mRNA_F-serratus_M_contig102.270.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig102.270.1
Unique NamemRNA_F-serratus_M_contig102.270.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig102.270.1 vs. uniprot
Match: A0A8D5Z619_9PHAE (NADH-ubiquinone oxidoreductase chain 5 n=1 Tax=Tinocladia crassa TaxID=185802 RepID=A0A8D5Z619_9PHAE)

HSP 1 Score: 185 bits (470), Expect = 2.200e-56
Identity = 92/134 (68.66%), Postives = 105/134 (78.36%), Query Frame = 1
Query:    1 VISKVGYATHSPASHFAYWLGSSTAFCTAFYPIQLLSLCSLVEPNGSRSLLLSASEGCWAIGLVLGLLAFPSMFVGYFSRDLFIGLGIDFWGNSLFCFSFNLSIIDAKFMSTSTKTMPLLLSMLGGFLRFILYR 402
            VI +VGYAT+S ASHF YWLGS  A CTAFY I+LL+LC L E  G+RSL LSASEG W + +VLG+LA PSMF+GYF RDLFIGLG DFWGN+LFC   NLSIIDA+FMST  K +PL  SM+GG   FILYR
Sbjct:    5 VILEVGYATYSSASHFVYWLGSLAALCTAFYSIRLLALCFLSESKGTRSLTLSASEGNWPMSVVLGILAIPSMFIGYFCRDLFIGLGTDFWGNALFCLPSNLSIIDAEFMSTHIKLLPLCFSMMGGLASFILYR 138          
BLAST of mRNA_F-serratus_M_contig102.270.1 vs. uniprot
Match: A0A1Z4F5Q1_9PHAE (NADH-ubiquinone oxidoreductase chain 5 (Fragment) n=2 Tax=Ecklonia TaxID=105406 RepID=A0A1Z4F5Q1_9PHAE)

HSP 1 Score: 184 bits (468), Expect = 4.420e-56
Identity = 93/134 (69.40%), Postives = 107/134 (79.85%), Query Frame = 1
Query:    1 VISKVGYATHSPASHFAYWLGSSTAFCTAFYPIQLLSLCSLVEPNGSRSLLLSASEGCWAIGLVLGLLAFPSMFVGYFSRDLFIGLGIDFWGNSLFCFSFNLSIIDAKFMSTSTKTMPLLLSMLGGFLRFILYR 402
            VI +VGYAT+S ASHFAYWLGS +AFCTAFY I+LL LC LVEPNGSRSLLLSASE  W +GLVLG+LA PSMF+GY  RDLFIGLG DFWGNSLF    +LSI+DA+FM+   K  PL  S+ GG + FILY+
Sbjct:    5 VILEVGYATYSNASHFAYWLGSLSAFCTAFYSIRLLVLCFLVEPNGSRSLLLSASESGWPMGLVLGILALPSMFIGYLGRDLFIGLGTDFWGNSLFYLPNHLSIVDAEFMAFDLKIFPLCCSIAGGLVSFILYK 138          
BLAST of mRNA_F-serratus_M_contig102.270.1 vs. uniprot
Match: A0A1I9LW32_9PHAE (NADH-ubiquinone oxidoreductase chain 5 n=2 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LW32_9PHAE)

HSP 1 Score: 194 bits (493), Expect = 4.850e-56
Identity = 95/134 (70.90%), Postives = 112/134 (83.58%), Query Frame = 1
Query:    1 VISKVGYATHSPASHFAYWLGSSTAFCTAFYPIQLLSLCSLVEPNGSRSLLLSASEGCWAIGLVLGLLAFPSMFVGYFSRDLFIGLGIDFWGNSLFCFSFNLSIIDAKFMSTSTKTMPLLLSMLGGFLRFILYR 402
            VI +VGYAT+S  SHFAYWLGS  AFCTAFY I+LL+LC L EPNGSR ++LSASEG W +G+VLG+LA PS+F+GYFSRDLFIGLG DFWGN+LFC   NLSIIDA+FMSTSTK +PL  S++G  L FILY+
Sbjct:  404 VILEVGYATYSNVSHFAYWLGSFAAFCTAFYSIRLLALCFLSEPNGSRIIVLSASEGSWPMGVVLGILAIPSIFIGYFSRDLFIGLGSDFWGNALFCLPNNLSIIDAEFMSTSTKILPLCFSIIGAGLSFILYK 537          
BLAST of mRNA_F-serratus_M_contig102.270.1 vs. uniprot
Match: Q2TUE3_9PHAE (NADH-ubiquinone oxidoreductase chain 5 n=2 Tax=Desmarestia TaxID=31339 RepID=Q2TUE3_9PHAE)

HSP 1 Score: 192 bits (487), Expect = 3.570e-55
Identity = 94/134 (70.15%), Postives = 110/134 (82.09%), Query Frame = 1
Query:    1 VISKVGYATHSPASHFAYWLGSSTAFCTAFYPIQLLSLCSLVEPNGSRSLLLSASEGCWAIGLVLGLLAFPSMFVGYFSRDLFIGLGIDFWGNSLFCFSFNLSIIDAKFMSTSTKTMPLLLSMLGGFLRFILYR 402
            VI +VGYAT+S ASHFAYWLGS  AFCTAFY I+LL+LC L EPNGSRSL+LSASEG  ++G+VLGLLA PS+F+GY  RDLFIGLG DFWGN+LFC   NLSI+DA+FMST+ K  PL  SM+GG   F+LYR
Sbjct:  404 VILEVGYATYSNASHFAYWLGSFAAFCTAFYSIRLLALCFLAEPNGSRSLILSASEGGSSMGIVLGLLAIPSIFIGYLGRDLFIGLGTDFWGNALFCLPINLSIVDAEFMSTNIKIFPLCCSMIGGVFSFLLYR 537          
BLAST of mRNA_F-serratus_M_contig102.270.1 vs. uniprot
Match: A0A0U1XC76_SCYLO (NADH-ubiquinone oxidoreductase chain 5 n=6 Tax=Ectocarpales TaxID=2877 RepID=A0A0U1XC76_SCYLO)

HSP 1 Score: 191 bits (486), Expect = 4.980e-55
Identity = 93/134 (69.40%), Postives = 109/134 (81.34%), Query Frame = 1
Query:    1 VISKVGYATHSPASHFAYWLGSSTAFCTAFYPIQLLSLCSLVEPNGSRSLLLSASEGCWAIGLVLGLLAFPSMFVGYFSRDLFIGLGIDFWGNSLFCFSFNLSIIDAKFMSTSTKTMPLLLSMLGGFLRFILYR 402
            VI ++ YA++S ASHFAYWLGS  A CTAFY I+L++LC L EPNGSR  LLSASEG W +GLVLG+LA PS+F+GYFSRDLFIGLG DFWGN+LFC   NL+IIDA+FMS  TK +PL LSMLGG   FILY+
Sbjct:  404 VILEISYASYSSASHFAYWLGSFAALCTAFYSIRLIALCFLSEPNGSRRFLLSASEGSWPMGLVLGILAVPSIFIGYFSRDLFIGLGTDFWGNALFCLPSNLNIIDAEFMSIGTKILPLCLSMLGGLASFILYK 537          
BLAST of mRNA_F-serratus_M_contig102.270.1 vs. uniprot
Match: Q94YZ3_PYLLI (NADH-ubiquinone oxidoreductase chain 5 n=1 Tax=Pylaiella littoralis TaxID=2885 RepID=Q94YZ3_PYLLI)

HSP 1 Score: 188 bits (477), Expect = 9.890e-54
Identity = 91/134 (67.91%), Postives = 108/134 (80.60%), Query Frame = 1
Query:    1 VISKVGYATHSPASHFAYWLGSSTAFCTAFYPIQLLSLCSLVEPNGSRSLLLSASEGCWAIGLVLGLLAFPSMFVGYFSRDLFIGLGIDFWGNSLFCFSFNLSIIDAKFMSTSTKTMPLLLSMLGGFLRFILYR 402
            VI +VGY+ +S  SHFAYWLGS  AFCTAFY I+L++LC L EPNG RSLLLSASE  W +GLVLG+LA PS+F+GY SRDLFIGLG DFWGN+LFC   NL+IIDA+FM+TS K +PL LSM G  L F+LY+
Sbjct:  404 VILEVGYSAYSNVSHFAYWLGSFAAFCTAFYSIRLIALCFLSEPNGGRSLLLSASESSWPMGLVLGILAIPSIFIGYLSRDLFIGLGTDFWGNALFCLPVNLNIIDAEFMTTSIKIIPLCLSMSGALLSFVLYK 537          
BLAST of mRNA_F-serratus_M_contig102.270.1 vs. uniprot
Match: A0A8F0FDC2_9PHAE (NADH-ubiquinone oxidoreductase chain 5 n=1 Tax=Analipus japonicus TaxID=31333 RepID=A0A8F0FDC2_9PHAE)

HSP 1 Score: 187 bits (474), Expect = 2.680e-53
Identity = 95/134 (70.90%), Postives = 107/134 (79.85%), Query Frame = 1
Query:    1 VISKVGYATHSPASHFAYWLGSSTAFCTAFYPIQLLSLCSLVEPNGSRSLLLSASEGCWAIGLVLGLLAFPSMFVGYFSRDLFIGLGIDFWGNSLFCFSFNLSIIDAKFMSTSTKTMPLLLSMLGGFLRFILYR 402
            VI +VGYAT+S ASHFAYWLGS  AFCTAFY I+LL+LC LVEPNGSRS+LLSASEG   IGLVLGLLA PS+F+GY  RDLFIGLG DFWGN+LFC   NL+I+DA+FM T  K  PL  S+LGG   FI YR
Sbjct:  404 VILEVGYATYSNASHFAYWLGSFAAFCTAFYSIRLLALCFLVEPNGSRSVLLSASEGGVFIGLVLGLLAIPSIFIGYLGRDLFIGLGTDFWGNALFCLPVNLTIVDAEFMLTRIKLFPLCCSVLGGVSSFIFYR 537          
BLAST of mRNA_F-serratus_M_contig102.270.1 vs. uniprot
Match: A0A0U1V1M9_SARFS (NADH-ubiquinone oxidoreductase chain 5 n=28 Tax=Sargassaceae TaxID=3014 RepID=A0A0U1V1M9_SARFS)

HSP 1 Score: 186 bits (472), Expect = 5.190e-53
Identity = 94/134 (70.15%), Postives = 110/134 (82.09%), Query Frame = 1
Query:    1 VISKVGYATHSPASHFAYWLGSSTAFCTAFYPIQLLSLCSLVEPNGSRSLLLSASEGCWAIGLVLGLLAFPSMFVGYFSRDLFIGLGIDFWGNSLFCFSFNLSIIDAKFMSTSTKTMPLLLSMLGGFLRFILYR 402
            VI ++ YAT+S  +HF+YWLGS  AFCTAFY I+L++LC LVEPNGSR LLLSASEG  AIG VLGLLA PS+FVGYFSRDLFIGLG  FWG+SLFC   NLS+IDA+FMST +K +PL LS++GG L F LYR
Sbjct:  404 VILEIAYATYSIPAHFSYWLGSLAAFCTAFYSIRLIALCFLVEPNGSRKLLLSASEGGKAIGFVLGLLAIPSIFVGYFSRDLFIGLGTHFWGSSLFCLPSNLSLIDAEFMSTFSKMLPLCLSIVGGALSFTLYR 537          
BLAST of mRNA_F-serratus_M_contig102.270.1 vs. uniprot
Match: A0A3G5FPL7_9PHAE (NADH-ubiquinone oxidoreductase chain 5 n=3 Tax=Ectocarpales TaxID=2877 RepID=A0A3G5FPL7_9PHAE)

HSP 1 Score: 186 bits (472), Expect = 5.190e-53
Identity = 90/134 (67.16%), Postives = 107/134 (79.85%), Query Frame = 1
Query:    1 VISKVGYATHSPASHFAYWLGSSTAFCTAFYPIQLLSLCSLVEPNGSRSLLLSASEGCWAIGLVLGLLAFPSMFVGYFSRDLFIGLGIDFWGNSLFCFSFNLSIIDAKFMSTSTKTMPLLLSMLGGFLRFILYR 402
            VI +  YAT+S A+HFAYWLGS  AFCTAFY I+LL+LC L EPNGSR L+LSASEG W +G+VLG+LA PS+F+GY S+DLFIGLG DFWGN+LFC   NLSIIDA+FM T  K +PL  S++GG   FILYR
Sbjct:  404 VILEASYATYSSAAHFAYWLGSFAAFCTAFYSIRLLALCFLSEPNGSRLLILSASEGSWPMGIVLGILAVPSIFIGYLSKDLFIGLGTDFWGNALFCLPDNLSIIDAEFMPTGIKILPLCFSIMGGLASFILYR 537          
BLAST of mRNA_F-serratus_M_contig102.270.1 vs. uniprot
Match: A0A4Y5T8T8_9PHAE (NADH-ubiquinone oxidoreductase chain 5 n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A4Y5T8T8_9PHAE)

HSP 1 Score: 174 bits (442), Expect = 1.050e-48
Identity = 86/133 (64.66%), Postives = 101/133 (75.94%), Query Frame = 1
Query:    1 VISKVGYATHSPASHFAYWLGSSTAFCTAFYPIQLLSLCSLVEPNGSRSLLLSASEGCWAIGLVLGLLAFPSMFVGYFSRDLFIGLGIDFWGNSLFCFSFNLSIIDAKFMSTSTKTMPLLLSMLGGFLRFILY 399
            V+ +VGYATHS  SHFAYWLG   AFCTAFY I+LL LC L EPNGSR LL+SASE  W +G VLG+LA PS+F GY  RDLFIGLG  FWGNS+F    +LSIIDA+FM T+ K +PL+ S++GG L F LY
Sbjct:  404 VVLEVGYATHSFVSHFAYWLGGFAAFCTAFYSIRLLVLCFLSEPNGSRFLLMSASESSWIMGTVLGVLAIPSIFAGYLGRDLFIGLGTTFWGNSIFILPSHLSIIDAEFMPTTMKLLPLIFSLVGGLLSFFLY 536          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig102.270.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8D5Z619_9PHAE2.200e-5668.66NADH-ubiquinone oxidoreductase chain 5 n=1 Tax=Tin... [more]
A0A1Z4F5Q1_9PHAE4.420e-5669.40NADH-ubiquinone oxidoreductase chain 5 (Fragment) ... [more]
A0A1I9LW32_9PHAE4.850e-5670.90NADH-ubiquinone oxidoreductase chain 5 n=2 Tax=Ple... [more]
Q2TUE3_9PHAE3.570e-5570.15NADH-ubiquinone oxidoreductase chain 5 n=2 Tax=Des... [more]
A0A0U1XC76_SCYLO4.980e-5569.40NADH-ubiquinone oxidoreductase chain 5 n=6 Tax=Ect... [more]
Q94YZ3_PYLLI9.890e-5467.91NADH-ubiquinone oxidoreductase chain 5 n=1 Tax=Pyl... [more]
A0A8F0FDC2_9PHAE2.680e-5370.90NADH-ubiquinone oxidoreductase chain 5 n=1 Tax=Ana... [more]
A0A0U1V1M9_SARFS5.190e-5370.15NADH-ubiquinone oxidoreductase chain 5 n=28 Tax=Sa... [more]
A0A3G5FPL7_9PHAE5.190e-5367.16NADH-ubiquinone oxidoreductase chain 5 n=3 Tax=Ect... [more]
A0A4Y5T8T8_9PHAE1.050e-4864.66NADH-ubiquinone oxidoreductase chain 5 n=1 Tax=Dic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig102contigF-serratus_M_contig102:643983..644396 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score91.3
Seed ortholog evalue3.9e-16
Seed eggNOG ortholog70448.Q0P3F5
Preferred namenad5
KEGG rclassRC00061
KEGG koko:K03883
KEGG TC3.D.1.6
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko05012,map00190,map01100,map04714,map04723,map05012
KEGG ModuleM00142
Hectar predicted targeting categoryother localisation
EggNOG free text desc.NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
EggNOG OGs34KBF@3041,37NNE@33090,COG1007@1,KOG4668@2759
EC1.6.5.3
COG Functional cat.C
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03029
Exons1
Model size414
Cds size414
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928821.642257-CDS-F-serratus_M_contig102:643982..6443961622928821.642257-CDS-F-serratus_M_contig102:643982..644396Fucus serratus maleCDSF-serratus_M_contig102 643983..644396 +
1690962587.908904-CDS-F-serratus_M_contig102:643982..6443961690962587.908904-CDS-F-serratus_M_contig102:643982..644396Fucus serratus maleCDSF-serratus_M_contig102 643983..644396 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig102.270.1prot_F-serratus_M_contig102.270.1Fucus serratus malepolypeptideF-serratus_M_contig102 643983..644396 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig102.270.1

>prot_F-serratus_M_contig102.270.1 ID=prot_F-serratus_M_contig102.270.1|Name=mRNA_F-serratus_M_contig102.270.1|organism=Fucus serratus male|type=polypeptide|length=138bp
VISKVGYATHSPASHFAYWLGSSTAFCTAFYPIQLLSLCSLVEPNGSRSL
LLSASEGCWAIGLVLGLLAFPSMFVGYFSRDLFIGLGIDFWGNSLFCFSF
NLSIIDAKFMSTSTKTMPLLLSMLGGFLRFILYRIIM*
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mRNA from alignment at F-serratus_M_contig102:643983..644396+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig102.270.1 ID=mRNA_F-serratus_M_contig102.270.1|Name=mRNA_F-serratus_M_contig102.270.1|organism=Fucus serratus male|type=mRNA|length=414bp|location=Sequence derived from alignment at F-serratus_M_contig102:643983..644396+ (Fucus serratus male)
GTCATTTCGAAGGTAGGGTATGCCACTCATTCGCCAGCGTCCCATTTTGC TTATTGGTTAGGAAGTTCCACGGCTTTTTGTACGGCTTTTTATCCTATCC AATTACTGTCTTTATGCTCTCTGGTAGAACCAAATGGAAGTCGTTCGTTG CTTCTTTCAGCGTCTGAGGGTTGTTGGGCTATCGGTTTGGTTTTAGGGTT ATTGGCATTTCCTAGTATGTTTGTTGGGTACTTTAGTCGTGATTTATTTA TTGGGTTAGGTATAGATTTTTGGGGAAATTCTCTTTTTTGCTTCTCATTT AATTTAAGCATAATCGATGCAAAGTTTATGTCTACTTCCACAAAAACTAT GCCATTACTACTAAGTATGCTAGGAGGGTTTCTTCGTTTTATCTTATATC GTATTATAATGTAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig102:643983..644396+

>mRNA_F-serratus_M_contig102.270.1 ID=mRNA_F-serratus_M_contig102.270.1|Name=mRNA_F-serratus_M_contig102.270.1|organism=Fucus serratus male|type=CDS|length=828bp|location=Sequence derived from alignment at F-serratus_M_contig102:643983..644396+ (Fucus serratus male)
GTCATTTCGAAGGTAGGGTATGCCACTCATTCGCCAGCGTCCCATTTTGC
TTATTGGTTAGGAAGTTCCACGGCTTTTTGTACGGCTTTTTATCCTATCC
AATTACTGTCTTTATGCTCTCTGGTAGAACCAAATGGAAGTCGTTCGTTG
CTTCTTTCAGCGTCTGAGGGTTGTTGGGCTATCGGTTTGGTTTTAGGGTT
ATTGGCATTTCCTAGTATGTTTGTTGGGTACTTTAGTCGTGATTTATTTA
TTGGGTTAGGTATAGATTTTTGGGGAAATTCTCTTTTTTGCTTCTCATTT
AATTTAAGCATAATCGATGCAAAGTTTATGTCTACTTCCACAAAAACTAT
GCCATTACTACTAAGTATGCTAGGAGGGTTTCTTCGTTTTATCTTATATC
GTATTATAATGTAAGTCATTTCGAAGGTAGGGTATGCCACTCATTCGCCA
GCGTCCCATTTTGCTTATTGGTTAGGAAGTTCCACGGCTTTTTGTACGGC
TTTTTATCCTATCCAATTACTGTCTTTATGCTCTCTGGTAGAACCAAATG
GAAGTCGTTCGTTGCTTCTTTCAGCGTCTGAGGGTTGTTGGGCTATCGGT
TTGGTTTTAGGGTTATTGGCATTTCCTAGTATGTTTGTTGGGTACTTTAG
TCGTGATTTATTTATTGGGTTAGGTATAGATTTTTGGGGAAATTCTCTTT
TTTGCTTCTCATTTAATTTAAGCATAATCGATGCAAAGTTTATGTCTACT
TCCACAAAAACTATGCCATTACTACTAAGTATGCTAGGAGGGTTTCTTCG
TTTTATCTTATATCGTATTATAATGTAA
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