAGGCAATTCGAGTCCGCAGTATTCCCTCAC
ACGATACACCAGGCCCGTTGGAACAAAAAGCAGGCGGTCGAGGCCCTCTT
CCGCGAGGCAAAATGCTGCACGTCTACGGGGGGAGCTTTTCGTGGATCCC
CTGGGCGGCGACGGTGCCTCCTCTTCCTCCCCACGCCAACGGGCGCACCG
CCTCTACGCAGAAGAACTTTCGCGTCGGTTTGCACTCGGTACTCCTGTTT
CGGTTCGAGACGGTCTCGTTTCGAATGCACTTTCGGAAATACCAGCGGGC
CAAGACCAGGCGCGGCCCGCCGTTGTGATTTTTCTGCAATCATACTTCCT
TCAACCAATTCCTCCGTGATCCGCAGTATTCCCTCACACGATACACCAGG
CCCGTTGGAACAAAAAGCAGGCGGTCGAGGCCCTCTTCCGCGAGGCAAAA
TGCTGCACGTCTACGGGGGGAGCTTTTCGTGGATCCCCTGGGCGGCGACG
GTGCCTCCTCTTCCTCCCCACGCCAACGGGCGCACCGCCTCTACGCAGAA
GAACTTTCGCGTCGGTTTGCACTCGGTACTCCTGTTTCGGTTCGAGACGG
TCTCGTTTCGAATGCACTTTCGGAAATACCAGCGGGCCAAGACCAGGCGC
GGCCCGCCGTTGTGATTTTTCTGCAATCATACTTCCTTCAACCAATTCCT
CCGTGA
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