mRNA_F-serratus_M_contig102.270.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig102.270.1
Unique NamemRNA_F-serratus_M_contig102.270.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig102.270.1 vs. uniprot
Match: Q2TUA3_DICDH (NADH-ubiquinone oxidoreductase chain 5 n=1 Tax=Dictyota dichotoma TaxID=2876 RepID=Q2TUA3_DICDH)

HSP 1 Score: 172 bits (435), Expect = 1.050e-47
Identity = 85/133 (63.91%), Postives = 104/133 (78.20%), Query Frame = 1 
Query:    1 VISKVGYATHSPASHFAYWLGSSTAFCTAFYPIQLLSLCSLVEPNGSRSLLLSASEGCWAIGLVLGLLAFPSMFVGYFSRDLFIGLGIDFWGNSLFCFSFNLSIIDAKFMSTSTKTMPLLLSMLGGFLRFILY 399
            VI ++GYAT+S  SHFAYWLGS  AFCTAFY I+LL+LC L E NG R L+LSA+EG W IG VLG+LA PS+F+GY  RDLFIGLG +FWGNS+F    +LS+IDA+FM T  K +PL LS+LGG L F++Y
Sbjct:  404 VILEIGYATYSNVSHFAYWLGSFAAFCTAFYSIRLLALCFLSESNGPRHLILSATEGGWIIGSVLGILALPSIFIGYLGRDLFIGLGTNFWGNSIFILPEHLSLIDAEFMPTIMKLLPLCLSVLGGGLSFLVY 536
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BLAST of mRNA_F-serratus_M_contig102.270.1 vs. uniprot
Match: A0A8F0FDL8_9PHAE (NADH-ubiquinone oxidoreductase chain 5 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0FDL8_9PHAE)

HSP 1 Score: 159 bits (403), Expect = 5.050e-43
Identity = 77/133 (57.89%), Postives = 97/133 (72.93%), Query Frame = 1 
Query:    1 VISKVGYATHSPASHFAYWLGSSTAFCTAFYPIQLLSLCSLVEPNGSRSLLLSASEGCWAIGLVLGLLAFPSMFVGYFSRDLFIGLGIDFWGNSLFCFSFNLSIIDAKFMSTSTKTMPLLLSMLGGFLRFILY 399
            VI ++ YAT++  SHF YW GS +AFCT+FY ++LL+LC LVEPNGSRS +LSASEG W +GL LGLLA PS+F GY  +DL IGLG  FWGNSLF    NL++IDA+F+    K  P  LS+LG +  F+ Y
Sbjct:  404 VILEISYATYTGPSHFVYWFGSLSAFCTSFYSVRLLALCFLVEPNGSRSSILSASEGNWFMGLPLGLLAIPSIFSGYICKDLLIGLGTGFWGNSLFILPVNLTLIDAEFLPIYIKLFPTFLSLLGAYFSFLFY 536
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BLAST of mRNA_F-serratus_M_contig102.270.1 vs. uniprot
Match: A0A8E8PF72_9PHAE (NADH-ubiquinone oxidoreductase chain 5 n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E8PF72_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 3.100e-39
Identity = 76/133 (57.14%), Postives = 95/133 (71.43%), Query Frame = 1 
Query:    1 VISKVGYATHSPASHFAYWLGSSTAFCTAFYPIQLLSLCSLVEPNGSRSLLLSASEGCWAIGLVLGLLAFPSMFVGYFSRDLFIGLGIDFWGNSLFCFSFNLSIIDAKFMSTSTKTMPLLLSMLGGFLRFILY 399
            ++ +V YAT+S  +HFAY+LG+  AFCTAFY  +LL LC L EP GSR  LL A+EG WAI L LGLLA PS+F+GY +RDLFIGLG DFWGNS+F    N  +ID ++M    K +PLL+S+ G  L F LY
Sbjct:  404 IVLEVAYATYSTRAHFAYFLGAFGAFCTAFYSFRLLYLCFLSEPRGSRVGLLPAAEGGWAISLSLGLLAIPSIFIGYLARDLFIGLGSDFWGNSIFSLPTNSVLIDGEYMPLHIKMLPLLMSISGLLLGFYLY 536
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BLAST of mRNA_F-serratus_M_contig102.270.1 vs. uniprot
Match: A0A7S6ZPE4_9STRA (NADH-ubiquinone oxidoreductase chain 5 n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6ZPE4_9STRA)

HSP 1 Score: 143 bits (360), Expect = 3.850e-37
Identity = 69/134 (51.49%), Postives = 93/134 (69.40%), Query Frame = 1 
Query:    1 VISKVGYATHSPASHFAYWLGSSTAFCTAFYPIQLLSLCSLVEPNGSRSLLLSASEGCWAIGLVLGLLAFPSMFVGYFSRDLFIGLGIDFWGNSLFCFSFNLSIIDAKFMSTSTKTMPLLLSMLGGFLRFILYR 402
            +I +V Y +++  +HFAY LG+  AFCTAFY  +L+ L  L E NG R LLL ASE  W I   LG+LA PS+F+GY  +DLFIGLG  FWGN+ F    +LS++DA+FM T+ K +P+ LS++G  L F+LYR
Sbjct:  404 LILEVAYGSYTTGAHFAYALGTLAAFCTAFYSFRLIYLSFLSEANGRRPLLLGASESSWPISTALGILAIPSIFIGYLGKDLFIGLGTPFWGNAFFALPGHLSLVDAEFMPTAMKILPVCLSIVGAILAFVLYR 537
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BLAST of mRNA_F-serratus_M_contig102.270.1 vs. uniprot
Match: A0A8E7IX57_9STRA (NADH-ubiquinone oxidoreductase chain 5 n=1 Tax=Attheya longicornis TaxID=451786 RepID=A0A8E7IX57_9STRA)

HSP 1 Score: 123 bits (309), Expect = 4.490e-30
Identity = 60/133 (45.11%), Postives = 91/133 (68.42%), Query Frame = 1 
Query:    1 VISKVGYATHSPASHFAYWLGSSTAFCTAFYPIQLLSLCSLVEPNGSRSLLLSASEGCWAIGLVLGLLAFPSMFVGYFSRDLFIGLGIDFWGNSLFCFSFNLSIIDAKFMSTSTKTMPLLLSMLGGFLRFILY 399
            VI +V Y   +   H++Y LGS  AF TAFY  +LL L  L +PNG +S++ SA +  + I + L +L+ PS+F+GY+++D+ IGLG DFWGNSLF  S N++++DA+F+    K +P++LS+ G  L F+LY
Sbjct:  423 VILEVAYGKFNSQGHYSYLLGSVGAFLTAFYSTRLLYLTFLTKPNGYKSVICSAYDSSYQISIALAILSIPSIFIGYYTKDMIIGLGTDFWGNSLFVLSENMNMLDAEFIPHLYKLLPVILSLSGASLSFLLY 555
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig102.270.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q2TUA3_DICDH1.050e-4763.91NADH-ubiquinone oxidoreductase chain 5 n=1 Tax=Dic... [more]
A0A8F0FDL8_9PHAE5.050e-4357.89NADH-ubiquinone oxidoreductase chain 5 n=1 Tax=Pro... [more]
A0A8E8PF72_9PHAE3.100e-3957.14NADH-ubiquinone oxidoreductase chain 5 n=1 Tax=Pha... [more]
A0A7S6ZPE4_9STRA3.850e-3751.49NADH-ubiquinone oxidoreductase chain 5 n=1 Tax=Sch... [more]
A0A8E7IX57_9STRA4.490e-3045.11NADH-ubiquinone oxidoreductase chain 5 n=1 Tax=Att... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig102contigF-serratus_M_contig102:643983..644396 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score91.3
Seed ortholog evalue3.9e-16
Seed eggNOG ortholog70448.Q0P3F5
Preferred namenad5
KEGG rclassRC00061
KEGG koko:K03883
KEGG TC3.D.1.6
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko05012,map00190,map01100,map04714,map04723,map05012
KEGG ModuleM00142
Hectar predicted targeting categoryother localisation
EggNOG free text desc.NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
EggNOG OGs34KBF@3041,37NNE@33090,COG1007@1,KOG4668@2759
EC1.6.5.3
COG Functional cat.C
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03029
Exons1
Model size414
Cds size414
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928821.642257-CDS-F-serratus_M_contig102:643982..6443961622928821.642257-CDS-F-serratus_M_contig102:643982..644396Fucus serratus maleCDSF-serratus_M_contig102 643983..644396 +
1690962587.908904-CDS-F-serratus_M_contig102:643982..6443961690962587.908904-CDS-F-serratus_M_contig102:643982..644396Fucus serratus maleCDSF-serratus_M_contig102 643983..644396 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig102.270.1prot_F-serratus_M_contig102.270.1Fucus serratus malepolypeptideF-serratus_M_contig102 643983..644396 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig102.270.1

>prot_F-serratus_M_contig102.270.1 ID=prot_F-serratus_M_contig102.270.1|Name=mRNA_F-serratus_M_contig102.270.1|organism=Fucus serratus male|type=polypeptide|length=138bp
VISKVGYATHSPASHFAYWLGSSTAFCTAFYPIQLLSLCSLVEPNGSRSL
LLSASEGCWAIGLVLGLLAFPSMFVGYFSRDLFIGLGIDFWGNSLFCFSF
NLSIIDAKFMSTSTKTMPLLLSMLGGFLRFILYRIIM*
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mRNA from alignment at F-serratus_M_contig102:643983..644396+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig102.270.1 ID=mRNA_F-serratus_M_contig102.270.1|Name=mRNA_F-serratus_M_contig102.270.1|organism=Fucus serratus male|type=mRNA|length=414bp|location=Sequence derived from alignment at F-serratus_M_contig102:643983..644396+ (Fucus serratus male)
GTCATTTCGAAGGTAGGGTATGCCACTCATTCGCCAGCGTCCCATTTTGC
TTATTGGTTAGGAAGTTCCACGGCTTTTTGTACGGCTTTTTATCCTATCC
AATTACTGTCTTTATGCTCTCTGGTAGAACCAAATGGAAGTCGTTCGTTG
CTTCTTTCAGCGTCTGAGGGTTGTTGGGCTATCGGTTTGGTTTTAGGGTT
ATTGGCATTTCCTAGTATGTTTGTTGGGTACTTTAGTCGTGATTTATTTA
TTGGGTTAGGTATAGATTTTTGGGGAAATTCTCTTTTTTGCTTCTCATTT
AATTTAAGCATAATCGATGCAAAGTTTATGTCTACTTCCACAAAAACTAT
GCCATTACTACTAAGTATGCTAGGAGGGTTTCTTCGTTTTATCTTATATC
GTATTATAATGTAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig102:643983..644396+

>mRNA_F-serratus_M_contig102.270.1 ID=mRNA_F-serratus_M_contig102.270.1|Name=mRNA_F-serratus_M_contig102.270.1|organism=Fucus serratus male|type=CDS|length=828bp|location=Sequence derived from alignment at F-serratus_M_contig102:643983..644396+ (Fucus serratus male)
GTCATTTCGAAGGTAGGGTATGCCACTCATTCGCCAGCGTCCCATTTTGC
TTATTGGTTAGGAAGTTCCACGGCTTTTTGTACGGCTTTTTATCCTATCC
AATTACTGTCTTTATGCTCTCTGGTAGAACCAAATGGAAGTCGTTCGTTG
CTTCTTTCAGCGTCTGAGGGTTGTTGGGCTATCGGTTTGGTTTTAGGGTT
ATTGGCATTTCCTAGTATGTTTGTTGGGTACTTTAGTCGTGATTTATTTA
TTGGGTTAGGTATAGATTTTTGGGGAAATTCTCTTTTTTGCTTCTCATTT
AATTTAAGCATAATCGATGCAAAGTTTATGTCTACTTCCACAAAAACTAT
GCCATTACTACTAAGTATGCTAGGAGGGTTTCTTCGTTTTATCTTATATC
GTATTATAATGTAAGTCATTTCGAAGGTAGGGTATGCCACTCATTCGCCA
GCGTCCCATTTTGCTTATTGGTTAGGAAGTTCCACGGCTTTTTGTACGGC
TTTTTATCCTATCCAATTACTGTCTTTATGCTCTCTGGTAGAACCAAATG
GAAGTCGTTCGTTGCTTCTTTCAGCGTCTGAGGGTTGTTGGGCTATCGGT
TTGGTTTTAGGGTTATTGGCATTTCCTAGTATGTTTGTTGGGTACTTTAG
TCGTGATTTATTTATTGGGTTAGGTATAGATTTTTGGGGAAATTCTCTTT
TTTGCTTCTCATTTAATTTAAGCATAATCGATGCAAAGTTTATGTCTACT
TCCACAAAAACTATGCCATTACTACTAAGTATGCTAGGAGGGTTTCTTCG
TTTTATCTTATATCGTATTATAATGTAA
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